Wall clock time and date at job start Tue Mar 31 2020 18:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 H 1.08996 * 109.47104 * 305.00102 * 3 2 1 5 5 C 1.52998 * 109.47314 * 184.99401 * 3 2 1 6 6 O 1.42899 * 109.47067 * 64.99413 * 3 2 1 7 7 C 1.35681 * 117.00217 * 209.99750 * 6 3 2 8 8 C 1.38898 * 119.62668 * 180.02562 * 7 6 3 9 9 C 1.39569 * 118.94982 * 180.02562 * 8 7 6 10 10 C 1.48158 * 120.89299 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00544 * 205.12200 * 10 9 8 12 12 N 1.34781 * 120.00138 * 25.11582 * 10 9 8 13 13 C 1.47423 * 125.64548 * 356.41812 * 12 10 9 14 14 C 1.54911 * 104.83204 * 155.90861 * 13 12 10 15 15 C 1.55152 * 101.58168 * 37.00850 * 14 13 12 16 16 O 1.42897 * 110.72490 * 83.04089 * 15 14 13 17 17 C 1.50702 * 110.71608 * 206.13653 * 15 14 13 18 18 H 1.08001 * 120.00232 * 357.56207 * 17 15 14 19 19 C 1.37885 * 120.00005 * 177.28141 * 17 15 14 20 20 N 1.31514 * 119.99637 * 0.27553 * 19 17 15 21 21 Si 1.86796 * 120.00101 * 180.27546 * 19 17 15 22 22 H 1.48497 * 109.47380 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46989 * 120.00083 * 21 19 17 24 24 H 1.48495 * 109.47029 * 239.99943 * 21 19 17 25 25 C 1.47317 * 125.61774 * 176.63781 * 12 10 9 26 26 C 1.39968 * 118.21747 * 0.27661 * 9 8 7 27 27 C 1.37985 * 119.13175 * 359.47957 * 26 9 8 28 28 N 1.31916 * 120.97403 * 0.53169 * 27 26 9 29 29 H 1.09006 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47688 * 299.99931 * 1 2 3 31 31 H 1.08997 * 109.46891 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.47211 * 239.99543 * 2 1 3 33 33 H 1.09006 * 109.46703 * 119.99813 * 2 1 3 34 34 H 1.08996 * 109.47607 * 300.00393 * 5 3 2 35 35 H 1.09002 * 109.46985 * 60.00380 * 5 3 2 36 36 H 1.09000 * 109.47203 * 179.97438 * 5 3 2 37 37 H 1.08006 * 120.52281 * 359.97438 * 8 7 6 38 38 H 1.08997 * 110.36828 * 37.06373 * 13 12 10 39 39 H 1.09009 * 110.36473 * 274.74475 * 13 12 10 40 40 H 1.08999 * 111.00406 * 278.93128 * 14 13 12 41 41 H 1.09005 * 111.03487 * 155.09649 * 14 13 12 42 42 H 0.96700 * 114.00262 * 182.43782 * 16 15 14 43 43 H 0.96996 * 120.00105 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.06177 * 61.68195 * 25 12 10 45 45 H 1.09002 * 109.85187 * 300.42430 * 25 12 10 46 46 H 1.07993 * 120.43301 * 179.70015 * 26 9 8 47 47 H 1.07998 * 119.51156 * 180.25611 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1256 6 8 1.6618 2.0814 1.2210 7 6 1.4504 3.4209 1.1756 8 6 1.0812 4.0973 2.3312 9 6 0.8669 5.4750 2.2683 10 6 0.4724 6.2394 3.4746 11 8 -0.1387 7.2834 3.3596 12 7 0.7912 5.7767 4.6997 13 6 1.4606 4.4949 4.9866 14 6 2.1376 4.7008 6.3647 15 6 1.0875 5.5748 7.1001 16 8 0.0573 4.7606 7.6636 17 6 1.7445 6.4136 8.1659 18 1 2.8043 6.3190 8.3507 19 6 0.9935 7.3061 8.9012 20 7 -0.2971 7.4214 8.6760 21 14 1.8091 8.3514 10.2170 22 1 3.2589 8.0348 10.2726 23 1 1.6291 9.7887 9.8895 24 1 1.1880 8.0623 11.5344 25 6 0.5240 6.4665 5.9736 26 6 1.0294 6.1144 1.0338 27 6 1.4031 5.3682 -0.0651 28 7 1.5972 4.0670 0.0320 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9994 0.9054 0.7162 35 1 3.8532 0.9571 -1.0570 36 1 3.9280 2.4721 -0.1260 37 1 0.9611 3.5654 3.2635 38 1 2.2093 4.2790 4.2245 39 1 0.7290 3.6885 5.0400 40 1 3.0836 5.2320 6.2597 41 1 2.2810 3.7490 6.8763 42 1 -0.6439 5.2613 8.1025 43 1 -0.8255 8.0490 9.1935 44 1 -0.5494 6.6001 6.1085 45 1 1.0241 7.4350 5.9821 46 1 0.8679 7.1783 0.9433 47 1 1.5343 5.8560 -1.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:19 Heat of formation + Delta-G solvation = -81.875639 kcal Electronic energy + Delta-G solvation = -29343.642047 eV Core-core repulsion = 25299.063830 eV Total energy + Delta-G solvation = -4044.578217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96328 -39.54666 -38.27765 -37.20584 -34.56413 -34.40079 -32.65787 -32.24501 -30.61918 -30.16660 -29.89214 -27.93869 -25.84066 -24.58143 -24.16709 -23.11523 -22.58874 -21.22194 -19.95623 -19.52154 -18.08930 -17.25795 -16.84368 -16.49629 -15.90050 -15.89068 -15.56898 -14.92482 -14.77672 -14.70816 -14.38516 -14.11790 -13.93451 -13.86379 -13.42270 -13.25816 -13.01654 -12.92808 -12.73679 -12.23716 -12.16040 -12.07306 -11.99519 -11.58091 -11.52934 -11.36384 -11.09789 -10.97959 -10.85351 -10.81653 -10.73832 -10.50880 -10.25731 -10.01663 -9.87646 -9.44278 -9.34934 -8.72264 -8.58584 -8.37299 -8.03431 -6.33425 -4.42030 0.76564 1.08962 2.82123 3.09326 3.17430 3.26707 3.29931 3.40397 3.81760 4.12712 4.23542 4.46931 4.63261 4.69685 4.83406 4.88098 4.94840 4.96827 5.07422 5.14042 5.28436 5.30464 5.33573 5.48828 5.53060 5.62663 5.63334 5.66954 5.73680 5.79695 5.82767 5.91581 5.92249 5.99922 6.04285 6.17026 6.28274 6.42265 6.69022 6.76440 6.82738 7.15806 7.18346 7.30105 7.68805 7.69978 7.93742 8.03305 8.49657 8.62269 9.25680 9.35283 10.74463 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002829 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.325417 B = 9896.420017 C =10591.009387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.089 0.911 5 C -0.169 4.169 6 O -0.297 6.297 7 C 0.320 3.680 8 C -0.174 4.174 9 C -0.037 4.037 10 C 0.559 3.441 11 O -0.538 6.538 12 N -0.598 5.598 13 C 0.090 3.910 14 C -0.118 4.118 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.102 3.898 26 C -0.161 4.161 27 C 0.133 3.867 28 N -0.532 5.532 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.385 0.615 43 H 0.270 0.730 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.147 0.853 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -11.014 -17.295 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.107 0.893 5 C -0.227 4.227 6 O -0.204 6.204 7 C 0.141 3.859 8 C -0.195 4.195 9 C -0.048 4.048 10 C 0.347 3.653 11 O -0.417 6.417 12 N -0.330 5.330 13 C -0.032 4.032 14 C -0.156 4.156 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.019 4.019 26 C -0.182 4.182 27 C -0.022 4.022 28 N -0.257 5.257 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.178 0.822 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.236 0.764 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.165 0.835 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.566 -11.476 -18.084 21.899 hybrid contribution -0.203 1.622 1.413 2.161 sum 4.363 -9.854 -16.670 19.850 Atomic orbital electron populations 1.21764 0.95193 1.01814 1.02397 1.21690 0.96823 0.94285 1.03095 1.22407 0.95189 0.93081 0.86415 0.89273 1.22216 0.95093 1.02945 1.02409 1.86306 1.82437 1.15861 1.35845 1.19620 0.92199 0.84684 0.89380 1.21903 1.04346 0.93865 0.99407 1.20300 0.96680 0.92918 0.94928 1.17752 0.80588 0.85031 0.81978 1.90769 1.41155 1.23765 1.85971 1.48806 1.56765 1.21136 1.06278 1.22755 0.96008 0.86078 0.98382 1.22794 0.98505 1.01251 0.93081 1.19500 0.84545 0.86243 0.88966 1.86093 1.38070 1.38842 1.76399 1.21547 0.95788 1.21553 1.18683 0.91394 1.25085 0.94970 0.96271 0.96997 1.69645 1.05640 1.37105 1.40971 0.86333 0.79666 0.79802 0.81034 1.19569 1.20759 1.20700 1.23197 1.01556 0.97006 0.80115 1.22083 1.01826 1.02448 0.91848 1.22335 0.93632 0.87698 0.98544 1.67091 1.20271 1.11740 1.26565 0.92464 0.92005 0.92853 0.90137 0.90829 0.91879 0.91231 0.91927 0.82213 0.90994 0.90997 0.90347 0.90218 0.76421 0.91946 0.91210 0.91167 0.83541 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.12 -0.95 5.64 -26.73 -0.15 -1.10 16 3 C 0.09 0.83 2.49 -26.73 -0.07 0.76 16 4 H 0.09 0.91 6.98 -51.93 -0.36 0.55 16 5 C -0.17 -1.45 9.53 37.16 0.35 -1.10 16 6 O -0.30 -3.68 9.30 -18.75 -0.17 -3.85 16 7 C 0.32 4.30 7.45 -17.16 -0.13 4.18 16 8 C -0.17 -2.51 8.00 -38.84 -0.31 -2.82 16 9 C -0.04 -0.59 5.75 -104.68 -0.60 -1.20 16 10 C 0.56 11.08 7.70 -12.18 -0.09 10.99 16 11 O -0.54 -12.35 17.03 5.35 0.09 -12.26 16 12 N -0.60 -12.08 3.33 -171.27 -0.57 -12.65 16 13 C 0.09 1.55 5.02 -2.53 -0.01 1.54 16 14 C -0.12 -2.28 6.23 -24.58 -0.15 -2.44 16 15 C 0.25 5.83 0.85 -89.94 -0.08 5.75 16 16 O -0.58 -14.34 13.08 -35.23 -0.46 -14.80 16 17 C -0.54 -13.72 8.11 -34.44 -0.28 -14.00 16 18 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 19 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 20 N -0.89 -23.39 10.96 55.43 0.61 -22.78 16 21 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.10 2.41 5.39 -2.90 -0.02 2.40 16 26 C -0.16 -2.16 9.68 -39.03 -0.38 -2.54 16 27 C 0.13 1.50 11.17 -17.61 -0.20 1.31 16 28 N -0.53 -6.68 8.61 -13.38 -0.12 -6.79 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.16 2.25 4.52 -52.48 -0.24 2.01 16 38 H 0.07 1.06 6.06 -51.93 -0.31 0.75 16 39 H 0.07 1.19 7.37 -51.92 -0.38 0.81 16 40 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.38 9.73 7.24 45.56 0.33 10.06 16 43 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 44 H 0.07 1.80 8.00 -51.93 -0.42 1.38 16 45 H 0.07 1.79 7.81 -51.93 -0.41 1.39 16 46 H 0.15 1.86 7.92 -52.49 -0.42 1.44 16 47 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -29.19 382.30 -8.10 -37.29 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.38 Total: 12.45 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.84 Total: 2.51 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.08 Total: -42.23 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.54 Total: -30.92 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.19 -8.10 -37.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.587 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds