Wall clock time and date at job start Tue Mar 31 2020 17:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21492 * 120.00051 * 359.97438 * 14 13 3 16 16 C 1.48348 * 120.00327 * 180.02562 * 14 13 3 17 17 C 1.39308 * 119.56747 * 179.72868 * 16 14 13 18 18 C 1.38442 * 119.19544 * 179.72950 * 17 16 14 19 19 C 1.39912 * 118.35102 * 0.52795 * 18 17 16 20 20 C 1.47897 * 120.46710 * 179.75427 * 19 18 17 21 21 O 1.21441 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.34696 * 119.99756 * 179.97438 * 20 19 18 23 23 C 1.45205 * 116.99802 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.46996 * 59.99909 * 23 22 20 25 25 C 1.53000 * 109.47033 * 180.02562 * 23 22 20 26 26 C 1.52998 * 109.46945 * 299.99965 * 23 22 20 27 27 C 1.39771 * 119.06560 * 359.72995 * 19 18 17 28 28 N 1.31411 * 120.71442 * 359.97438 * 27 19 18 29 29 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 30 30 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 31 31 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 36 36 H 1.08003 * 120.39668 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.82525 * 180.25905 * 18 17 16 38 38 H 1.08996 * 109.47239 * 60.00574 * 24 23 22 39 39 H 1.09005 * 109.46869 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.47487 * 300.00061 * 24 23 22 41 41 H 1.09005 * 109.47119 * 60.00493 * 25 23 22 42 42 H 1.09005 * 109.46856 * 179.97438 * 25 23 22 43 43 H 1.08993 * 109.47037 * 299.99855 * 25 23 22 44 44 H 1.09005 * 109.47063 * 59.99980 * 26 23 22 45 45 H 1.09005 * 109.47250 * 179.97438 * 26 23 22 46 46 H 1.08996 * 109.47563 * 299.99936 * 26 23 22 47 47 H 1.08004 * 119.64665 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3408 2.6320 -0.4328 16 6 0.0427 3.3272 -2.6348 17 6 -1.2198 3.9054 -2.7459 18 6 -1.5761 4.5268 -3.9306 19 6 -0.6501 4.5386 -4.9793 20 6 -0.9838 5.1846 -6.2672 21 8 -2.0683 5.7093 -6.4202 22 8 -0.0849 5.1908 -7.2703 23 6 -0.4804 5.8434 -8.5057 24 6 -0.7958 7.3144 -8.2271 25 6 0.6610 5.7493 -9.5202 26 6 -1.7233 5.1536 -9.0716 27 6 0.5951 3.9318 -4.7925 28 7 0.8971 3.3572 -3.6499 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.8288 -0.0530 2.9544 35 1 2.2721 2.1230 -1.9977 36 1 -1.9107 3.8727 -1.9164 37 1 -2.5464 4.9872 -4.0440 38 1 0.0896 7.8059 -7.8240 39 1 -1.0932 7.8042 -9.1544 40 1 -1.6091 7.3811 -7.5045 41 1 0.8852 4.7012 -9.7187 42 1 0.3639 6.2388 -10.4478 43 1 1.5466 6.2404 -9.1173 44 1 -2.5366 5.2203 -8.3490 45 1 -2.0205 5.6438 -9.9988 46 1 -1.4986 4.1057 -9.2701 47 1 1.3169 3.9350 -5.5959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592790628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:24 Heat of formation + Delta-G solvation = -94.587738 kcal Electronic energy + Delta-G solvation = -28468.015769 eV Core-core repulsion = 24422.886314 eV Total energy + Delta-G solvation = -4045.129455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31460 -40.31112 -38.60464 -37.26214 -35.16398 -34.49470 -33.07612 -32.22184 -31.75300 -30.74281 -27.79511 -27.78137 -27.24785 -25.76755 -23.78025 -23.19431 -22.47744 -20.77521 -20.08325 -19.41153 -18.34970 -17.76614 -17.20218 -16.40714 -16.33867 -16.05348 -15.29357 -15.15685 -14.94118 -14.68158 -14.65280 -14.28994 -13.99627 -13.71690 -13.60664 -13.24634 -12.88224 -12.73517 -12.64469 -12.58384 -12.35197 -12.29671 -12.04838 -11.85006 -11.65648 -11.53515 -11.26914 -10.97506 -10.85689 -10.76890 -10.50874 -10.33967 -10.22762 -10.19612 -9.93459 -9.65489 -9.38271 -9.22176 -9.05762 -8.51916 -7.88261 -6.13203 -4.22133 0.06533 1.01646 2.11276 2.22506 3.13310 3.24467 3.32465 3.35636 3.67840 3.97892 4.12007 4.28740 4.33063 4.36140 4.36586 4.50345 4.53235 4.69679 4.90384 5.09401 5.14640 5.18264 5.22365 5.31174 5.31819 5.43088 5.43880 5.55322 5.62429 5.74734 5.84259 5.86076 5.88829 6.13555 6.29111 6.37177 6.43177 6.62655 7.02052 7.14876 7.30170 7.36908 7.42834 7.52392 7.63244 7.73627 7.87782 8.14932 8.59864 8.73544 9.01672 9.44682 10.92328 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.002346 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.871522 B =11933.408859 C =12922.597543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.266 3.734 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.547 3.453 15 O -0.536 6.536 16 C 0.130 3.870 17 C -0.131 4.131 18 C -0.016 4.016 19 C -0.177 4.177 20 C 0.521 3.479 21 O -0.499 6.499 22 O -0.344 6.344 23 C 0.118 3.882 24 C -0.184 4.184 25 C -0.142 4.142 26 C -0.184 4.184 27 C 0.158 3.842 28 N -0.464 5.464 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 10.088 -21.674 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.324 5.324 14 C 0.329 3.671 15 O -0.414 6.414 16 C -0.008 4.008 17 C -0.151 4.151 18 C -0.042 4.042 19 C -0.181 4.181 20 C 0.366 3.634 21 O -0.388 6.388 22 O -0.262 6.262 23 C 0.083 3.917 24 C -0.241 4.241 25 C -0.199 4.199 26 C -0.241 4.241 27 C -0.003 4.003 28 N -0.175 5.175 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.177 0.823 37 H 0.171 0.829 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.090 9.702 -20.729 24.275 hybrid contribution 0.381 0.456 -0.528 0.795 sum -7.710 10.158 -21.256 24.788 Atomic orbital electron populations 1.21851 0.98361 0.98222 1.01129 1.21943 0.92600 0.99566 1.02528 1.18933 0.94591 0.89341 0.80626 0.92998 1.21259 0.90508 1.39122 1.06227 0.91828 1.24883 0.98692 0.94766 0.95336 1.69903 1.35075 1.37744 1.09264 0.86384 0.84771 0.77773 0.78138 1.19658 1.20912 1.20870 1.46466 1.13919 1.53142 1.18899 1.17823 0.83796 0.80135 0.85375 1.90771 1.51733 1.60311 1.38602 1.22118 0.90769 0.93964 0.93966 1.22172 0.97350 0.96968 0.98646 1.21719 0.98971 0.93025 0.90473 1.20310 0.98339 1.06173 0.93237 1.20818 0.82159 0.76685 0.83757 1.90739 1.23629 1.42523 1.81950 1.86589 1.44887 1.71648 1.23035 1.22236 0.95886 0.92390 0.81231 1.22503 1.03590 0.94174 1.03852 1.21866 0.97306 1.03541 0.97155 1.22506 0.98167 1.00930 1.02518 1.23212 0.93400 0.89179 0.94517 1.67785 1.33946 1.15901 0.99831 0.93016 0.94483 0.95672 0.94822 0.88070 0.92597 0.76496 0.82297 0.82908 0.91799 0.90927 0.89786 0.91252 0.90238 0.91242 0.89785 0.90928 0.91810 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.64 2.24 -69.09 -0.15 6.49 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.88 -24.39 11.30 55.43 0.63 -23.77 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -14.36 5.01 -55.73 -0.28 -14.64 16 14 C 0.55 10.92 6.39 -12.10 -0.08 10.84 16 15 O -0.54 -11.96 13.44 5.37 0.07 -11.89 16 16 C 0.13 2.09 6.75 -82.93 -0.56 1.53 16 17 C -0.13 -1.74 9.62 -39.11 -0.38 -2.12 16 18 C -0.02 -0.18 9.71 -38.88 -0.38 -0.56 16 19 C -0.18 -2.02 5.89 -104.74 -0.62 -2.64 16 20 C 0.52 5.76 7.22 34.69 0.25 6.01 16 21 O -0.50 -6.07 11.95 -19.22 -0.23 -6.30 16 22 O -0.34 -3.38 9.16 -40.48 -0.37 -3.75 16 23 C 0.12 0.94 1.13 -90.62 -0.10 0.83 16 24 C -0.18 -1.41 8.37 37.16 0.31 -1.09 16 25 C -0.14 -0.81 8.85 37.16 0.33 -0.48 16 26 C -0.18 -1.40 8.37 37.16 0.31 -1.09 16 27 C 0.16 1.87 10.78 -17.16 -0.18 1.68 16 28 N -0.46 -6.84 9.52 -9.46 -0.09 -6.93 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 30 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 2.68 5.96 -51.93 -0.31 2.37 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.40 7.87 7.86 -40.82 -0.32 7.55 16 36 H 0.16 2.02 7.63 -52.48 -0.40 1.61 16 37 H 0.15 1.43 7.73 -52.49 -0.41 1.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.80 5.88 -51.93 -0.31 0.50 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.80 5.88 -51.93 -0.31 0.49 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.17 1.61 7.62 -52.48 -0.40 1.21 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -29.74 383.51 -7.87 -37.61 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.89 Total: 7.54 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.47 Total: 0.86 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.26 Total: -45.34 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.53 Total: -21.94 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.74 -7.87 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592790628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.980 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds