Wall clock time and date at job start Tue Mar 31 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47006 * 2 1 4 4 H 1.09008 * 109.46971 * 55.00607 * 3 2 1 5 5 C 1.53006 * 109.47142 * 174.99822 * 3 2 1 6 6 O 1.42891 * 109.47409 * 294.99986 * 3 2 1 7 7 C 1.35695 * 117.00169 * 149.99902 * 6 3 2 8 8 C 1.38890 * 119.62298 * 180.02562 * 7 6 3 9 9 C 1.39582 * 118.94264 * 179.72349 * 8 7 6 10 10 C 1.48157 * 120.88918 * 179.97438 * 9 8 7 11 11 O 1.21514 * 120.00070 * 154.86464 * 10 9 8 12 12 N 1.34779 * 120.00381 * 334.87199 * 10 9 8 13 13 C 1.47429 * 125.64698 * 3.60463 * 12 10 9 14 14 C 1.54900 * 104.83609 * 204.09802 * 13 12 10 15 15 C 1.55159 * 101.58188 * 322.99207 * 14 13 12 16 16 O 1.42895 * 110.72274 * 277.13924 * 15 14 13 17 17 C 1.50702 * 110.71902 * 154.04045 * 15 14 13 18 18 H 1.07996 * 120.00161 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99978 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99594 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00357 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47220 * 89.99430 * 21 19 17 23 23 H 1.48495 * 109.47365 * 210.00030 * 21 19 17 24 24 H 1.48508 * 109.46898 * 329.99840 * 21 19 17 25 25 C 1.47022 * 125.65208 * 183.30769 * 12 10 9 26 26 C 1.39959 * 118.21762 * 0.02562 * 9 8 7 27 27 C 1.37984 * 119.13544 * 0.02562 * 26 9 8 28 28 N 1.31902 * 120.97506 * 0.02562 * 27 26 9 29 29 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46649 * 299.99809 * 1 2 3 31 31 H 1.09000 * 109.47141 * 59.99492 * 1 2 3 32 32 H 1.09004 * 109.47124 * 240.00422 * 2 1 3 33 33 H 1.09000 * 109.47141 * 120.00508 * 2 1 3 34 34 H 1.09006 * 109.46793 * 60.00048 * 5 3 2 35 35 H 1.08994 * 109.47294 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47216 * 300.00701 * 5 3 2 37 37 H 1.07997 * 120.52709 * 359.74328 * 8 7 6 38 38 H 1.09000 * 110.36626 * 322.93953 * 13 12 10 39 39 H 1.09001 * 110.36056 * 85.14716 * 13 12 10 40 40 H 1.09000 * 111.00328 * 81.06498 * 14 13 12 41 41 H 1.09003 * 111.00875 * 204.91723 * 14 13 12 42 42 H 0.96697 * 114.00406 * 180.02562 * 16 15 14 43 43 H 0.97001 * 119.99744 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.87988 * 298.39143 * 25 12 10 45 45 H 1.08997 * 109.88030 * 59.55698 * 25 12 10 46 46 H 1.07998 * 120.43266 * 179.97438 * 26 9 8 47 47 H 1.08003 * 119.51054 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 8 1.6620 2.0814 -1.2209 7 6 1.4506 3.4210 -1.1755 8 6 1.0805 4.0972 -2.3309 9 6 0.8610 5.4741 -2.2667 10 6 0.4653 6.2383 -3.4728 11 8 -0.1500 7.2798 -3.3574 12 7 0.7877 5.7783 -4.6979 13 6 1.4621 4.4992 -4.9854 14 6 2.1407 4.7092 -6.3619 15 6 1.0889 5.5805 -7.0981 16 8 0.0603 4.7637 -7.6609 17 6 1.7441 6.4198 -8.1646 18 1 2.8104 6.3557 -8.3230 19 6 0.9821 7.2695 -8.9381 20 7 -0.3166 7.3471 -8.7455 21 14 1.7940 8.3093 -10.2606 22 1 1.8088 7.5580 -11.5414 23 1 1.0313 9.5713 -10.4357 24 1 3.1875 8.6251 -9.8559 25 6 0.5196 6.4660 -5.9694 26 6 1.0257 6.1137 -1.0327 27 6 1.3965 5.3670 0.0668 28 7 1.5964 4.0670 -0.0316 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9995 0.9053 -0.7161 35 1 3.9282 2.4720 0.1262 36 1 3.8532 0.9570 1.0571 37 1 0.9641 3.5660 -3.2639 38 1 2.2104 4.2849 -4.2223 39 1 0.7337 3.6901 -5.0391 40 1 3.0846 5.2436 -6.2547 41 1 2.2879 3.7583 -6.8742 42 1 -0.6224 5.2602 -8.1326 43 1 -0.8528 7.9446 -9.2900 44 1 -0.5546 6.5941 -6.1022 45 1 1.0146 7.4370 -5.9772 46 1 0.8654 7.1779 -0.9425 47 1 1.5249 5.8543 1.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:21 Heat of formation + Delta-G solvation = -102.069837 kcal Electronic energy + Delta-G solvation = -29337.673464 eV Core-core repulsion = 25292.219560 eV Total energy + Delta-G solvation = -4045.453903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09258 -40.95877 -39.43389 -38.80041 -36.32075 -35.16894 -34.19296 -33.88647 -31.79405 -31.51954 -30.71861 -29.67062 -27.52450 -25.97792 -24.99856 -24.19996 -23.90222 -22.16190 -21.53301 -20.93389 -19.33750 -19.13546 -18.04728 -17.75861 -17.35486 -17.06059 -16.82804 -16.55875 -16.27521 -16.07107 -15.49148 -15.08722 -14.98019 -14.83823 -14.79473 -14.75337 -14.60524 -14.11992 -13.86177 -13.58130 -13.50518 -13.38201 -13.10000 -12.85369 -12.85059 -12.65047 -12.45088 -12.35681 -12.29849 -12.14728 -12.00536 -11.75027 -11.57423 -11.43573 -11.22461 -11.01211 -10.71028 -10.57852 -10.32821 -9.77214 -9.54023 -8.29385 -6.45388 -0.40506 0.07455 1.40829 1.43105 1.52530 1.63329 1.78875 2.01381 2.36593 2.70053 2.96707 3.16197 3.34132 3.68849 3.80196 3.83849 3.93411 4.02580 4.03190 4.08109 4.14504 4.23120 4.27211 4.45981 4.47377 4.54700 4.62413 4.63166 4.70785 4.71912 4.83175 4.93019 5.01058 5.04552 5.05055 5.07859 5.13652 5.17011 5.25437 5.31563 5.37524 5.40649 5.44584 5.72335 6.00234 6.23778 6.42946 6.62062 6.70508 6.90489 7.26653 7.36004 8.76892 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002822 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.955154 B = 9918.613710 C =10613.889205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.085 0.915 5 C -0.165 4.165 6 O -0.305 6.305 7 C 0.321 3.679 8 C -0.180 4.180 9 C -0.053 4.053 10 C 0.557 3.443 11 O -0.579 6.579 12 N -0.602 5.602 13 C 0.098 3.902 14 C -0.113 4.113 15 C 0.235 3.765 16 O -0.589 6.589 17 C -0.557 4.557 18 H 0.069 0.931 19 C 0.025 3.975 20 N -0.917 5.917 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.117 3.883 26 C -0.164 4.164 27 C 0.151 3.849 28 N -0.528 5.528 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.379 0.621 43 H 0.272 0.728 44 H 0.035 0.965 45 H 0.041 0.959 46 H 0.151 0.849 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -12.471 19.382 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.103 0.897 5 C -0.222 4.222 6 O -0.213 6.213 7 C 0.142 3.858 8 C -0.201 4.201 9 C -0.063 4.063 10 C 0.346 3.654 11 O -0.461 6.461 12 N -0.333 5.333 13 C -0.024 4.024 14 C -0.151 4.151 15 C 0.194 3.806 16 O -0.398 6.398 17 C -0.595 4.595 18 H 0.087 0.913 19 C -0.175 4.175 20 N -0.557 5.557 21 Si 0.790 3.210 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.006 4.006 26 C -0.185 4.185 27 C -0.005 4.005 28 N -0.253 5.253 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.178 0.822 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.230 0.770 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.169 0.831 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.362 -12.986 20.199 24.842 hybrid contribution -0.737 2.055 -1.974 2.944 sum 5.625 -10.931 18.225 21.984 Atomic orbital electron populations 1.21765 0.95712 1.02354 1.01378 1.21725 0.96311 0.93181 1.04274 1.22684 0.96055 0.93767 0.85198 0.89657 1.22195 0.94038 1.02345 1.03642 1.86306 1.82266 1.15256 1.37464 1.19629 0.91737 0.85248 0.89199 1.21800 1.04950 0.93253 1.00093 1.19971 0.99078 0.93408 0.93881 1.18411 0.79488 0.84701 0.82769 1.90730 1.42770 1.25919 1.86670 1.48735 1.56969 1.22112 1.05472 1.22885 0.96533 0.84826 0.98122 1.22806 0.97565 1.01170 0.93574 1.19697 0.85116 0.87101 0.88649 1.86062 1.39817 1.39305 1.74645 1.21843 0.95271 1.23985 1.18399 0.91257 1.25830 0.95479 0.97179 0.99051 1.69677 1.05917 1.39128 1.40982 0.85440 0.78626 0.77790 0.79116 1.19756 1.21105 1.19180 1.22684 0.98852 0.96424 0.82680 1.22254 1.01837 1.02924 0.91509 1.22965 0.91106 0.87064 0.99325 1.67240 1.19842 1.12219 1.25989 0.91198 0.92772 0.94089 0.90857 0.87676 0.91843 0.93286 0.89002 0.82207 0.87857 0.90088 0.89595 0.88754 0.77001 0.91888 0.94680 0.94074 0.83148 0.77620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.81 71.98 0.71 -1.57 16 2 C -0.12 -1.53 5.64 30.60 0.17 -1.36 16 3 C 0.08 1.34 2.49 30.60 0.08 1.41 16 4 H 0.09 1.53 6.98 -2.38 -0.02 1.51 16 5 C -0.16 -2.38 9.53 71.98 0.69 -1.69 16 6 O -0.31 -6.99 9.30 -90.14 -0.84 -7.83 16 7 C 0.32 8.00 7.45 84.80 0.63 8.63 16 8 C -0.18 -4.97 8.00 22.75 0.18 -4.79 16 9 C -0.05 -1.64 5.75 -19.90 -0.11 -1.76 16 10 C 0.56 22.56 7.70 86.88 0.67 23.22 16 11 O -0.58 -27.67 17.03 -3.76 -0.06 -27.73 16 12 N -0.60 -24.85 3.33 -814.82 -2.71 -27.56 16 13 C 0.10 3.29 5.03 86.85 0.44 3.72 16 14 C -0.11 -4.30 6.23 31.98 0.20 -4.10 16 15 C 0.23 11.29 0.86 -10.35 -0.01 11.28 16 16 O -0.59 -29.81 13.07 -148.98 -1.95 -31.75 16 17 C -0.56 -28.88 8.12 25.60 0.21 -28.67 16 18 H 0.07 3.48 7.76 -2.91 -0.02 3.46 16 19 C 0.03 1.31 5.28 84.65 0.45 1.76 16 20 N -0.92 -49.53 10.97 21.45 0.24 -49.29 16 21 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.12 5.76 5.54 86.73 0.48 6.24 16 26 C -0.16 -4.15 9.68 22.63 0.22 -3.93 16 27 C 0.15 2.94 11.17 84.62 0.94 3.89 16 28 N -0.53 -11.81 8.61 -309.13 -2.66 -14.47 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.77 7.82 -2.39 -0.02 0.75 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.16 4.31 4.52 -2.91 -0.01 4.30 16 38 H 0.10 2.86 6.05 -2.39 -0.01 2.85 16 39 H 0.08 2.61 7.37 -2.39 -0.02 2.59 16 40 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 41 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.38 20.19 6.98 -74.06 -0.52 19.67 16 43 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.03 1.93 8.07 -2.39 -0.02 1.91 16 45 H 0.04 2.21 7.82 -2.39 -0.02 2.20 16 46 H 0.15 3.65 7.93 -2.91 -0.02 3.63 16 47 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -65.30 382.28 0.45 -64.85 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.47 Total: 37.78 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.94 Total: 12.29 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -5.14 Total: -91.32 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -2.85 Total: -67.31 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -65.30 0.45 -64.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.216 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds