Wall clock time and date at job start Tue Mar 31 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47006 * 2 1 4 4 H 1.09008 * 109.46971 * 55.00607 * 3 2 1 5 5 C 1.53006 * 109.47142 * 174.99822 * 3 2 1 6 6 O 1.42891 * 109.47409 * 294.99986 * 3 2 1 7 7 C 1.35695 * 117.00169 * 149.99902 * 6 3 2 8 8 C 1.38890 * 119.62298 * 180.02562 * 7 6 3 9 9 C 1.39582 * 118.94264 * 179.72349 * 8 7 6 10 10 C 1.48157 * 120.88918 * 179.97438 * 9 8 7 11 11 O 1.21514 * 120.00070 * 154.86464 * 10 9 8 12 12 N 1.34779 * 120.00381 * 334.87199 * 10 9 8 13 13 C 1.47429 * 125.64698 * 3.60463 * 12 10 9 14 14 C 1.54900 * 104.83609 * 204.09802 * 13 12 10 15 15 C 1.55159 * 101.58188 * 322.99207 * 14 13 12 16 16 O 1.42895 * 110.72274 * 277.13924 * 15 14 13 17 17 C 1.50702 * 110.71902 * 154.04045 * 15 14 13 18 18 H 1.07996 * 120.00161 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99978 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99594 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00357 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47220 * 89.99430 * 21 19 17 23 23 H 1.48495 * 109.47365 * 210.00030 * 21 19 17 24 24 H 1.48508 * 109.46898 * 329.99840 * 21 19 17 25 25 C 1.47022 * 125.65208 * 183.30769 * 12 10 9 26 26 C 1.39959 * 118.21762 * 0.02562 * 9 8 7 27 27 C 1.37984 * 119.13544 * 0.02562 * 26 9 8 28 28 N 1.31902 * 120.97506 * 0.02562 * 27 26 9 29 29 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46649 * 299.99809 * 1 2 3 31 31 H 1.09000 * 109.47141 * 59.99492 * 1 2 3 32 32 H 1.09004 * 109.47124 * 240.00422 * 2 1 3 33 33 H 1.09000 * 109.47141 * 120.00508 * 2 1 3 34 34 H 1.09006 * 109.46793 * 60.00048 * 5 3 2 35 35 H 1.08994 * 109.47294 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47216 * 300.00701 * 5 3 2 37 37 H 1.07997 * 120.52709 * 359.74328 * 8 7 6 38 38 H 1.09000 * 110.36626 * 322.93953 * 13 12 10 39 39 H 1.09001 * 110.36056 * 85.14716 * 13 12 10 40 40 H 1.09000 * 111.00328 * 81.06498 * 14 13 12 41 41 H 1.09003 * 111.00875 * 204.91723 * 14 13 12 42 42 H 0.96697 * 114.00406 * 180.02562 * 16 15 14 43 43 H 0.97001 * 119.99744 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.87988 * 298.39143 * 25 12 10 45 45 H 1.08997 * 109.88030 * 59.55698 * 25 12 10 46 46 H 1.07998 * 120.43266 * 179.97438 * 26 9 8 47 47 H 1.08003 * 119.51054 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 8 1.6620 2.0814 -1.2209 7 6 1.4506 3.4210 -1.1755 8 6 1.0805 4.0972 -2.3309 9 6 0.8610 5.4741 -2.2667 10 6 0.4653 6.2383 -3.4728 11 8 -0.1500 7.2798 -3.3574 12 7 0.7877 5.7783 -4.6979 13 6 1.4621 4.4992 -4.9854 14 6 2.1407 4.7092 -6.3619 15 6 1.0889 5.5805 -7.0981 16 8 0.0603 4.7637 -7.6609 17 6 1.7441 6.4198 -8.1646 18 1 2.8104 6.3557 -8.3230 19 6 0.9821 7.2695 -8.9381 20 7 -0.3166 7.3471 -8.7455 21 14 1.7940 8.3093 -10.2606 22 1 1.8088 7.5580 -11.5414 23 1 1.0313 9.5713 -10.4357 24 1 3.1875 8.6251 -9.8559 25 6 0.5196 6.4660 -5.9694 26 6 1.0257 6.1137 -1.0327 27 6 1.3965 5.3670 0.0668 28 7 1.5964 4.0670 -0.0316 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9995 0.9053 -0.7161 35 1 3.9282 2.4720 0.1262 36 1 3.8532 0.9570 1.0571 37 1 0.9641 3.5660 -3.2639 38 1 2.2104 4.2849 -4.2223 39 1 0.7337 3.6901 -5.0391 40 1 3.0846 5.2436 -6.2547 41 1 2.2879 3.7583 -6.8742 42 1 -0.6224 5.2602 -8.1326 43 1 -0.8528 7.9446 -9.2900 44 1 -0.5546 6.5941 -6.1022 45 1 1.0146 7.4370 -5.9772 46 1 0.8654 7.1779 -0.9425 47 1 1.5249 5.8543 1.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:21 Heat of formation + Delta-G solvation = -81.875283 kcal Electronic energy + Delta-G solvation = -29336.797762 eV Core-core repulsion = 25292.219560 eV Total energy + Delta-G solvation = -4044.578202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96615 -39.55651 -38.28166 -37.20804 -34.57430 -34.40236 -32.66641 -32.21049 -30.62048 -30.17084 -29.89511 -27.95504 -25.84949 -24.58532 -24.16797 -23.11692 -22.58734 -21.22172 -19.95738 -19.51407 -18.09395 -17.28175 -16.84693 -16.49888 -15.90541 -15.88674 -15.56546 -14.93000 -14.79016 -14.70749 -14.38416 -14.11931 -13.92803 -13.86546 -13.42228 -13.25355 -13.03005 -12.90921 -12.73677 -12.24706 -12.15986 -12.06795 -11.99493 -11.57198 -11.53967 -11.36392 -11.09337 -10.97949 -10.85273 -10.81669 -10.73904 -10.53025 -10.25392 -10.02325 -9.87339 -9.44511 -9.36377 -8.71334 -8.58721 -8.38082 -8.03502 -6.34089 -4.42913 0.76390 1.08817 2.82106 3.08841 3.18079 3.26119 3.28532 3.40359 3.81514 4.12592 4.22968 4.46941 4.63026 4.69681 4.83350 4.88046 4.93964 4.96698 5.07202 5.14001 5.28548 5.30523 5.33585 5.48849 5.53187 5.62610 5.63365 5.67079 5.73884 5.80128 5.82763 5.92168 5.92646 5.99860 6.04320 6.17030 6.28159 6.42047 6.69042 6.75534 6.83298 7.15724 7.18554 7.29410 7.68753 7.69873 7.92510 8.02856 8.49213 8.61103 9.26152 9.38532 10.73717 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002822 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.955154 B = 9918.613710 C =10613.889205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.089 0.911 5 C -0.169 4.169 6 O -0.297 6.297 7 C 0.320 3.680 8 C -0.174 4.174 9 C -0.037 4.037 10 C 0.559 3.441 11 O -0.538 6.538 12 N -0.597 5.597 13 C 0.090 3.910 14 C -0.119 4.119 15 C 0.249 3.751 16 O -0.586 6.586 17 C -0.538 4.538 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.100 3.900 26 C -0.161 4.161 27 C 0.133 3.867 28 N -0.532 5.532 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.387 0.613 43 H 0.272 0.728 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.147 0.853 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 -10.884 17.330 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.107 0.893 5 C -0.227 4.227 6 O -0.204 6.204 7 C 0.141 3.859 8 C -0.195 4.195 9 C -0.048 4.048 10 C 0.347 3.653 11 O -0.417 6.417 12 N -0.329 5.329 13 C -0.032 4.032 14 C -0.157 4.157 15 C 0.209 3.791 16 O -0.396 6.396 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.021 4.021 26 C -0.182 4.182 27 C -0.022 4.022 28 N -0.257 5.257 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.178 0.822 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.239 0.761 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.165 0.835 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.617 -11.346 18.135 21.884 hybrid contribution -0.188 1.599 -1.441 2.160 sum 4.430 -9.748 16.694 19.833 Atomic orbital electron populations 1.21764 0.95191 1.01814 1.02398 1.21691 0.96824 0.94282 1.03095 1.22409 0.95190 0.93084 0.86417 0.89272 1.22217 0.95096 1.02942 1.02409 1.86308 1.82446 1.15843 1.35847 1.19622 0.92188 0.84687 0.89387 1.21904 1.04311 0.93891 0.99411 1.20295 0.96678 0.92920 0.94925 1.17751 0.80613 0.85005 0.81972 1.90768 1.41014 1.23920 1.85966 1.48712 1.56561 1.21341 1.06242 1.22757 0.95941 0.86136 0.98385 1.22801 0.98493 1.01282 0.93105 1.19484 0.84542 0.86217 0.88890 1.86073 1.39707 1.39173 1.74661 1.21516 0.95021 1.23403 1.17661 0.91407 1.25087 0.94974 0.96115 0.97122 1.69573 1.04924 1.38689 1.40306 0.86371 0.79474 0.79437 0.81468 1.20328 1.20964 1.19687 1.23162 1.01461 0.97093 0.80383 1.22080 1.01848 1.02426 0.91852 1.22332 0.93617 0.87710 0.98542 1.67088 1.20232 1.11773 1.26562 0.92463 0.92859 0.91999 0.90829 0.90137 0.91880 0.91928 0.91231 0.82206 0.91015 0.90985 0.90373 0.90199 0.76109 0.91828 0.91335 0.91240 0.83543 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.12 -0.95 5.64 -26.73 -0.15 -1.10 16 3 C 0.09 0.83 2.49 -26.73 -0.07 0.76 16 4 H 0.09 0.91 6.98 -51.92 -0.36 0.55 16 5 C -0.17 -1.45 9.53 37.16 0.35 -1.10 16 6 O -0.30 -3.68 9.30 -18.79 -0.17 -3.85 16 7 C 0.32 4.30 7.45 -17.16 -0.13 4.18 16 8 C -0.17 -2.51 8.00 -38.84 -0.31 -2.83 16 9 C -0.04 -0.59 5.75 -104.68 -0.60 -1.20 16 10 C 0.56 11.08 7.70 -12.19 -0.09 10.98 16 11 O -0.54 -12.33 17.03 5.35 0.09 -12.24 16 12 N -0.60 -12.06 3.33 -171.51 -0.57 -12.63 16 13 C 0.09 1.56 5.03 -2.53 -0.01 1.54 16 14 C -0.12 -2.30 6.23 -24.59 -0.15 -2.45 16 15 C 0.25 5.88 0.86 -89.93 -0.08 5.80 16 16 O -0.59 -14.48 13.07 -35.23 -0.46 -14.94 16 17 C -0.54 -13.73 8.12 -34.44 -0.28 -14.01 16 18 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 19 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 20 N -0.90 -23.42 10.97 55.43 0.61 -22.81 16 21 Si 0.91 20.13 29.54 -169.99 -5.02 15.10 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C 0.10 2.37 5.54 -3.06 -0.02 2.35 16 26 C -0.16 -2.16 9.68 -39.03 -0.38 -2.53 16 27 C 0.13 1.50 11.17 -17.61 -0.20 1.31 16 28 N -0.53 -6.67 8.61 -13.38 -0.12 -6.79 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.16 2.25 4.52 -52.49 -0.24 2.01 16 38 H 0.07 1.06 6.05 -51.93 -0.31 0.75 16 39 H 0.07 1.20 7.37 -51.93 -0.38 0.81 16 40 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.39 9.89 6.98 45.56 0.32 10.21 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.07 1.77 8.07 -51.93 -0.42 1.35 16 45 H 0.07 1.77 7.82 -51.93 -0.41 1.36 16 46 H 0.15 1.86 7.93 -52.49 -0.42 1.44 16 47 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -29.16 382.28 -8.11 -37.28 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.39 Total: 12.64 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.84 Total: 2.49 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.08 Total: -42.23 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.54 Total: -31.03 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.16 -8.11 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.598 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds