Wall clock time and date at job start Tue Mar 31 2020 18:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 H 1.08994 * 109.47557 * 54.99907 * 3 2 1 5 5 C 1.53007 * 109.47191 * 175.00050 * 3 2 1 6 6 O 1.42902 * 109.47014 * 294.99895 * 3 2 1 7 7 C 1.35685 * 116.99958 * 150.00341 * 6 3 2 8 8 C 1.38898 * 119.62739 * 180.02562 * 7 6 3 9 9 C 1.39564 * 118.95184 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.89340 * 180.02562 * 9 8 7 11 11 O 1.21512 * 119.99984 * 196.92977 * 10 9 8 12 12 N 1.34776 * 119.99890 * 16.92914 * 10 9 8 13 13 C 1.47423 * 125.64792 * 5.61911 * 12 10 9 14 14 C 1.55127 * 104.71845 * 155.81879 * 13 12 10 15 15 C 1.55154 * 101.49304 * 37.29505 * 14 13 12 16 16 O 1.42900 * 110.72020 * 82.68974 * 15 14 13 17 17 C 1.50699 * 110.87665 * 205.89886 * 15 14 13 18 18 H 1.08001 * 119.99781 * 355.06118 * 17 15 14 19 19 C 1.37880 * 119.99753 * 175.06256 * 17 15 14 20 20 N 1.31510 * 120.00480 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99490 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46960 * 90.00212 * 21 19 17 23 23 H 1.48497 * 109.46934 * 209.99693 * 21 19 17 24 24 H 1.48495 * 109.47205 * 330.00165 * 21 19 17 25 25 C 1.47026 * 125.64626 * 185.92718 * 12 10 9 26 26 C 1.39967 * 118.21508 * 0.02562 * 9 8 7 27 27 C 1.37980 * 119.13604 * 359.97438 * 26 9 8 28 28 N 1.31905 * 120.97556 * 0.26008 * 27 26 9 29 29 H 1.09001 * 109.46608 * 60.00109 * 1 2 3 30 30 H 1.08994 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47015 * 300.00189 * 1 2 3 32 32 H 1.08997 * 109.47168 * 240.00308 * 2 1 3 33 33 H 1.08997 * 109.47276 * 119.99629 * 2 1 3 34 34 H 1.09007 * 109.46970 * 59.99812 * 5 3 2 35 35 H 1.08993 * 109.47122 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47007 * 300.00272 * 5 3 2 37 37 H 1.08004 * 120.52104 * 359.97438 * 8 7 6 38 38 H 1.09003 * 110.36505 * 274.74550 * 13 12 10 39 39 H 1.08996 * 110.36756 * 37.06983 * 13 12 10 40 40 H 1.08998 * 111.19668 * 279.18750 * 14 13 12 41 41 H 1.09003 * 110.93910 * 155.28888 * 14 13 12 42 42 H 0.96704 * 114.00273 * 185.02502 * 16 15 14 43 43 H 0.96993 * 120.00093 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.88287 * 300.43936 * 25 12 10 45 45 H 1.08999 * 109.88406 * 61.45469 * 25 12 10 46 46 H 1.08005 * 120.43548 * 179.97438 * 26 9 8 47 47 H 1.07999 * 119.50855 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5649 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4506 3.4209 -1.1757 8 6 1.0804 4.0972 -2.3311 9 6 0.8661 5.4748 -2.2683 10 6 0.4695 6.2388 -3.4742 11 8 0.5832 7.4484 -3.4917 12 7 -0.0172 5.5920 -4.5518 13 6 -0.3164 4.1504 -4.6259 14 6 -1.3786 4.0255 -5.7496 15 6 -0.8832 5.0908 -6.7630 16 8 0.1521 4.5577 -7.5914 17 6 -2.0241 5.6046 -7.6029 18 1 -3.0066 5.1671 -7.5047 19 6 -1.8135 6.6331 -8.4967 20 7 -0.6172 7.1661 -8.6160 21 14 -3.2276 7.2694 -9.5383 22 1 -3.9177 8.3691 -8.8173 23 1 -2.7009 7.7785 -10.8300 24 1 -4.1883 6.1666 -9.7955 25 6 -0.3318 6.2062 -5.8500 26 6 1.0359 6.1154 -1.0354 27 6 1.4053 5.3686 0.0645 28 7 1.6037 4.0682 -0.0335 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9995 0.9053 -0.7161 35 1 3.9282 2.4720 0.1253 36 1 3.8532 0.9571 1.0570 37 1 0.9604 3.5652 -3.2634 38 1 0.5815 3.5895 -4.8854 39 1 -0.7240 3.7983 -3.6783 40 1 -2.3741 4.2712 -5.3799 41 1 -1.3631 3.0292 -6.1913 42 1 0.5494 5.2050 -8.1900 43 1 -0.4690 7.8894 -9.2450 44 1 -1.0840 6.9841 -5.7195 45 1 0.5710 6.6333 -6.2866 46 1 0.8797 7.1803 -0.9461 47 1 1.5383 5.8567 1.0186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:24 Heat of formation + Delta-G solvation = -79.747230 kcal Electronic energy + Delta-G solvation = -29390.399671 eV Core-core repulsion = 25345.913749 eV Total energy + Delta-G solvation = -4044.485922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96064 -39.55729 -38.27689 -37.21111 -34.57581 -34.39226 -32.64646 -32.27078 -30.60801 -30.17029 -29.88149 -27.92966 -25.83950 -24.58654 -24.16520 -23.09394 -22.59952 -21.21844 -19.98092 -19.52236 -18.08526 -17.23148 -16.84328 -16.50594 -15.92950 -15.84399 -15.50001 -15.03336 -14.73445 -14.70744 -14.34350 -14.11074 -13.95255 -13.83866 -13.42752 -13.25297 -12.98306 -12.95498 -12.72521 -12.28733 -12.13525 -12.08234 -11.98871 -11.57204 -11.50267 -11.35304 -11.07181 -10.97294 -10.85385 -10.81078 -10.72893 -10.52940 -10.25754 -9.99730 -9.87809 -9.45585 -9.33055 -8.72104 -8.57759 -8.37685 -8.02483 -6.32428 -4.41098 0.75272 1.09800 2.83320 3.11238 3.19090 3.27018 3.29426 3.41360 3.84502 4.13309 4.24251 4.47560 4.63974 4.70245 4.83698 4.88813 4.95770 4.97462 5.08365 5.14477 5.27838 5.30980 5.34210 5.49294 5.53122 5.61589 5.63959 5.68042 5.74006 5.79199 5.83612 5.89485 5.92622 5.99891 6.05287 6.17877 6.29204 6.41809 6.68210 6.77525 6.84651 7.16650 7.19213 7.30069 7.68870 7.70647 7.94838 8.04033 8.50234 8.63029 9.24341 9.33624 10.75469 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002903 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.315650 B = 9642.087652 C =10559.791004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.089 0.911 5 C -0.169 4.169 6 O -0.297 6.297 7 C 0.319 3.681 8 C -0.177 4.177 9 C -0.039 4.039 10 C 0.560 3.440 11 O -0.537 6.537 12 N -0.599 5.599 13 C 0.092 3.908 14 C -0.118 4.118 15 C 0.248 3.752 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.103 3.897 26 C -0.160 4.160 27 C 0.132 3.868 28 N -0.532 5.532 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.383 0.617 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.148 0.852 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -10.659 17.331 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.107 0.893 5 C -0.227 4.227 6 O -0.204 6.204 7 C 0.140 3.860 8 C -0.198 4.198 9 C -0.050 4.050 10 C 0.347 3.653 11 O -0.416 6.416 12 N -0.331 5.331 13 C -0.031 4.031 14 C -0.156 4.156 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.018 4.018 26 C -0.181 4.181 27 C -0.023 4.023 28 N -0.256 5.256 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.181 0.819 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.233 0.767 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.165 0.835 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.930 -11.050 18.079 21.754 hybrid contribution -0.642 1.512 -1.371 2.140 sum 4.288 -9.538 16.708 19.710 Atomic orbital electron populations 1.21763 0.95140 1.01840 1.02416 1.21690 0.96868 0.94259 1.03082 1.22407 0.95159 0.93100 0.86415 0.89273 1.22218 0.95151 1.02925 1.02386 1.86308 1.82444 1.15866 1.35821 1.19638 0.92090 0.84716 0.89515 1.22083 1.04174 0.93822 0.99721 1.20313 0.97138 0.92699 0.94876 1.17746 0.78874 0.86730 0.81958 1.90762 1.55531 1.13219 1.82093 1.48730 1.61216 1.09993 1.13129 1.22782 0.98979 0.81781 0.99548 1.22836 0.97217 1.00847 0.94723 1.19504 0.85976 0.86977 0.86744 1.86112 1.54764 1.42361 1.56052 1.21485 0.95831 1.18265 1.22033 0.91464 1.25074 0.96252 0.95505 0.96434 1.69683 1.21114 1.25887 1.36594 0.86391 0.81891 0.79098 0.79484 1.20411 1.20968 1.19663 1.23128 1.00745 0.98270 0.79678 1.22105 1.01781 1.02320 0.91909 1.22332 0.93694 0.87729 0.98567 1.67088 1.20067 1.11778 1.26702 0.91944 0.92453 0.92859 0.90838 0.90158 0.91923 0.91952 0.91220 0.81854 0.90912 0.91104 0.90253 0.90232 0.76700 0.91945 0.91086 0.91277 0.83472 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -0.96 5.64 -26.73 -0.15 -1.11 16 3 C 0.09 0.84 2.48 -26.73 -0.07 0.77 16 4 H 0.09 0.92 6.98 -51.93 -0.36 0.55 16 5 C -0.17 -1.48 9.53 37.16 0.35 -1.13 16 6 O -0.30 -3.70 9.30 -18.76 -0.17 -3.88 16 7 C 0.32 4.32 7.45 -17.16 -0.13 4.19 16 8 C -0.18 -2.57 8.17 -38.84 -0.32 -2.89 16 9 C -0.04 -0.63 5.81 -104.68 -0.61 -1.24 16 10 C 0.56 11.10 7.75 -12.19 -0.09 11.01 16 11 O -0.54 -12.33 16.90 5.36 0.09 -12.24 16 12 N -0.60 -12.08 3.32 -171.38 -0.57 -12.65 16 13 C 0.09 1.57 4.94 -2.41 -0.01 1.56 16 14 C -0.12 -2.27 6.24 -24.47 -0.15 -2.43 16 15 C 0.25 5.82 0.85 -89.94 -0.08 5.74 16 16 O -0.58 -14.20 13.07 -35.23 -0.46 -14.66 16 17 C -0.54 -13.75 8.13 -34.44 -0.28 -14.03 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 20 N -0.89 -23.40 10.96 55.43 0.61 -22.79 16 21 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.10 2.42 5.24 -3.06 -0.02 2.41 16 26 C -0.16 -2.16 9.67 -39.03 -0.38 -2.54 16 27 C 0.13 1.50 11.17 -17.61 -0.20 1.30 16 28 N -0.53 -6.71 8.62 -13.38 -0.12 -6.83 16 29 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.16 2.32 4.07 -52.48 -0.21 2.11 16 38 H 0.07 1.19 7.07 -51.93 -0.37 0.83 16 39 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 40 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.38 9.55 7.45 45.56 0.34 9.89 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.07 1.83 7.81 -51.93 -0.41 1.43 16 45 H 0.07 1.77 7.92 -51.93 -0.41 1.36 16 46 H 0.15 1.89 7.83 -52.48 -0.41 1.48 16 47 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -29.17 381.91 -8.08 -37.25 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.34 Total: 12.41 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.85 Total: 2.45 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.08 Total: -42.27 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.54 Total: -30.78 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.17 -8.08 -37.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.499 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds