Wall clock time and date at job start Tue Mar 31 2020 18:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 H 1.08996 * 109.47104 * 305.00102 * 3 2 1 5 5 C 1.52998 * 109.47314 * 184.99401 * 3 2 1 6 6 O 1.42899 * 109.47067 * 64.99413 * 3 2 1 7 7 C 1.35681 * 117.00217 * 209.99750 * 6 3 2 8 8 C 1.38898 * 119.62668 * 180.02562 * 7 6 3 9 9 C 1.39569 * 118.94982 * 180.02562 * 8 7 6 10 10 C 1.48158 * 120.89299 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00544 * 205.12200 * 10 9 8 12 12 N 1.34781 * 120.00138 * 25.11582 * 10 9 8 13 13 C 1.47423 * 125.64548 * 356.41812 * 12 10 9 14 14 C 1.54911 * 104.83204 * 155.90861 * 13 12 10 15 15 C 1.55152 * 101.58168 * 37.00850 * 14 13 12 16 16 O 1.42897 * 110.72490 * 83.04089 * 15 14 13 17 17 C 1.50702 * 110.71608 * 206.13653 * 15 14 13 18 18 H 1.08001 * 120.00232 * 357.56207 * 17 15 14 19 19 C 1.37885 * 120.00005 * 177.28141 * 17 15 14 20 20 N 1.31514 * 119.99637 * 0.27553 * 19 17 15 21 21 Si 1.86796 * 120.00101 * 180.27546 * 19 17 15 22 22 H 1.48497 * 109.47380 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46989 * 120.00083 * 21 19 17 24 24 H 1.48495 * 109.47029 * 239.99943 * 21 19 17 25 25 C 1.47317 * 125.61774 * 176.63781 * 12 10 9 26 26 C 1.39968 * 118.21747 * 0.27661 * 9 8 7 27 27 C 1.37985 * 119.13175 * 359.47957 * 26 9 8 28 28 N 1.31916 * 120.97403 * 0.53169 * 27 26 9 29 29 H 1.09006 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47688 * 299.99931 * 1 2 3 31 31 H 1.08997 * 109.46891 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.47211 * 239.99543 * 2 1 3 33 33 H 1.09006 * 109.46703 * 119.99813 * 2 1 3 34 34 H 1.08996 * 109.47607 * 300.00393 * 5 3 2 35 35 H 1.09002 * 109.46985 * 60.00380 * 5 3 2 36 36 H 1.09000 * 109.47203 * 179.97438 * 5 3 2 37 37 H 1.08006 * 120.52281 * 359.97438 * 8 7 6 38 38 H 1.08997 * 110.36828 * 37.06373 * 13 12 10 39 39 H 1.09009 * 110.36473 * 274.74475 * 13 12 10 40 40 H 1.08999 * 111.00406 * 278.93128 * 14 13 12 41 41 H 1.09005 * 111.03487 * 155.09649 * 14 13 12 42 42 H 0.96700 * 114.00262 * 182.43782 * 16 15 14 43 43 H 0.96996 * 120.00105 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.06177 * 61.68195 * 25 12 10 45 45 H 1.09002 * 109.85187 * 300.42430 * 25 12 10 46 46 H 1.07993 * 120.43301 * 179.70015 * 26 9 8 47 47 H 1.07998 * 119.51156 * 180.25611 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1256 6 8 1.6618 2.0814 1.2210 7 6 1.4504 3.4209 1.1756 8 6 1.0812 4.0973 2.3312 9 6 0.8669 5.4750 2.2683 10 6 0.4724 6.2394 3.4746 11 8 -0.1387 7.2834 3.3596 12 7 0.7912 5.7767 4.6997 13 6 1.4606 4.4949 4.9866 14 6 2.1376 4.7008 6.3647 15 6 1.0875 5.5748 7.1001 16 8 0.0573 4.7606 7.6636 17 6 1.7445 6.4136 8.1659 18 1 2.8043 6.3190 8.3507 19 6 0.9935 7.3061 8.9012 20 7 -0.2971 7.4214 8.6760 21 14 1.8091 8.3514 10.2170 22 1 3.2589 8.0348 10.2726 23 1 1.6291 9.7887 9.8895 24 1 1.1880 8.0623 11.5344 25 6 0.5240 6.4665 5.9736 26 6 1.0294 6.1144 1.0338 27 6 1.4031 5.3682 -0.0651 28 7 1.5972 4.0670 0.0320 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9994 0.9054 0.7162 35 1 3.8532 0.9571 -1.0570 36 1 3.9280 2.4721 -0.1260 37 1 0.9611 3.5654 3.2635 38 1 2.2093 4.2790 4.2245 39 1 0.7290 3.6885 5.0400 40 1 3.0836 5.2320 6.2597 41 1 2.2810 3.7490 6.8763 42 1 -0.6439 5.2613 8.1025 43 1 -0.8255 8.0490 9.1935 44 1 -0.5494 6.6001 6.1085 45 1 1.0241 7.4350 5.9821 46 1 0.8679 7.1783 0.9433 47 1 1.5343 5.8560 -1.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:18 Heat of formation + Delta-G solvation = -102.143989 kcal Electronic energy + Delta-G solvation = -29344.520949 eV Core-core repulsion = 25299.063830 eV Total energy + Delta-G solvation = -4045.457119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08784 -40.94911 -39.43120 -38.79753 -36.30252 -35.16920 -34.22573 -33.87937 -31.78634 -31.51687 -30.71744 -29.65548 -27.51542 -25.97552 -24.99761 -24.19930 -23.90296 -22.16079 -21.53736 -20.93348 -19.32686 -19.11404 -18.04383 -17.76064 -17.35840 -17.05475 -16.83063 -16.54013 -16.27116 -16.08141 -15.49011 -15.09317 -14.97999 -14.84339 -14.78749 -14.75353 -14.60911 -14.12064 -13.85282 -13.58798 -13.50908 -13.37309 -13.09969 -12.86372 -12.85333 -12.65008 -12.44535 -12.37194 -12.26853 -12.14355 -12.00453 -11.74891 -11.57412 -11.42938 -11.21544 -11.01397 -10.72212 -10.57658 -10.31694 -9.77023 -9.53927 -8.28960 -6.44654 -0.40375 0.07526 1.39353 1.43074 1.53569 1.63751 1.78833 2.01486 2.36710 2.70134 2.97522 3.16322 3.34273 3.68598 3.80240 3.83723 3.93192 4.02617 4.03159 4.07879 4.14336 4.23172 4.27429 4.46074 4.47514 4.54773 4.63031 4.63235 4.70850 4.71948 4.83228 4.94044 5.01124 5.04574 5.05219 5.07845 5.13700 5.16859 5.25484 5.31120 5.37589 5.40714 5.45544 5.72017 6.01613 6.23827 6.43310 6.62992 6.70550 6.90878 7.26063 7.33994 8.77472 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002829 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.325417 B = 9896.420017 C =10591.009387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.085 0.915 5 C -0.165 4.165 6 O -0.305 6.305 7 C 0.321 3.679 8 C -0.180 4.180 9 C -0.053 4.053 10 C 0.557 3.443 11 O -0.580 6.580 12 N -0.603 5.603 13 C 0.098 3.902 14 C -0.113 4.113 15 C 0.234 3.766 16 O -0.587 6.587 17 C -0.556 4.556 18 H 0.068 0.932 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.278 1.278 25 C 0.119 3.881 26 C -0.165 4.165 27 C 0.151 3.849 28 N -0.529 5.529 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.161 0.839 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.377 0.623 43 H 0.271 0.729 44 H 0.036 0.964 45 H 0.040 0.960 46 H 0.151 0.849 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -12.651 -19.337 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.103 0.897 5 C -0.222 4.222 6 O -0.213 6.213 7 C 0.142 3.858 8 C -0.201 4.201 9 C -0.063 4.063 10 C 0.346 3.654 11 O -0.461 6.461 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.151 4.151 15 C 0.194 3.806 16 O -0.396 6.396 17 C -0.594 4.594 18 H 0.087 0.913 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.789 3.211 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.203 1.203 25 C -0.004 4.004 26 C -0.185 4.185 27 C -0.005 4.005 28 N -0.253 5.253 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.178 0.822 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.168 0.832 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.283 -13.166 -20.136 24.865 hybrid contribution -0.743 2.095 1.945 2.954 sum 5.539 -11.071 -18.191 22.004 Atomic orbital electron populations 1.21765 0.95711 1.02355 1.01379 1.21725 0.96312 0.93180 1.04274 1.22682 0.96053 0.93767 0.85195 0.89661 1.22193 0.94038 1.02346 1.03643 1.86304 1.82254 1.15268 1.37460 1.19628 0.91743 0.85249 0.89190 1.21799 1.04970 0.93215 1.00096 1.19975 0.99082 0.93410 0.93876 1.18411 0.79462 0.84727 0.82784 1.90731 1.42928 1.25779 1.86680 1.48827 1.57162 1.21917 1.05503 1.22885 0.96615 0.84759 0.98101 1.22799 0.97569 1.01143 0.93565 1.19702 0.85122 0.87123 0.88691 1.86083 1.38136 1.38933 1.76402 1.21863 0.95984 1.22152 1.19417 0.91344 1.25820 0.95485 0.97347 0.98889 1.69749 1.06625 1.37526 1.41663 0.85408 0.79049 0.77954 0.78649 1.18862 1.20993 1.20321 1.22709 0.98948 0.96301 0.82424 1.22255 1.01839 1.02936 0.91515 1.22965 0.91126 0.87058 0.99317 1.67243 1.19879 1.12182 1.25998 0.91199 0.94088 0.92770 0.87679 0.90852 0.91838 0.89003 0.93288 0.82191 0.87856 0.90051 0.89621 0.88744 0.77271 0.91987 0.94509 0.94120 0.83171 0.77634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.81 71.98 0.71 -1.57 16 2 C -0.12 -1.53 5.64 30.59 0.17 -1.36 16 3 C 0.08 1.34 2.49 30.59 0.08 1.41 16 4 H 0.09 1.52 6.98 -2.39 -0.02 1.51 16 5 C -0.16 -2.38 9.53 71.98 0.69 -1.69 16 6 O -0.31 -6.98 9.30 -89.99 -0.84 -7.82 16 7 C 0.32 7.99 7.45 84.80 0.63 8.63 16 8 C -0.18 -4.96 8.00 22.75 0.18 -4.78 16 9 C -0.05 -1.65 5.75 -19.90 -0.11 -1.76 16 10 C 0.56 22.57 7.70 86.88 0.67 23.24 16 11 O -0.58 -27.73 17.03 -3.77 -0.06 -27.80 16 12 N -0.60 -24.88 3.33 -814.06 -2.71 -27.59 16 13 C 0.10 3.28 5.02 86.86 0.44 3.72 16 14 C -0.11 -4.27 6.23 31.99 0.20 -4.08 16 15 C 0.23 11.22 0.85 -10.35 -0.01 11.21 16 16 O -0.59 -29.46 13.08 -148.98 -1.95 -31.41 16 17 C -0.56 -28.83 8.11 25.60 0.21 -28.62 16 18 H 0.07 3.46 7.77 -2.91 -0.02 3.43 16 19 C 0.03 1.32 5.27 84.66 0.45 1.77 16 20 N -0.92 -49.48 10.96 21.45 0.24 -49.24 16 21 Si 0.96 41.77 29.54 68.60 2.03 43.80 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 C 0.12 5.87 5.39 86.67 0.47 6.34 16 26 C -0.16 -4.16 9.68 22.63 0.22 -3.94 16 27 C 0.15 2.94 11.17 84.62 0.94 3.89 16 28 N -0.53 -11.82 8.61 -309.14 -2.66 -14.48 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.04 0.76 7.82 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.16 4.30 4.52 -2.91 -0.01 4.29 16 38 H 0.10 2.86 6.06 -2.39 -0.01 2.85 16 39 H 0.08 2.60 7.37 -2.38 -0.02 2.59 16 40 H 0.09 3.09 8.03 -2.39 -0.02 3.08 16 41 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 42 H 0.38 19.87 7.24 -74.06 -0.54 19.33 16 43 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.04 2.02 8.00 -2.38 -0.02 2.00 16 45 H 0.04 2.20 7.81 -2.39 -0.02 2.18 16 46 H 0.15 3.66 7.92 -2.91 -0.02 3.64 16 47 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -65.34 382.30 0.41 -64.92 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.45 Total: 37.21 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.92 Total: 12.41 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -5.14 Total: -91.32 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -2.85 Total: -67.02 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -65.34 0.41 -64.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.219 kcal (2) G-P(sol) polarization free energy of solvation -65.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds