Wall clock time and date at job start Tue Mar 31 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 H 1.09002 * 109.47158 * 185.15790 * 3 2 1 5 5 C 1.50706 * 109.46950 * 305.15750 * 3 2 1 6 6 H 1.07995 * 119.99914 * 120.00751 * 5 3 2 7 7 C 1.37875 * 119.99634 * 299.99897 * 5 3 2 8 8 N 1.31513 * 120.00448 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99817 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46941 * 119.99781 * 9 7 5 12 12 H 1.48498 * 109.47225 * 240.00302 * 9 7 5 13 13 N 1.46899 * 109.47639 * 65.15580 * 3 2 1 14 14 C 1.46898 * 110.99749 * 85.96507 * 13 3 2 15 15 C 1.50702 * 109.46947 * 174.53797 * 14 13 3 16 16 O 1.21281 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00026 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99623 * 180.02562 * 17 15 14 19 19 C 1.53011 * 109.46634 * 180.02562 * 18 17 15 20 20 H 1.09000 * 109.70575 * 60.59073 * 19 18 17 21 21 C 1.53477 * 109.73831 * 181.21281 * 19 18 17 22 22 O 1.43177 * 108.24680 * 179.46265 * 21 19 18 23 23 C 1.36107 * 116.70754 * 313.83762 * 22 21 19 24 24 C 1.38700 * 119.39995 * 197.10328 * 23 22 21 25 25 C 1.38192 * 120.07085 * 180.13239 * 24 23 22 26 26 C 1.38242 * 120.11621 * 359.97438 * 25 24 23 27 27 C 1.38202 * 120.11302 * 359.94747 * 26 25 24 28 28 C 1.38705 * 120.06103 * 0.02562 * 27 26 25 29 29 O 1.36110 * 119.38747 * 180.18042 * 28 27 26 30 30 H 1.09006 * 109.46701 * 54.85729 * 1 2 3 31 31 H 1.08996 * 109.46915 * 174.85185 * 1 2 3 32 32 H 1.08993 * 109.47334 * 294.85543 * 1 2 3 33 33 H 1.09000 * 109.47256 * 239.99591 * 2 1 3 34 34 H 1.08999 * 109.46425 * 119.99436 * 2 1 3 35 35 H 0.96995 * 120.00374 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99357 * 322.02049 * 13 3 2 37 37 H 1.09005 * 109.46861 * 54.54368 * 14 13 3 38 38 H 1.08993 * 109.47999 * 294.54270 * 14 13 3 39 39 H 0.96991 * 119.99513 * 0.02562 * 17 15 14 40 40 H 1.08991 * 109.47657 * 60.00248 * 18 17 15 41 41 H 1.09007 * 109.46907 * 299.99753 * 18 17 15 42 42 H 1.09007 * 109.70648 * 59.77652 * 21 19 18 43 43 H 1.09002 * 109.71480 * 299.15173 * 21 19 18 44 44 H 1.08003 * 119.96076 * 0.12230 * 24 23 22 45 45 H 1.08003 * 119.94367 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.94798 * 179.97438 * 26 25 24 47 47 H 1.07993 * 119.97004 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1617 6 1 0.8270 3.0628 -0.9841 7 6 1.6613 1.7558 -2.4512 8 7 2.4027 0.6914 -2.6674 9 14 0.9133 2.6813 -3.8912 10 1 0.1278 3.8350 -3.3839 11 1 1.9966 3.1731 -4.7799 12 1 0.0213 1.7719 -4.6544 13 7 1.6547 2.0982 1.2568 14 6 2.6440 1.8382 2.3111 15 6 2.2876 2.6323 3.5413 16 8 1.3058 3.3445 3.5400 17 7 3.0598 2.5512 4.6429 18 6 2.7130 3.3229 5.8389 19 6 3.7442 3.0531 6.9367 20 1 4.7332 3.3580 6.5948 21 6 3.3699 3.8352 8.2030 22 8 4.3462 3.5504 9.2108 23 6 4.6861 2.2435 9.3813 24 6 5.3337 1.8545 10.5445 25 6 5.6876 0.5317 10.7308 26 6 5.3970 -0.4075 9.7590 27 6 4.7505 -0.0271 8.5983 28 6 4.3920 1.2989 8.4053 29 8 3.7525 1.6578 7.2586 30 1 -0.3633 0.5916 -0.8404 31 1 -0.3633 -1.0235 -0.0922 32 1 -0.3633 0.4319 0.9324 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.5608 0.3866 -3.5746 36 1 0.7324 1.8096 1.5471 37 1 3.6333 2.1337 1.9618 38 1 2.6466 0.7754 2.5529 39 1 3.8451 1.9820 4.6438 40 1 1.7240 3.0267 6.1883 41 1 2.7097 4.3858 5.5972 42 1 2.3837 3.5250 8.5486 43 1 3.3652 4.9036 7.9874 44 1 5.5617 2.5863 11.3054 45 1 6.1922 0.2312 11.6372 46 1 5.6752 -1.4406 9.9072 47 1 4.5242 -0.7628 7.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581734737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:21 Heat of formation + Delta-G solvation = -102.100017 kcal Electronic energy + Delta-G solvation = -28084.967884 eV Core-core repulsion = 24039.512672 eV Total energy + Delta-G solvation = -4045.455212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35364 -40.70525 -38.82562 -38.35373 -38.04755 -35.95015 -34.45211 -32.90130 -32.28816 -31.61364 -29.97618 -28.99434 -27.58803 -26.11851 -25.05223 -24.31192 -23.63499 -21.94500 -21.42273 -21.10540 -19.83510 -18.74274 -18.57212 -17.97795 -17.56922 -17.17528 -16.69519 -16.58391 -16.22788 -16.19068 -15.87755 -15.50930 -15.39462 -15.24343 -14.90856 -14.79333 -14.59388 -14.46614 -14.16543 -13.92465 -13.72508 -13.52890 -13.04637 -12.84840 -12.82047 -12.77235 -12.64567 -12.43819 -12.16979 -12.04681 -11.94712 -11.70434 -11.53405 -11.42809 -11.10396 -10.75124 -10.42144 -10.17314 -9.64495 -9.09579 -8.93982 -8.05412 -6.12373 0.30784 0.32116 1.41698 1.44865 1.56386 1.64602 1.82017 2.08960 2.17797 2.47418 2.74681 3.17880 3.23491 3.45776 3.59688 3.70112 3.75306 3.94619 4.11222 4.17577 4.24757 4.37150 4.40440 4.44997 4.47660 4.47892 4.55973 4.60398 4.63038 4.66518 4.76180 4.89850 5.10576 5.17983 5.22908 5.32840 5.34150 5.42237 5.53119 5.70991 5.71283 5.75458 5.82733 5.88211 6.30173 6.37183 6.45360 6.67172 6.79599 6.98228 7.25714 7.54804 9.00032 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.001959 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.983807 B =14286.166257 C =14941.232958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.139 4.139 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.500 4.500 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.680 5.680 14 C 0.043 3.957 15 C 0.521 3.479 16 O -0.565 6.565 17 N -0.719 5.719 18 C 0.135 3.865 19 C 0.047 3.953 20 H 0.101 0.899 21 C 0.029 3.971 22 O -0.316 6.316 23 C 0.026 3.974 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.128 4.128 28 C 0.031 3.969 29 O -0.316 6.316 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.260 0.740 36 H 0.334 0.666 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.414 0.586 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 -0.683 28.785 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.028 0.972 5 C -0.539 4.539 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.312 5.312 14 C -0.090 4.090 15 C 0.307 3.693 16 O -0.443 6.443 17 N -0.373 5.373 18 C 0.011 3.989 19 C -0.010 4.010 20 H 0.118 0.882 21 C -0.047 4.047 22 O -0.231 6.231 23 C -0.018 4.018 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.013 4.013 29 O -0.232 6.232 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.251 0.749 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.171 0.829 44 H 0.164 0.836 45 H 0.178 0.822 46 H 0.175 0.825 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.710 0.402 28.433 29.463 hybrid contribution -0.272 -0.669 -1.069 1.290 sum 7.439 -0.267 27.365 28.359 Atomic orbital electron populations 1.21504 0.96400 0.99629 1.00614 1.21975 0.96191 0.99823 0.99876 1.19039 0.94248 0.89410 0.85921 0.97222 1.21278 1.30351 1.11267 0.90963 0.93558 1.25532 0.95983 0.95943 1.00814 1.69985 1.39873 1.24862 1.21044 0.85633 0.78258 0.78778 0.79710 1.19891 1.20830 1.20645 1.60378 1.04381 1.63531 1.02954 1.21821 0.98779 0.98027 0.90380 1.20844 0.82335 0.81601 0.84480 1.90668 1.28777 1.41151 1.83698 1.45717 1.30603 1.48709 1.12254 1.21292 0.97293 0.97685 0.82611 1.23415 1.01409 0.80558 0.95595 0.88159 1.23757 0.91508 1.03779 0.85643 1.86305 1.58599 1.21881 1.56319 1.19237 1.03063 0.83769 0.95762 1.20782 1.00730 0.97828 0.94930 1.21321 0.99951 0.91318 1.00599 1.21313 0.98028 1.01439 0.92470 1.20772 1.00590 0.92991 1.00288 1.19206 1.00530 0.95040 0.86558 1.86325 1.72373 1.26046 1.38421 0.93689 0.93714 0.93826 0.91527 0.94970 0.93120 0.84662 0.88019 0.91574 0.74935 0.91055 0.87959 0.89900 0.82861 0.83607 0.82183 0.82487 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 9.40 71.98 0.68 -4.58 16 2 C -0.14 -6.37 5.51 30.60 0.17 -6.21 16 3 C 0.22 10.97 2.33 44.17 0.10 11.08 16 4 H 0.01 0.53 7.70 -2.39 -0.02 0.51 16 5 C -0.50 -27.64 7.25 25.60 0.19 -27.46 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.02 0.86 5.28 84.65 0.45 1.31 16 8 N -0.92 -51.71 11.38 21.45 0.24 -51.47 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.68 -29.69 5.77 -499.46 -2.88 -32.57 16 14 C 0.04 1.44 5.99 85.56 0.51 1.96 16 15 C 0.52 16.53 7.88 87.66 0.69 17.23 16 16 O -0.57 -22.56 16.32 -3.03 -0.05 -22.61 16 17 N -0.72 -16.14 5.45 -463.04 -2.52 -18.66 16 18 C 0.13 2.49 5.40 86.38 0.47 2.96 16 19 C 0.05 0.74 3.11 30.76 0.10 0.83 16 20 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 21 C 0.03 0.39 6.56 72.14 0.47 0.86 16 22 O -0.32 -5.78 10.42 -82.56 -0.86 -6.64 16 23 C 0.03 0.50 6.49 22.56 0.15 0.65 16 24 C -0.12 -1.84 9.96 22.37 0.22 -1.62 16 25 C -0.11 -1.28 10.04 22.26 0.22 -1.06 16 26 C -0.11 -1.39 10.04 22.26 0.22 -1.16 16 27 C -0.13 -2.13 9.96 22.37 0.22 -1.90 16 28 C 0.03 0.62 6.49 22.56 0.15 0.77 16 29 O -0.32 -6.38 9.83 -82.59 -0.81 -7.19 16 30 H 0.04 2.12 6.85 -2.38 -0.02 2.10 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.69 6.63 -2.39 -0.02 1.67 16 33 H 0.07 3.45 6.22 -2.39 -0.01 3.44 16 34 H 0.03 1.30 7.51 -2.39 -0.02 1.28 16 35 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.33 14.60 6.54 -89.69 -0.59 14.01 16 37 H 0.10 3.29 7.92 -2.38 -0.02 3.27 16 38 H 0.07 2.01 7.55 -2.39 -0.02 1.99 16 39 H 0.41 7.58 8.35 -92.71 -0.77 6.81 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 45 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 46 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -70.41 384.22 -0.21 -70.63 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.36 Total: 28.48 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.01 Total: -6.37 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -5.16 Total: -102.70 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.72 Total: -36.44 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.41 -0.21 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581734737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.473 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds