Wall clock time and date at job start Tue Mar 31 2020 18:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 H 1.08994 * 109.47557 * 54.99907 * 3 2 1 5 5 C 1.53007 * 109.47191 * 175.00050 * 3 2 1 6 6 O 1.42902 * 109.47014 * 294.99895 * 3 2 1 7 7 C 1.35685 * 116.99958 * 150.00341 * 6 3 2 8 8 C 1.38898 * 119.62739 * 180.02562 * 7 6 3 9 9 C 1.39564 * 118.95184 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.89340 * 180.02562 * 9 8 7 11 11 O 1.21512 * 119.99984 * 196.92977 * 10 9 8 12 12 N 1.34776 * 119.99890 * 16.92914 * 10 9 8 13 13 C 1.47423 * 125.64792 * 5.61911 * 12 10 9 14 14 C 1.55127 * 104.71845 * 155.81879 * 13 12 10 15 15 C 1.55154 * 101.49304 * 37.29505 * 14 13 12 16 16 O 1.42900 * 110.72020 * 82.68974 * 15 14 13 17 17 C 1.50699 * 110.87665 * 205.89886 * 15 14 13 18 18 H 1.08001 * 119.99781 * 355.06118 * 17 15 14 19 19 C 1.37880 * 119.99753 * 175.06256 * 17 15 14 20 20 N 1.31510 * 120.00480 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99490 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46960 * 90.00212 * 21 19 17 23 23 H 1.48497 * 109.46934 * 209.99693 * 21 19 17 24 24 H 1.48495 * 109.47205 * 330.00165 * 21 19 17 25 25 C 1.47026 * 125.64626 * 185.92718 * 12 10 9 26 26 C 1.39967 * 118.21508 * 0.02562 * 9 8 7 27 27 C 1.37980 * 119.13604 * 359.97438 * 26 9 8 28 28 N 1.31905 * 120.97556 * 0.26008 * 27 26 9 29 29 H 1.09001 * 109.46608 * 60.00109 * 1 2 3 30 30 H 1.08994 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47015 * 300.00189 * 1 2 3 32 32 H 1.08997 * 109.47168 * 240.00308 * 2 1 3 33 33 H 1.08997 * 109.47276 * 119.99629 * 2 1 3 34 34 H 1.09007 * 109.46970 * 59.99812 * 5 3 2 35 35 H 1.08993 * 109.47122 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47007 * 300.00272 * 5 3 2 37 37 H 1.08004 * 120.52104 * 359.97438 * 8 7 6 38 38 H 1.09003 * 110.36505 * 274.74550 * 13 12 10 39 39 H 1.08996 * 110.36756 * 37.06983 * 13 12 10 40 40 H 1.08998 * 111.19668 * 279.18750 * 14 13 12 41 41 H 1.09003 * 110.93910 * 155.28888 * 14 13 12 42 42 H 0.96704 * 114.00273 * 185.02502 * 16 15 14 43 43 H 0.96993 * 120.00093 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.88287 * 300.43936 * 25 12 10 45 45 H 1.08999 * 109.88406 * 61.45469 * 25 12 10 46 46 H 1.08005 * 120.43548 * 179.97438 * 26 9 8 47 47 H 1.07999 * 119.50855 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5649 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4506 3.4209 -1.1757 8 6 1.0804 4.0972 -2.3311 9 6 0.8661 5.4748 -2.2683 10 6 0.4695 6.2388 -3.4742 11 8 0.5832 7.4484 -3.4917 12 7 -0.0172 5.5920 -4.5518 13 6 -0.3164 4.1504 -4.6259 14 6 -1.3786 4.0255 -5.7496 15 6 -0.8832 5.0908 -6.7630 16 8 0.1521 4.5577 -7.5914 17 6 -2.0241 5.6046 -7.6029 18 1 -3.0066 5.1671 -7.5047 19 6 -1.8135 6.6331 -8.4967 20 7 -0.6172 7.1661 -8.6160 21 14 -3.2276 7.2694 -9.5383 22 1 -3.9177 8.3691 -8.8173 23 1 -2.7009 7.7785 -10.8300 24 1 -4.1883 6.1666 -9.7955 25 6 -0.3318 6.2062 -5.8500 26 6 1.0359 6.1154 -1.0354 27 6 1.4053 5.3686 0.0645 28 7 1.6037 4.0682 -0.0335 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9995 0.9053 -0.7161 35 1 3.9282 2.4720 0.1253 36 1 3.8532 0.9571 1.0570 37 1 0.9604 3.5652 -3.2634 38 1 0.5815 3.5895 -4.8854 39 1 -0.7240 3.7983 -3.6783 40 1 -2.3741 4.2712 -5.3799 41 1 -1.3631 3.0292 -6.1913 42 1 0.5494 5.2050 -8.1900 43 1 -0.4690 7.8894 -9.2450 44 1 -1.0840 6.9841 -5.7195 45 1 0.5710 6.6333 -6.2866 46 1 0.8797 7.1803 -0.9461 47 1 1.5383 5.8567 1.0186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:23 Heat of formation + Delta-G solvation = -100.036559 kcal Electronic energy + Delta-G solvation = -29391.279482 eV Core-core repulsion = 25345.913749 eV Total energy + Delta-G solvation = -4045.365734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09431 -40.95739 -39.43422 -38.79588 -36.30690 -35.16145 -34.25108 -33.87295 -31.78650 -31.50590 -30.71648 -29.64076 -27.51569 -25.98988 -24.99683 -24.18577 -23.90594 -22.15992 -21.55156 -20.94426 -19.31897 -19.08380 -18.05169 -17.75819 -17.42731 -16.96687 -16.79373 -16.55416 -16.30828 -16.08134 -15.48920 -15.01536 -14.98084 -14.92090 -14.78741 -14.74657 -14.56114 -14.12226 -13.86131 -13.56696 -13.55285 -13.36176 -13.09745 -12.85977 -12.83316 -12.63826 -12.42533 -12.36215 -12.29375 -12.15322 -11.98892 -11.73169 -11.59136 -11.38863 -11.19865 -11.03397 -10.72197 -10.58097 -10.31414 -9.75377 -9.54086 -8.28363 -6.44001 -0.42628 0.07863 1.40404 1.42857 1.52342 1.67671 1.79937 2.00862 2.36959 2.71587 2.98349 3.16683 3.34268 3.67785 3.80447 3.83611 3.93066 4.02832 4.03066 4.07845 4.13803 4.23623 4.27542 4.45430 4.47257 4.55829 4.63454 4.63812 4.71667 4.72306 4.82165 4.95739 5.01524 5.04819 5.05405 5.09918 5.15015 5.18002 5.24023 5.31079 5.38276 5.42646 5.46490 5.71548 6.03129 6.23989 6.43851 6.63406 6.70600 6.91502 7.25248 7.33152 8.77847 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002903 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.315650 B = 9642.087652 C =10559.791004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.087 0.913 5 C -0.166 4.166 6 O -0.305 6.305 7 C 0.320 3.680 8 C -0.182 4.182 9 C -0.055 4.055 10 C 0.556 3.444 11 O -0.579 6.579 12 N -0.604 5.604 13 C 0.099 3.901 14 C -0.113 4.113 15 C 0.235 3.765 16 O -0.585 6.585 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.026 3.974 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.265 1.265 25 C 0.120 3.880 26 C -0.163 4.163 27 C 0.150 3.850 28 N -0.528 5.528 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.164 0.836 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.376 0.624 43 H 0.270 0.730 44 H 0.038 0.962 45 H 0.037 0.963 46 H 0.151 0.849 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -12.592 19.650 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.105 0.895 5 C -0.223 4.223 6 O -0.213 6.213 7 C 0.141 3.859 8 C -0.203 4.203 9 C -0.065 4.065 10 C 0.346 3.654 11 O -0.460 6.460 12 N -0.335 5.335 13 C -0.022 4.022 14 C -0.151 4.151 15 C 0.195 3.805 16 O -0.393 6.393 17 C -0.595 4.595 18 H 0.086 0.914 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.788 3.212 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.189 1.189 25 C -0.002 4.002 26 C -0.184 4.184 27 C -0.006 4.006 28 N -0.253 5.253 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.181 0.819 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.169 0.831 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.834 -13.039 20.412 24.699 hybrid contribution -0.567 2.088 -1.997 2.944 sum 4.267 -10.951 18.415 21.846 Atomic orbital electron populations 1.21764 0.95478 1.02401 1.01542 1.21722 0.96524 0.93052 1.04196 1.22682 0.95883 0.93865 0.85233 0.89543 1.22202 0.94282 1.02217 1.03605 1.86307 1.82254 1.15273 1.37445 1.19648 0.91659 0.85285 0.89324 1.21972 1.04849 0.93181 1.00316 1.19990 0.99491 0.93196 0.93870 1.18404 0.77694 0.86562 0.82721 1.90724 1.57115 1.15189 1.83011 1.48749 1.61431 1.11188 1.12137 1.22921 0.98973 0.79972 1.00363 1.22843 0.97994 1.00188 0.94070 1.19692 0.85317 0.88471 0.87068 1.86102 1.55006 1.42153 1.56073 1.21819 0.96512 1.18617 1.22592 0.91413 1.25801 0.98327 0.95760 0.97573 1.69790 1.22539 1.26102 1.36985 0.85478 0.79309 0.78484 0.77916 1.20517 1.20721 1.18928 1.22630 0.98161 0.97804 0.81638 1.22273 1.01765 1.02757 0.91624 1.22962 0.91185 0.87090 0.99351 1.67239 1.19648 1.12227 1.26146 0.93783 0.91228 0.92729 0.90947 0.87758 0.92013 0.93460 0.88917 0.81864 0.89835 0.87974 0.89634 0.88688 0.77496 0.92048 0.94361 0.94406 0.83143 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.81 71.98 0.71 -1.48 16 2 C -0.12 -1.53 5.64 30.60 0.17 -1.35 16 3 C 0.08 1.35 2.48 30.60 0.08 1.43 16 4 H 0.09 1.54 6.98 -2.39 -0.02 1.52 16 5 C -0.17 -2.49 9.53 71.98 0.69 -1.80 16 6 O -0.31 -7.03 9.30 -90.04 -0.84 -7.87 16 7 C 0.32 8.02 7.45 84.80 0.63 8.66 16 8 C -0.18 -5.06 8.17 22.75 0.19 -4.88 16 9 C -0.05 -1.72 5.81 -19.90 -0.12 -1.83 16 10 C 0.56 22.59 7.75 86.88 0.67 23.26 16 11 O -0.58 -27.67 16.90 -3.75 -0.06 -27.73 16 12 N -0.60 -24.89 3.32 -814.40 -2.71 -27.60 16 13 C 0.10 3.30 4.94 86.93 0.43 3.73 16 14 C -0.11 -4.27 6.24 32.06 0.20 -4.07 16 15 C 0.23 11.22 0.85 -10.35 -0.01 11.21 16 16 O -0.59 -29.05 13.07 -148.98 -1.95 -31.00 16 17 C -0.56 -28.96 8.13 25.60 0.21 -28.75 16 18 H 0.07 3.43 7.78 -2.91 -0.02 3.40 16 19 C 0.03 1.38 5.28 84.66 0.45 1.83 16 20 N -0.92 -49.47 10.96 21.45 0.24 -49.24 16 21 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 C 0.12 5.95 5.24 86.73 0.45 6.40 16 26 C -0.16 -4.15 9.67 22.63 0.22 -3.94 16 27 C 0.15 2.94 11.17 84.62 0.94 3.89 16 28 N -0.53 -11.89 8.62 -309.13 -2.66 -14.55 16 29 H 0.04 0.78 7.82 -2.39 -0.02 0.76 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.16 4.43 4.07 -2.91 -0.01 4.42 16 38 H 0.08 2.64 7.07 -2.39 -0.02 2.62 16 39 H 0.10 2.81 6.43 -2.39 -0.02 2.79 16 40 H 0.09 3.10 8.04 -2.39 -0.02 3.08 16 41 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.38 19.50 7.45 -74.05 -0.55 18.95 16 43 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.04 2.09 7.81 -2.39 -0.02 2.07 16 45 H 0.04 2.06 7.92 -2.39 -0.02 2.04 16 46 H 0.15 3.71 7.83 -2.91 -0.02 3.69 16 47 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -65.28 381.91 0.39 -64.89 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.44 Total: 36.87 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.91 Total: 12.30 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -5.14 Total: -91.39 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -2.85 Total: -66.60 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -65.28 0.39 -64.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.149 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds