Wall clock time and date at job start Tue Mar 31 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 H 1.09000 * 109.47089 * 305.00496 * 3 2 1 5 5 C 1.52996 * 109.47292 * 184.99837 * 3 2 1 6 6 O 1.42902 * 109.46979 * 64.99924 * 3 2 1 7 7 C 1.35679 * 117.00381 * 210.00063 * 6 3 2 8 8 C 1.38894 * 119.62652 * 179.97438 * 7 6 3 9 9 C 1.39574 * 118.94519 * 180.02562 * 8 7 6 10 10 C 1.48167 * 120.88786 * 180.02562 * 9 8 7 11 11 O 1.21507 * 120.00138 * 6.92031 * 10 9 8 12 12 N 1.34777 * 119.99579 * 186.92587 * 10 9 8 13 13 C 1.47017 * 125.65223 * 354.92641 * 12 10 9 14 14 C 1.54323 * 107.40427 * 178.82941 * 13 12 10 15 15 C 1.55398 * 102.82716 * 337.97736 * 14 13 12 16 16 O 1.42905 * 110.89163 * 277.26583 * 15 14 13 17 17 C 1.50696 * 111.07342 * 153.48877 * 15 14 13 18 18 H 1.08004 * 119.99967 * 277.79996 * 17 15 14 19 19 C 1.37878 * 120.00297 * 97.80122 * 17 15 14 20 20 N 1.31513 * 120.00017 * 169.93626 * 19 17 15 21 21 Si 1.86791 * 119.99808 * 349.93191 * 19 17 15 22 22 H 1.48498 * 109.47217 * 91.94825 * 21 19 17 23 23 H 1.48507 * 109.47293 * 211.94877 * 21 19 17 24 24 H 1.48508 * 109.47326 * 331.94929 * 21 19 17 25 25 C 1.47424 * 125.64382 * 174.88363 * 12 10 9 26 26 C 1.39963 * 118.22047 * 0.27676 * 9 8 7 27 27 C 1.37980 * 119.12899 * 359.47662 * 26 9 8 28 28 N 1.31910 * 120.98131 * 0.53468 * 27 26 9 29 29 H 1.08996 * 109.47332 * 299.99859 * 1 2 3 30 30 H 1.09004 * 109.46893 * 59.99986 * 1 2 3 31 31 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47142 * 240.00259 * 2 1 3 33 33 H 1.08998 * 109.46992 * 120.00426 * 2 1 3 34 34 H 1.09001 * 109.46954 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47089 * 300.00408 * 5 3 2 36 36 H 1.08999 * 109.46762 * 60.00460 * 5 3 2 37 37 H 1.08005 * 120.52482 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.88317 * 298.32532 * 13 12 10 39 39 H 1.08997 * 109.88374 * 59.33127 * 13 12 10 40 40 H 1.09000 * 110.71828 * 96.24605 * 14 13 12 41 41 H 1.08998 * 110.72240 * 219.52115 * 14 13 12 42 42 H 0.96694 * 114.00390 * 178.03461 * 16 15 14 43 43 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 44 44 H 1.08998 * 110.37179 * 323.00297 * 25 12 10 45 45 H 1.09003 * 110.36401 * 85.21729 * 25 12 10 46 46 H 1.07997 * 120.43733 * 179.72891 * 26 9 8 47 47 H 1.08006 * 119.50815 * 180.23512 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.4506 3.4208 1.1758 8 6 1.0805 4.0970 2.3312 9 6 0.8662 5.4748 2.2682 10 6 0.4708 6.2389 3.4745 11 8 0.4509 5.6932 4.5600 12 7 0.1330 7.5393 3.3677 13 6 0.2136 8.3477 2.1423 14 6 -0.3013 9.7610 2.4871 15 6 -1.1716 9.5126 3.7503 16 8 -2.4805 9.0680 3.3879 17 6 -1.2429 10.7477 4.6107 18 1 -0.4423 10.9728 5.2998 19 6 -2.3302 11.5905 4.5183 20 7 -2.4922 12.5538 5.3989 21 14 -3.5730 11.3641 3.1424 22 1 -4.6680 10.4745 3.6058 23 1 -4.1358 12.6845 2.7613 24 1 -2.9034 10.7532 1.9660 25 6 -0.3794 8.3863 4.4600 26 6 1.0297 6.1143 1.0340 27 6 1.4043 5.3683 -0.0646 28 7 1.5984 4.0672 0.0323 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9282 2.4719 -0.1252 35 1 3.9994 0.9052 0.7161 36 1 3.8531 0.9570 -1.0571 37 1 0.9597 3.5650 3.2633 38 1 1.2476 8.4026 1.8018 39 1 -0.4094 7.9056 1.3649 40 1 0.5293 10.4286 2.7168 41 1 -0.9050 10.1610 1.6725 42 1 -3.0518 8.8706 4.1426 43 1 -3.2574 13.1464 5.3341 44 1 -1.0384 7.8104 5.1097 45 1 0.4468 8.8055 5.0344 46 1 0.8687 7.1784 0.9437 47 1 1.5359 5.8562 -1.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:15 Heat of formation + Delta-G solvation = -86.964436 kcal Electronic energy + Delta-G solvation = -29063.898414 eV Core-core repulsion = 25019.099530 eV Total energy + Delta-G solvation = -4044.798884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12063 -41.08054 -39.50454 -38.95675 -36.64975 -35.21077 -34.43872 -33.85549 -32.04526 -31.59892 -30.77643 -29.93218 -27.63235 -25.94739 -24.80038 -24.61343 -23.60452 -22.23468 -21.59904 -21.04187 -19.67166 -19.35126 -18.33684 -17.34835 -17.28698 -17.04799 -16.85723 -16.75272 -16.46455 -16.21317 -15.51246 -15.41210 -15.06520 -15.00140 -14.91271 -14.65214 -14.54011 -14.18363 -14.08062 -13.80299 -13.58641 -13.55995 -13.33327 -12.89951 -12.71227 -12.69530 -12.65218 -12.22840 -12.05314 -12.04260 -11.97723 -11.77034 -11.61503 -11.42237 -11.27993 -11.05874 -10.64828 -10.54374 -10.38347 -9.71996 -9.54910 -8.34581 -6.46893 -0.43257 0.08218 1.50189 1.56909 1.61016 1.72559 1.79260 2.10164 2.44779 2.73064 2.95196 3.16899 3.30814 3.44908 3.73330 3.75865 3.85912 3.95712 3.98717 4.00409 4.14995 4.19734 4.22676 4.38540 4.42793 4.47878 4.57948 4.62304 4.67303 4.71258 4.77873 4.79568 4.93486 4.97280 5.00591 5.03726 5.08632 5.14850 5.21182 5.21378 5.35302 5.36296 5.39348 5.51161 6.02057 6.22350 6.37539 6.58472 6.71452 6.84548 6.89418 7.28443 8.78522 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.002480 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.805786 B =11288.520304 C =11376.036718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.087 0.913 5 C -0.164 4.164 6 O -0.311 6.311 7 C 0.316 3.684 8 C -0.157 4.157 9 C -0.055 4.055 10 C 0.563 3.437 11 O -0.580 6.580 12 N -0.597 5.597 13 C 0.089 3.911 14 C -0.120 4.120 15 C 0.217 3.783 16 O -0.556 6.556 17 C -0.550 4.550 18 H 0.045 0.955 19 C 0.021 3.979 20 N -0.934 5.934 21 Si 1.009 2.991 22 H -0.288 1.288 23 H -0.339 1.339 24 H -0.248 1.248 25 C 0.096 3.904 26 C -0.205 4.205 27 C 0.147 3.853 28 N -0.529 5.529 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.378 0.622 43 H 0.268 0.732 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.193 0.807 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.193 -20.014 -18.084 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.105 0.895 5 C -0.222 4.222 6 O -0.219 6.219 7 C 0.138 3.862 8 C -0.179 4.179 9 C -0.066 4.066 10 C 0.353 3.647 11 O -0.462 6.462 12 N -0.327 5.327 13 C -0.032 4.032 14 C -0.158 4.158 15 C 0.176 3.824 16 O -0.365 6.365 17 C -0.587 4.587 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.571 5.571 21 Si 0.842 3.158 22 H -0.215 1.215 23 H -0.272 1.272 24 H -0.173 1.173 25 C -0.027 4.027 26 C -0.225 4.225 27 C -0.009 4.009 28 N -0.254 5.254 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.210 0.790 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.600 -20.845 -18.528 29.495 hybrid contribution -1.124 0.820 1.745 2.232 sum 8.476 -20.025 -16.783 27.468 Atomic orbital electron populations 1.21760 0.95658 1.02389 1.01353 1.21729 0.96374 0.93195 1.04223 1.22686 0.96043 0.93779 0.85183 0.89515 1.22192 0.94065 1.02326 1.03602 1.86295 1.82406 1.15598 1.37609 1.19558 0.92194 0.85198 0.89261 1.21025 1.04549 0.93418 0.98881 1.19925 0.99416 0.93141 0.94072 1.18214 0.77518 0.80618 0.88398 1.90736 1.55836 1.69697 1.29881 1.48413 1.62249 1.08722 1.13341 1.22872 1.02776 0.90977 0.86572 1.22992 0.99385 0.95471 0.97923 1.20195 0.80194 0.89313 0.92661 1.86151 1.25568 1.86522 1.38243 1.21309 1.06691 1.07634 1.23108 0.93645 1.25933 1.00059 0.94120 0.97750 1.70100 1.30847 1.20038 1.36147 0.84686 0.77466 0.72915 0.80701 1.21545 1.27178 1.17289 1.22918 0.98081 0.91816 0.89911 1.23756 1.01715 1.05493 0.91510 1.23156 0.90799 0.86958 0.99967 1.67242 1.19704 1.12759 1.25666 0.94278 0.92641 0.91109 0.87535 0.91061 0.93281 0.92095 0.88817 0.84719 0.87241 0.88327 0.89102 0.89198 0.77266 0.92372 0.92229 0.91603 0.79041 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.81 71.98 0.71 -1.52 16 2 C -0.12 -1.52 5.64 30.59 0.17 -1.35 16 3 C 0.08 1.33 2.49 30.59 0.08 1.41 16 4 H 0.09 1.53 6.98 -2.39 -0.02 1.51 16 5 C -0.16 -2.35 9.53 71.98 0.69 -1.66 16 6 O -0.31 -7.35 9.30 -89.97 -0.84 -8.19 16 7 C 0.32 7.92 7.45 84.80 0.63 8.55 16 8 C -0.16 -4.46 9.61 22.75 0.22 -4.24 16 9 C -0.05 -1.53 5.90 -19.90 -0.12 -1.65 16 10 C 0.56 19.63 7.83 86.88 0.68 20.31 16 11 O -0.58 -24.73 16.76 -3.74 -0.06 -24.80 16 12 N -0.60 -19.69 3.33 -816.05 -2.71 -22.41 16 13 C 0.09 2.23 4.88 86.73 0.42 2.65 16 14 C -0.12 -3.85 6.02 31.87 0.19 -3.66 16 15 C 0.22 8.77 0.71 -10.06 -0.01 8.77 16 16 O -0.56 -21.92 8.62 -148.98 -1.28 -23.21 16 17 C -0.55 -28.02 8.86 25.60 0.23 -27.80 16 18 H 0.05 2.60 8.03 -2.91 -0.02 2.58 16 19 C 0.02 1.15 5.46 84.66 0.46 1.61 16 20 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 21 Si 1.01 45.00 24.76 68.60 1.70 46.70 16 22 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.34 -15.86 7.11 99.48 0.71 -15.15 16 24 H -0.25 -10.20 5.53 99.48 0.55 -9.65 16 25 C 0.10 3.72 6.08 86.86 0.53 4.24 16 26 C -0.21 -4.05 8.67 22.63 0.20 -3.85 16 27 C 0.15 2.43 11.17 84.62 0.94 3.37 16 28 N -0.53 -11.21 8.61 -309.14 -2.66 -13.88 16 29 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 4.14 7.76 -2.91 -0.02 4.12 16 38 H 0.11 1.98 6.89 -2.39 -0.02 1.97 16 39 H 0.10 2.10 6.60 -2.39 -0.02 2.08 16 40 H 0.09 2.87 8.04 -2.39 -0.02 2.85 16 41 H 0.09 2.81 7.05 -2.39 -0.02 2.79 16 42 H 0.38 14.06 8.36 -74.06 -0.62 13.45 16 43 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 45 H 0.07 2.67 8.01 -2.39 -0.02 2.66 16 46 H 0.19 2.96 2.94 -3.38 -0.01 2.95 16 47 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -70.83 375.12 0.68 -70.15 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.22 Total: 25.04 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 6.02 Total: 5.20 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -5.08 Total: -90.90 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -2.18 Total: -56.19 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.70 Total: 46.70 kcal Total: -70.83 0.68 -70.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.812 kcal (2) G-P(sol) polarization free energy of solvation -70.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds