Wall clock time and date at job start Tue Mar 31 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 H 1.09000 * 109.47089 * 305.00496 * 3 2 1 5 5 C 1.52996 * 109.47292 * 184.99837 * 3 2 1 6 6 O 1.42902 * 109.46979 * 64.99924 * 3 2 1 7 7 C 1.35679 * 117.00381 * 210.00063 * 6 3 2 8 8 C 1.38894 * 119.62652 * 179.97438 * 7 6 3 9 9 C 1.39574 * 118.94519 * 180.02562 * 8 7 6 10 10 C 1.48167 * 120.88786 * 180.02562 * 9 8 7 11 11 O 1.21507 * 120.00138 * 6.92031 * 10 9 8 12 12 N 1.34777 * 119.99579 * 186.92587 * 10 9 8 13 13 C 1.47017 * 125.65223 * 354.92641 * 12 10 9 14 14 C 1.54323 * 107.40427 * 178.82941 * 13 12 10 15 15 C 1.55398 * 102.82716 * 337.97736 * 14 13 12 16 16 O 1.42905 * 110.89163 * 277.26583 * 15 14 13 17 17 C 1.50696 * 111.07342 * 153.48877 * 15 14 13 18 18 H 1.08004 * 119.99967 * 277.79996 * 17 15 14 19 19 C 1.37878 * 120.00297 * 97.80122 * 17 15 14 20 20 N 1.31513 * 120.00017 * 169.93626 * 19 17 15 21 21 Si 1.86791 * 119.99808 * 349.93191 * 19 17 15 22 22 H 1.48498 * 109.47217 * 91.94825 * 21 19 17 23 23 H 1.48507 * 109.47293 * 211.94877 * 21 19 17 24 24 H 1.48508 * 109.47326 * 331.94929 * 21 19 17 25 25 C 1.47424 * 125.64382 * 174.88363 * 12 10 9 26 26 C 1.39963 * 118.22047 * 0.27676 * 9 8 7 27 27 C 1.37980 * 119.12899 * 359.47662 * 26 9 8 28 28 N 1.31910 * 120.98131 * 0.53468 * 27 26 9 29 29 H 1.08996 * 109.47332 * 299.99859 * 1 2 3 30 30 H 1.09004 * 109.46893 * 59.99986 * 1 2 3 31 31 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47142 * 240.00259 * 2 1 3 33 33 H 1.08998 * 109.46992 * 120.00426 * 2 1 3 34 34 H 1.09001 * 109.46954 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47089 * 300.00408 * 5 3 2 36 36 H 1.08999 * 109.46762 * 60.00460 * 5 3 2 37 37 H 1.08005 * 120.52482 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.88317 * 298.32532 * 13 12 10 39 39 H 1.08997 * 109.88374 * 59.33127 * 13 12 10 40 40 H 1.09000 * 110.71828 * 96.24605 * 14 13 12 41 41 H 1.08998 * 110.72240 * 219.52115 * 14 13 12 42 42 H 0.96694 * 114.00390 * 178.03461 * 16 15 14 43 43 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 44 44 H 1.08998 * 110.37179 * 323.00297 * 25 12 10 45 45 H 1.09003 * 110.36401 * 85.21729 * 25 12 10 46 46 H 1.07997 * 120.43733 * 179.72891 * 26 9 8 47 47 H 1.08006 * 119.50815 * 180.23512 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.4506 3.4208 1.1758 8 6 1.0805 4.0970 2.3312 9 6 0.8662 5.4748 2.2682 10 6 0.4708 6.2389 3.4745 11 8 0.4509 5.6932 4.5600 12 7 0.1330 7.5393 3.3677 13 6 0.2136 8.3477 2.1423 14 6 -0.3013 9.7610 2.4871 15 6 -1.1716 9.5126 3.7503 16 8 -2.4805 9.0680 3.3879 17 6 -1.2429 10.7477 4.6107 18 1 -0.4423 10.9728 5.2998 19 6 -2.3302 11.5905 4.5183 20 7 -2.4922 12.5538 5.3989 21 14 -3.5730 11.3641 3.1424 22 1 -4.6680 10.4745 3.6058 23 1 -4.1358 12.6845 2.7613 24 1 -2.9034 10.7532 1.9660 25 6 -0.3794 8.3863 4.4600 26 6 1.0297 6.1143 1.0340 27 6 1.4043 5.3683 -0.0646 28 7 1.5984 4.0672 0.0323 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9282 2.4719 -0.1252 35 1 3.9994 0.9052 0.7161 36 1 3.8531 0.9570 -1.0571 37 1 0.9597 3.5650 3.2633 38 1 1.2476 8.4026 1.8018 39 1 -0.4094 7.9056 1.3649 40 1 0.5293 10.4286 2.7168 41 1 -0.9050 10.1610 1.6725 42 1 -3.0518 8.8706 4.1426 43 1 -3.2574 13.1464 5.3341 44 1 -1.0384 7.8104 5.1097 45 1 0.4468 8.8055 5.0344 46 1 0.8687 7.1784 0.9437 47 1 1.5359 5.8562 -1.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:16 Heat of formation + Delta-G solvation = -63.821610 kcal Electronic energy + Delta-G solvation = -29062.894866 eV Core-core repulsion = 25019.099530 eV Total energy + Delta-G solvation = -4043.795336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07414 -39.85311 -38.39260 -37.60101 -35.13945 -34.47886 -32.77415 -32.43194 -30.87471 -30.39079 -30.04668 -28.49307 -26.03868 -24.73652 -23.92110 -23.59707 -22.46420 -21.33588 -20.08843 -19.86866 -18.46711 -17.66528 -17.28463 -16.17738 -15.98382 -15.80964 -15.57566 -15.37536 -15.19584 -14.67835 -14.64732 -14.27037 -14.14982 -14.02645 -13.66843 -13.52077 -13.45934 -12.87845 -12.77392 -12.52884 -12.40462 -12.21781 -12.07585 -12.07344 -11.70473 -11.43330 -11.20657 -11.10316 -11.01725 -10.91831 -10.62148 -10.42292 -10.33132 -10.11583 -9.99556 -9.55276 -9.39540 -8.74200 -8.65579 -8.61107 -8.23541 -6.29001 -4.39859 0.63808 1.00972 2.67969 2.94932 3.24260 3.35660 3.46509 3.63813 3.74302 4.06640 4.37938 4.39363 4.42425 4.62695 4.74850 4.81144 4.84993 4.91599 4.98136 5.01508 5.06673 5.21211 5.26223 5.26689 5.37990 5.42235 5.52267 5.55309 5.60661 5.61209 5.66804 5.74168 5.81916 5.84824 5.95926 5.97725 5.98603 6.19050 6.35231 6.43657 6.57610 6.61457 6.92940 7.08623 7.32542 7.62876 7.72024 8.00207 8.25821 8.52662 8.72056 9.31423 10.79874 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.002480 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.805786 B =11288.520304 C =11376.036718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.169 4.169 6 O -0.298 6.298 7 C 0.318 3.682 8 C -0.137 4.137 9 C -0.042 4.042 10 C 0.565 3.435 11 O -0.538 6.538 12 N -0.596 5.596 13 C 0.088 3.912 14 C -0.123 4.123 15 C 0.221 3.779 16 O -0.558 6.558 17 C -0.555 4.555 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.882 5.882 21 Si 0.948 3.052 22 H -0.294 1.294 23 H -0.325 1.325 24 H -0.267 1.267 25 C 0.089 3.911 26 C -0.215 4.215 27 C 0.134 3.866 28 N -0.530 5.530 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.373 0.627 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.175 0.825 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 -18.525 -13.950 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.226 4.226 6 O -0.205 6.205 7 C 0.140 3.860 8 C -0.159 4.159 9 C -0.053 4.053 10 C 0.353 3.647 11 O -0.416 6.416 12 N -0.328 5.328 13 C -0.035 4.035 14 C -0.161 4.161 15 C 0.181 3.819 16 O -0.366 6.366 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.134 4.134 20 N -0.516 5.516 21 Si 0.783 3.217 22 H -0.222 1.222 23 H -0.257 1.257 24 H -0.193 1.193 25 C -0.032 4.032 26 C -0.235 4.235 27 C -0.021 4.021 28 N -0.255 5.255 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.169 0.831 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.222 0.778 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.191 0.809 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.891 -19.321 -14.369 25.668 hybrid contribution -0.990 0.402 0.426 1.150 sum 7.902 -18.920 -13.943 24.795 Atomic orbital electron populations 1.21764 0.95164 1.01828 1.02423 1.21690 0.96848 0.94264 1.03077 1.22418 0.95199 0.93097 0.86402 0.89196 1.22215 0.95084 1.02942 1.02406 1.86301 1.82473 1.15871 1.35895 1.19577 0.92346 0.84739 0.89386 1.21100 1.02907 0.93153 0.98726 1.20152 0.97602 0.93258 0.94241 1.17721 0.78362 0.80732 0.87854 1.90765 1.54005 1.68863 1.27954 1.48424 1.62598 1.08698 1.13091 1.22624 0.99947 0.93469 0.87434 1.23066 0.99952 0.93238 0.99852 1.20264 0.79456 0.91013 0.91212 1.86183 1.25623 1.86843 1.37935 1.21091 1.08259 1.06226 1.23677 0.89906 1.25160 0.98023 0.94358 0.95840 1.69973 1.29627 1.18220 1.33829 0.85682 0.79517 0.73664 0.82805 1.22213 1.25657 1.19284 1.23246 0.98703 0.91904 0.89375 1.23591 1.02535 1.04703 0.92636 1.22409 0.93259 0.87672 0.98758 1.67097 1.19956 1.11921 1.26495 0.92059 0.92776 0.92444 0.90070 0.90915 0.91923 0.91972 0.91146 0.83107 0.91195 0.90744 0.89342 0.89886 0.77832 0.92273 0.90856 0.90524 0.80882 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.86 16 2 C -0.12 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.09 0.80 2.49 -26.73 -0.07 0.73 16 4 H 0.09 0.89 6.98 -51.93 -0.36 0.53 16 5 C -0.17 -1.38 9.53 37.16 0.35 -1.03 16 6 O -0.30 -3.61 9.30 -18.74 -0.17 -3.79 16 7 C 0.32 4.18 7.45 -17.16 -0.13 4.05 16 8 C -0.14 -1.96 9.61 -38.84 -0.37 -2.33 16 9 C -0.04 -0.62 5.90 -104.67 -0.62 -1.23 16 10 C 0.57 10.00 7.83 -12.18 -0.10 9.91 16 11 O -0.54 -11.12 16.76 5.36 0.09 -11.03 16 12 N -0.60 -10.30 3.33 -171.90 -0.57 -10.87 16 13 C 0.09 1.27 4.88 -3.07 -0.01 1.26 16 14 C -0.12 -2.16 6.02 -24.76 -0.15 -2.30 16 15 C 0.22 4.57 0.71 -89.49 -0.06 4.51 16 16 O -0.56 -11.54 8.62 -35.23 -0.30 -11.84 16 17 C -0.56 -13.91 8.86 -34.44 -0.31 -14.21 16 18 H 0.08 2.27 8.03 -52.48 -0.42 1.85 16 19 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 20 N -0.88 -25.16 13.96 55.43 0.77 -24.38 16 21 Si 0.95 22.06 24.76 -169.99 -4.21 17.85 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 24 H -0.27 -6.03 5.53 56.52 0.31 -5.72 16 25 C 0.09 1.73 6.08 -2.53 -0.02 1.72 16 26 C -0.21 -2.55 8.67 -39.03 -0.34 -2.89 16 27 C 0.13 1.42 11.17 -17.61 -0.20 1.22 16 28 N -0.53 -6.41 8.61 -13.38 -0.12 -6.52 16 29 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.15 2.18 7.76 -52.48 -0.41 1.78 16 38 H 0.07 0.82 6.89 -51.93 -0.36 0.46 16 39 H 0.07 1.00 6.60 -51.93 -0.34 0.65 16 40 H 0.09 1.50 8.04 -51.93 -0.42 1.09 16 41 H 0.08 1.47 7.05 -51.93 -0.37 1.10 16 42 H 0.37 7.15 8.36 45.56 0.38 7.53 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 45 H 0.08 1.51 8.01 -51.93 -0.42 1.09 16 46 H 0.17 1.82 2.94 -52.98 -0.16 1.66 16 47 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -31.18 375.12 -7.05 -38.23 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.30 Total: 7.42 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.89 Total: -0.72 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.09 Total: -41.78 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.39 Total: -26.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.21 Total: 17.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.18 -7.05 -38.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.588 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds