Wall clock time and date at job start Tue Mar 31 2020 17:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47074 * 2 1 4 4 H 1.09000 * 109.47449 * 54.99793 * 3 2 1 5 5 C 1.50703 * 109.46775 * 174.99571 * 3 2 1 6 6 H 1.08001 * 119.99741 * 120.00144 * 5 3 2 7 7 C 1.37872 * 120.00346 * 299.99617 * 5 3 2 8 8 N 1.31516 * 119.99900 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00272 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46635 * 120.00111 * 9 7 5 12 12 H 1.48499 * 109.47273 * 239.99808 * 9 7 5 13 13 N 1.46498 * 109.46796 * 294.99306 * 3 2 1 14 14 C 1.34778 * 119.99878 * 85.00535 * 13 3 2 15 15 O 1.21522 * 119.99832 * 359.97438 * 14 13 3 16 16 C 1.48009 * 119.99880 * 179.97438 * 14 13 3 17 17 C 1.39863 * 120.45891 * 179.97438 * 16 14 13 18 18 C 1.38461 * 118.35968 * 180.02562 * 17 16 14 19 19 C 1.39331 * 119.18696 * 0.02562 * 18 17 16 20 20 C 1.48242 * 119.57746 * 179.97438 * 19 18 17 21 21 O 1.21404 * 120.00103 * 0.02562 * 20 19 18 22 22 O 1.34662 * 120.00471 * 180.02562 * 20 19 18 23 23 C 1.45197 * 117.00380 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47016 * 59.99947 * 23 22 20 25 25 C 1.52995 * 109.47379 * 180.02562 * 23 22 20 26 26 C 1.53010 * 109.47054 * 300.00290 * 23 22 20 27 27 N 1.32744 * 120.84924 * 0.02562 * 19 18 17 28 28 C 1.31401 * 121.80233 * 359.97438 * 27 19 18 29 29 H 1.09006 * 109.46736 * 60.00606 * 1 2 3 30 30 H 1.08994 * 109.47383 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47741 * 300.00776 * 1 2 3 32 32 H 1.08992 * 109.47319 * 239.99472 * 2 1 3 33 33 H 1.09006 * 109.46736 * 119.99394 * 2 1 3 34 34 H 0.96994 * 120.00367 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00156 * 264.99668 * 13 3 2 36 36 H 1.08000 * 120.82246 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.40653 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46841 * 60.00227 * 24 23 22 39 39 H 1.09005 * 109.46613 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.47097 * 299.99880 * 24 23 22 41 41 H 1.09008 * 109.47135 * 59.99796 * 25 23 22 42 42 H 1.09005 * 109.47452 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.47077 * 300.00140 * 25 23 22 44 44 H 1.09004 * 109.46929 * 59.99812 * 26 23 22 45 45 H 1.08996 * 109.47066 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.46640 * 299.99884 * 26 23 22 47 47 H 1.07994 * 119.63863 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8799 1.3814 10 1 6.5988 1.5450 0.1939 11 1 6.3998 1.6157 2.6094 12 1 6.4960 -0.5191 1.4631 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3411 2.6319 -0.4327 16 6 0.0440 3.3264 -2.6317 17 6 -1.2170 3.9173 -2.7620 18 6 -1.5378 4.5243 -3.9645 19 6 -0.6013 4.5255 -4.9961 20 6 -0.9359 5.1724 -6.2873 21 8 -2.0199 5.6970 -6.4405 22 8 -0.0374 5.1781 -7.2904 23 6 -0.4330 5.8301 -8.5260 24 6 -0.7482 7.3013 -8.2480 25 6 0.7082 5.7354 -9.5406 26 6 -1.6761 5.1402 -9.0914 27 7 0.5863 3.9540 -4.8380 28 6 0.9285 3.3679 -3.7128 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8290 -0.0617 2.9496 35 1 2.2721 2.1230 -1.9978 36 1 -1.9233 3.8999 -1.9453 37 1 -2.5021 4.9911 -4.1010 38 1 0.1374 7.7928 -7.8452 39 1 -1.0455 7.7906 -9.1756 40 1 -1.5614 7.3684 -7.5254 41 1 0.9324 4.6872 -9.7385 42 1 0.4111 6.2245 -10.4684 43 1 1.5941 6.2267 -9.1380 44 1 -2.4893 5.2073 -8.3687 45 1 -1.9733 5.6299 -10.0187 46 1 -1.4515 4.0921 -9.2894 47 1 1.9043 2.9141 -3.6222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593605959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:35 Heat of formation + Delta-G solvation = -91.815308 kcal Electronic energy + Delta-G solvation = -28472.405354 eV Core-core repulsion = 24427.396120 eV Total energy + Delta-G solvation = -4045.009234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28929 -40.32097 -38.74223 -37.21537 -35.25650 -34.37754 -32.81304 -32.69340 -31.82140 -30.66730 -27.72299 -27.71942 -27.29843 -25.82548 -23.81054 -23.22536 -22.53314 -20.74523 -20.05781 -19.56508 -18.39329 -17.75681 -17.18626 -16.42687 -16.32147 -16.02428 -15.39022 -15.22365 -14.89803 -14.72170 -14.62995 -14.32926 -13.93686 -13.77459 -13.57671 -13.18664 -12.92357 -12.77972 -12.65113 -12.51539 -12.26602 -12.21423 -12.15058 -11.78722 -11.61868 -11.57587 -11.32384 -11.03487 -10.91088 -10.67628 -10.50686 -10.39029 -10.28248 -10.12020 -9.98187 -9.71166 -9.42536 -9.26265 -9.12214 -8.57949 -7.99674 -6.19008 -4.28928 0.05951 0.99137 2.04481 2.25271 3.19929 3.20874 3.28901 3.31096 3.72011 3.84474 3.88333 4.30222 4.36393 4.43355 4.43989 4.57913 4.62516 4.68996 4.92965 5.11934 5.14689 5.16605 5.20502 5.34619 5.38388 5.39187 5.48581 5.49852 5.69403 5.77912 5.91487 5.92111 5.94173 6.16770 6.23112 6.32169 6.37698 6.57324 6.95695 7.09888 7.21892 7.29648 7.30111 7.52319 7.62729 7.65234 7.80119 8.08988 8.46430 8.65812 8.90385 9.38377 10.86348 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002348 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.567259 B =11924.547781 C =12919.261366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.695 5.695 14 C 0.542 3.458 15 O -0.535 6.535 16 C -0.138 4.138 17 C -0.031 4.031 18 C -0.112 4.112 19 C 0.094 3.906 20 C 0.530 3.470 21 O -0.495 6.495 22 O -0.324 6.324 23 C 0.113 3.887 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.184 4.184 27 N -0.437 5.437 28 C 0.126 3.874 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 9.267 -19.927 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.342 5.342 14 C 0.326 3.674 15 O -0.413 6.413 16 C -0.143 4.143 17 C -0.058 4.058 18 C -0.132 4.132 19 C -0.042 4.042 20 C 0.373 3.627 21 O -0.383 6.383 22 O -0.240 6.240 23 C 0.077 3.923 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.241 4.241 27 N -0.148 5.148 28 C -0.035 4.035 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.986 9.334 -19.864 23.356 hybrid contribution 0.696 -0.035 0.367 0.788 sum -7.289 9.299 -19.497 22.798 Atomic orbital electron populations 1.21850 0.98333 0.98247 1.01145 1.21951 0.92620 0.99579 1.02560 1.18904 0.94532 0.89288 0.80468 0.92943 1.21235 0.90454 1.39281 1.06469 0.91879 1.24879 0.98716 0.94683 0.95325 1.69893 1.35142 1.37437 1.09347 0.86388 0.84693 0.77825 0.78191 1.19657 1.20872 1.20837 1.46525 1.13954 1.54859 1.18897 1.17918 0.83449 0.79805 0.86247 1.90766 1.51367 1.59771 1.39434 1.21769 0.95989 0.99684 0.96873 1.21798 0.95466 0.91500 0.97007 1.22064 1.00651 0.98399 0.92092 1.20201 0.92020 0.99697 0.92304 1.20727 0.82012 0.76413 0.83538 1.90748 1.23543 1.42316 1.81695 1.86739 1.44099 1.70719 1.22396 1.22284 0.95924 0.92434 0.81650 1.22502 1.03541 0.94235 1.03796 1.21840 0.97315 1.03543 0.97007 1.22504 0.98128 1.00966 1.02476 1.67636 1.16373 1.06376 1.24386 1.23133 0.99491 0.94035 0.86844 0.94446 0.95672 0.93046 0.94832 0.88054 0.92519 0.77733 0.82313 0.82756 0.91804 0.90924 0.89847 0.91272 0.90322 0.91262 0.89846 0.90926 0.91816 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.39 2.24 -69.08 -0.15 6.23 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.46 8.73 -34.44 -0.30 -13.76 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.82 11.29 55.43 0.63 -23.19 16 9 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.69 -13.32 4.98 -55.83 -0.28 -13.59 16 14 C 0.54 9.98 6.35 -12.25 -0.08 9.90 16 15 O -0.53 -11.48 13.54 5.35 0.07 -11.41 16 16 C -0.14 -2.01 5.90 -104.72 -0.62 -2.63 16 17 C -0.03 -0.40 9.71 -38.89 -0.38 -0.78 16 18 C -0.11 -1.30 9.62 -39.09 -0.38 -1.68 16 19 C 0.09 1.23 6.75 -82.95 -0.56 0.67 16 20 C 0.53 6.71 7.26 34.84 0.25 6.96 16 21 O -0.50 -6.36 11.85 -19.19 -0.23 -6.59 16 22 O -0.32 -3.92 9.70 -40.39 -0.39 -4.31 16 23 C 0.11 1.04 1.13 -90.62 -0.10 0.94 16 24 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 25 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 26 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 27 N -0.44 -6.00 10.10 -9.49 -0.10 -6.10 16 28 C 0.13 1.67 10.71 -17.17 -0.18 1.49 16 29 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.39 6.35 6.60 -40.82 -0.27 6.08 16 36 H 0.16 1.90 7.73 -52.49 -0.41 1.50 16 37 H 0.15 1.49 7.63 -52.48 -0.40 1.09 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.85 5.88 -51.93 -0.31 0.54 16 41 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.85 5.88 -51.93 -0.31 0.54 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.17 1.93 6.41 -52.49 -0.34 1.59 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -29.57 382.04 -7.80 -37.37 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.77 Total: 7.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.47 Total: 0.11 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.25 Total: -42.88 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.55 Total: -22.31 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.57 -7.80 -37.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593605959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.441 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds