Wall clock time and date at job start Tue Mar 31 2020 17:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21492 * 120.00051 * 359.97438 * 14 13 3 16 16 C 1.48348 * 120.00327 * 180.02562 * 14 13 3 17 17 C 1.39308 * 119.56747 * 179.72868 * 16 14 13 18 18 C 1.38442 * 119.19544 * 179.72950 * 17 16 14 19 19 C 1.39912 * 118.35102 * 0.52795 * 18 17 16 20 20 C 1.47897 * 120.46710 * 179.75427 * 19 18 17 21 21 O 1.21441 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.34696 * 119.99756 * 179.97438 * 20 19 18 23 23 C 1.45205 * 116.99802 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.46996 * 59.99909 * 23 22 20 25 25 C 1.53000 * 109.47033 * 180.02562 * 23 22 20 26 26 C 1.52998 * 109.46945 * 299.99965 * 23 22 20 27 27 C 1.39771 * 119.06560 * 359.72995 * 19 18 17 28 28 N 1.31411 * 120.71442 * 359.97438 * 27 19 18 29 29 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 30 30 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 31 31 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 36 36 H 1.08003 * 120.39668 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.82525 * 180.25905 * 18 17 16 38 38 H 1.08996 * 109.47239 * 60.00574 * 24 23 22 39 39 H 1.09005 * 109.46869 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.47487 * 300.00061 * 24 23 22 41 41 H 1.09005 * 109.47119 * 60.00493 * 25 23 22 42 42 H 1.09005 * 109.46856 * 179.97438 * 25 23 22 43 43 H 1.08993 * 109.47037 * 299.99855 * 25 23 22 44 44 H 1.09005 * 109.47063 * 59.99980 * 26 23 22 45 45 H 1.09005 * 109.47250 * 179.97438 * 26 23 22 46 46 H 1.08996 * 109.47563 * 299.99936 * 26 23 22 47 47 H 1.08004 * 119.64665 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3408 2.6320 -0.4328 16 6 0.0427 3.3272 -2.6348 17 6 -1.2198 3.9054 -2.7459 18 6 -1.5761 4.5268 -3.9306 19 6 -0.6501 4.5386 -4.9793 20 6 -0.9838 5.1846 -6.2672 21 8 -2.0683 5.7093 -6.4202 22 8 -0.0849 5.1908 -7.2703 23 6 -0.4804 5.8434 -8.5057 24 6 -0.7958 7.3144 -8.2271 25 6 0.6610 5.7493 -9.5202 26 6 -1.7233 5.1536 -9.0716 27 6 0.5951 3.9318 -4.7925 28 7 0.8971 3.3572 -3.6499 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.8288 -0.0530 2.9544 35 1 2.2721 2.1230 -1.9977 36 1 -1.9107 3.8727 -1.9164 37 1 -2.5464 4.9872 -4.0440 38 1 0.0896 7.8059 -7.8240 39 1 -1.0932 7.8042 -9.1544 40 1 -1.6091 7.3811 -7.5045 41 1 0.8852 4.7012 -9.7187 42 1 0.3639 6.2388 -10.4478 43 1 1.5466 6.2404 -9.1173 44 1 -2.5366 5.2203 -8.3490 45 1 -2.0205 5.6438 -9.9988 46 1 -1.4986 4.1057 -9.2701 47 1 1.3169 3.9350 -5.5959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592790628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:23 Heat of formation + Delta-G solvation = -111.730202 kcal Electronic energy + Delta-G solvation = -28468.759122 eV Core-core repulsion = 24422.886314 eV Total energy + Delta-G solvation = -4045.872808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22042 -41.42959 -40.07384 -38.07372 -37.00813 -35.18374 -34.49507 -33.78972 -33.02304 -32.35093 -29.09985 -28.35614 -28.27440 -27.01211 -25.03366 -24.74654 -23.57604 -22.24854 -21.21661 -20.86100 -19.71622 -18.87089 -18.13316 -17.84585 -17.41275 -17.14438 -16.94422 -16.46393 -16.22507 -15.97613 -15.66041 -15.38758 -15.06219 -14.81720 -14.60702 -14.58108 -14.39233 -13.88774 -13.70778 -13.46796 -13.36800 -13.17256 -13.12053 -12.93629 -12.88603 -12.86139 -12.69976 -12.50320 -12.30899 -12.16355 -12.07154 -11.60849 -11.41941 -11.35487 -11.21771 -11.16943 -11.04507 -10.62652 -10.53279 -10.47532 -9.68419 -8.16024 -6.32695 -1.00087 0.03481 1.10950 1.44871 1.44943 1.46399 1.58271 1.88396 2.22646 2.46768 2.72741 3.03371 3.13730 3.41373 3.62150 3.71175 3.74972 3.78007 3.80624 3.96149 3.96835 4.49757 4.54480 4.56835 4.60261 4.63187 4.68481 4.74106 4.79186 4.80101 4.85235 4.90835 4.95250 5.06013 5.15501 5.24632 5.27649 5.28246 5.28441 5.42274 5.43994 5.51650 5.60044 5.77835 5.87918 6.15277 6.45253 6.63150 6.73237 6.90937 7.28771 7.44465 8.89618 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.002346 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.871522 B =11933.408859 C =12922.597543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.547 3.453 15 O -0.566 6.566 16 C 0.106 3.894 17 C -0.125 4.125 18 C -0.005 4.005 19 C -0.167 4.167 20 C 0.525 3.475 21 O -0.509 6.509 22 O -0.345 6.345 23 C 0.108 3.892 24 C -0.182 4.182 25 C -0.138 4.138 26 C -0.182 4.182 27 C 0.162 3.838 28 N -0.478 5.478 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.266 0.734 35 H 0.408 0.592 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.695 10.955 -24.640 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.328 5.328 14 C 0.331 3.669 15 O -0.446 6.446 16 C -0.030 4.030 17 C -0.145 4.145 18 C -0.030 4.030 19 C -0.170 4.170 20 C 0.369 3.631 21 O -0.399 6.399 22 O -0.263 6.263 23 C 0.073 3.927 24 C -0.239 4.239 25 C -0.195 4.195 26 C -0.239 4.239 27 C 0.001 3.999 28 N -0.189 5.189 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.180 0.820 37 H 0.194 0.806 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.684 10.579 -23.728 27.091 hybrid contribution 0.173 0.284 0.256 0.420 sum -7.510 10.862 -23.471 26.931 Atomic orbital electron populations 1.21690 0.96798 0.99403 1.00305 1.21791 0.93930 0.98819 1.01447 1.18534 0.93979 0.89436 0.80883 0.97559 1.21559 0.91278 1.39176 1.06581 0.91347 1.25732 1.03267 0.94316 0.94953 1.70040 1.36944 1.38347 1.09744 0.85331 0.79186 0.77872 0.78157 1.18662 1.20920 1.20330 1.46230 1.14908 1.53773 1.17898 1.18328 0.82754 0.79251 0.86557 1.90742 1.52366 1.61255 1.40270 1.21501 0.92316 0.96274 0.92950 1.22188 0.96247 0.96537 0.99565 1.21921 0.99799 0.91896 0.89385 1.20469 0.98034 1.05005 0.93533 1.20667 0.82137 0.76441 0.83829 1.90755 1.24121 1.42895 1.82160 1.86584 1.44534 1.71672 1.23463 1.22575 0.97017 0.92333 0.80770 1.22484 1.02829 0.94285 1.04310 1.21898 0.96436 1.03997 0.97194 1.22486 0.97301 1.01313 1.02795 1.23586 0.94110 0.88237 0.93970 1.67687 1.34093 1.16761 1.00392 0.94962 0.94108 0.93361 0.94205 0.90585 0.92511 0.75599 0.82008 0.80609 0.91718 0.88951 0.91865 0.91086 0.88185 0.91124 0.91861 0.88959 0.91674 0.78240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.27 14.21 2.24 44.25 0.10 14.31 16 4 H 0.01 0.39 7.58 -2.39 -0.02 0.38 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.95 5.30 84.66 0.45 1.40 16 8 N -0.91 -51.80 11.30 21.45 0.24 -51.56 16 9 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 N -0.68 -29.62 5.01 -448.52 -2.25 -31.87 16 14 C 0.55 22.39 6.39 86.94 0.56 22.95 16 15 O -0.57 -26.23 13.44 -3.69 -0.05 -26.28 16 16 C 0.11 3.40 6.75 41.96 0.28 3.69 16 17 C -0.12 -3.22 9.62 22.58 0.22 -3.01 16 18 C 0.00 -0.09 9.71 22.72 0.22 0.13 16 19 C -0.17 -3.46 5.89 -19.94 -0.12 -3.58 16 20 C 0.52 10.50 7.22 70.38 0.51 11.01 16 21 O -0.51 -11.49 11.95 20.03 0.24 -11.25 16 22 O -0.35 -5.98 9.16 -56.05 -0.51 -6.49 16 23 C 0.11 1.44 1.13 -10.79 -0.01 1.43 16 24 C -0.18 -2.38 8.37 71.98 0.60 -1.78 16 25 C -0.14 -1.15 8.85 71.98 0.64 -0.52 16 26 C -0.18 -2.36 8.37 71.98 0.60 -1.75 16 27 C 0.16 3.51 10.78 85.13 0.92 4.43 16 28 N -0.48 -13.65 9.52 -183.85 -1.75 -15.40 16 29 H 0.03 1.53 7.84 -2.39 -0.02 1.51 16 30 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 4.17 5.96 -2.39 -0.01 4.15 16 34 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 35 H 0.41 16.28 7.86 -92.71 -0.73 15.55 16 36 H 0.16 4.05 7.63 -2.91 -0.02 4.03 16 37 H 0.18 2.84 7.73 -2.91 -0.02 2.82 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.06 1.11 5.88 -2.39 -0.01 1.10 16 41 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 1.11 5.88 -2.38 -0.01 1.09 16 45 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 47 H 0.20 3.17 7.62 -2.91 -0.02 3.15 16 Total: -1.00 -65.89 383.51 4.18 -61.71 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.26 Total: 28.02 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.97 Total: 8.85 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -3.75 Total: -98.82 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.32 Total: -44.02 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.89 4.18 -61.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592790628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.021 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds