Wall clock time and date at job start Tue Mar 31 2020 17:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47074 * 2 1 4 4 H 1.09000 * 109.47449 * 54.99793 * 3 2 1 5 5 C 1.50703 * 109.46775 * 174.99571 * 3 2 1 6 6 H 1.08001 * 119.99741 * 120.00144 * 5 3 2 7 7 C 1.37872 * 120.00346 * 299.99617 * 5 3 2 8 8 N 1.31516 * 119.99900 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00272 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46635 * 120.00111 * 9 7 5 12 12 H 1.48499 * 109.47273 * 239.99808 * 9 7 5 13 13 N 1.46498 * 109.46796 * 294.99306 * 3 2 1 14 14 C 1.34778 * 119.99878 * 85.00535 * 13 3 2 15 15 O 1.21522 * 119.99832 * 359.97438 * 14 13 3 16 16 C 1.48009 * 119.99880 * 179.97438 * 14 13 3 17 17 C 1.39863 * 120.45891 * 179.97438 * 16 14 13 18 18 C 1.38461 * 118.35968 * 180.02562 * 17 16 14 19 19 C 1.39331 * 119.18696 * 0.02562 * 18 17 16 20 20 C 1.48242 * 119.57746 * 179.97438 * 19 18 17 21 21 O 1.21404 * 120.00103 * 0.02562 * 20 19 18 22 22 O 1.34662 * 120.00471 * 180.02562 * 20 19 18 23 23 C 1.45197 * 117.00380 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47016 * 59.99947 * 23 22 20 25 25 C 1.52995 * 109.47379 * 180.02562 * 23 22 20 26 26 C 1.53010 * 109.47054 * 300.00290 * 23 22 20 27 27 N 1.32744 * 120.84924 * 0.02562 * 19 18 17 28 28 C 1.31401 * 121.80233 * 359.97438 * 27 19 18 29 29 H 1.09006 * 109.46736 * 60.00606 * 1 2 3 30 30 H 1.08994 * 109.47383 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47741 * 300.00776 * 1 2 3 32 32 H 1.08992 * 109.47319 * 239.99472 * 2 1 3 33 33 H 1.09006 * 109.46736 * 119.99394 * 2 1 3 34 34 H 0.96994 * 120.00367 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00156 * 264.99668 * 13 3 2 36 36 H 1.08000 * 120.82246 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.40653 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46841 * 60.00227 * 24 23 22 39 39 H 1.09005 * 109.46613 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.47097 * 299.99880 * 24 23 22 41 41 H 1.09008 * 109.47135 * 59.99796 * 25 23 22 42 42 H 1.09005 * 109.47452 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.47077 * 300.00140 * 25 23 22 44 44 H 1.09004 * 109.46929 * 59.99812 * 26 23 22 45 45 H 1.08996 * 109.47066 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.46640 * 299.99884 * 26 23 22 47 47 H 1.07994 * 119.63863 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8799 1.3814 10 1 6.5988 1.5450 0.1939 11 1 6.3998 1.6157 2.6094 12 1 6.4960 -0.5191 1.4631 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3411 2.6319 -0.4327 16 6 0.0440 3.3264 -2.6317 17 6 -1.2170 3.9173 -2.7620 18 6 -1.5378 4.5243 -3.9645 19 6 -0.6013 4.5255 -4.9961 20 6 -0.9359 5.1724 -6.2873 21 8 -2.0199 5.6970 -6.4405 22 8 -0.0374 5.1781 -7.2904 23 6 -0.4330 5.8301 -8.5260 24 6 -0.7482 7.3013 -8.2480 25 6 0.7082 5.7354 -9.5406 26 6 -1.6761 5.1402 -9.0914 27 7 0.5863 3.9540 -4.8380 28 6 0.9285 3.3679 -3.7128 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8290 -0.0617 2.9496 35 1 2.2721 2.1230 -1.9978 36 1 -1.9233 3.8999 -1.9453 37 1 -2.5021 4.9911 -4.1010 38 1 0.1374 7.7928 -7.8452 39 1 -1.0455 7.7906 -9.1756 40 1 -1.5614 7.3684 -7.5254 41 1 0.9324 4.6872 -9.7385 42 1 0.4111 6.2245 -10.4684 43 1 1.5941 6.2267 -9.1380 44 1 -2.4893 5.2073 -8.3687 45 1 -1.9733 5.6299 -10.0187 46 1 -1.4515 4.0921 -9.2894 47 1 1.9043 2.9141 -3.6222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593605959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:34 Heat of formation + Delta-G solvation = -108.731345 kcal Electronic energy + Delta-G solvation = -28473.138888 eV Core-core repulsion = 24427.396120 eV Total energy + Delta-G solvation = -4045.742768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.26041 -41.44092 -40.13829 -38.10180 -37.01084 -35.16036 -34.47637 -33.79975 -33.31053 -32.16098 -29.07066 -28.37187 -28.29675 -27.05605 -25.05091 -24.76983 -23.65925 -22.20830 -21.27515 -20.90950 -19.64569 -19.00495 -18.17677 -17.76431 -17.44859 -17.22935 -16.91522 -16.37987 -16.32497 -16.03091 -15.64606 -15.46244 -15.01106 -14.80733 -14.60819 -14.58623 -14.33724 -13.93557 -13.78994 -13.48035 -13.38181 -13.15927 -13.12425 -12.94380 -12.87684 -12.87485 -12.69959 -12.50989 -12.31991 -12.14706 -12.05924 -11.58996 -11.42765 -11.39022 -11.17499 -11.16271 -11.03733 -10.65241 -10.52191 -10.51160 -9.70160 -8.15069 -6.31703 -1.01920 -0.01777 1.01157 1.39093 1.45795 1.48152 1.58851 1.94518 2.26252 2.49759 2.68823 2.85127 3.15335 3.50940 3.55370 3.69300 3.71583 3.78863 3.84745 3.88616 3.94775 4.44673 4.51437 4.53142 4.58805 4.61700 4.65949 4.76452 4.76883 4.82635 4.87202 4.88005 4.91115 5.08277 5.11729 5.20495 5.25566 5.26198 5.28166 5.39239 5.43754 5.51839 5.61097 5.79561 5.89739 6.17333 6.31301 6.68362 6.74914 6.85561 7.30217 7.45595 8.90381 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002348 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.567259 B =11924.547781 C =12919.261366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.693 5.693 14 C 0.546 3.454 15 O -0.570 6.570 16 C -0.151 4.151 17 C -0.024 4.024 18 C -0.101 4.101 19 C 0.090 3.910 20 C 0.529 3.471 21 O -0.499 6.499 22 O -0.336 6.336 23 C 0.101 3.899 24 C -0.180 4.180 25 C -0.137 4.137 26 C -0.180 4.180 27 N -0.448 5.448 28 C 0.135 3.865 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 10.024 -22.572 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.342 5.342 14 C 0.332 3.668 15 O -0.451 6.451 16 C -0.156 4.156 17 C -0.050 4.050 18 C -0.121 4.121 19 C -0.046 4.046 20 C 0.372 3.628 21 O -0.388 6.388 22 O -0.252 6.252 23 C 0.066 3.934 24 C -0.237 4.237 25 C -0.194 4.194 26 C -0.237 4.237 27 N -0.159 5.159 28 C -0.026 4.026 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.184 0.816 37 H 0.195 0.805 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.604 10.107 -22.563 25.866 hybrid contribution 0.504 -0.196 1.103 1.229 sum -7.099 9.911 -21.459 24.681 Atomic orbital electron populations 1.21695 0.96946 0.99274 1.00331 1.21804 0.93785 0.98989 1.01562 1.18470 0.93849 0.89288 0.80927 0.97674 1.21590 0.91279 1.38858 1.06711 0.90791 1.25713 1.03027 0.94443 0.95109 1.70039 1.36902 1.38341 1.09889 0.85368 0.79481 0.77736 0.78187 1.18373 1.21240 1.20620 1.46233 1.14889 1.55025 1.18004 1.18341 0.82498 0.78920 0.87074 1.90749 1.52247 1.60985 1.41118 1.21400 0.97378 1.01396 0.95469 1.21924 0.94827 0.90657 0.97608 1.22219 1.01240 0.97602 0.91000 1.20503 0.92042 0.99151 0.92901 1.20668 0.82071 0.76396 0.83657 1.90752 1.23690 1.42480 1.81834 1.86728 1.44262 1.70997 1.23220 1.22671 0.97153 0.92635 0.80976 1.22476 1.02745 0.94040 1.04476 1.21878 0.96428 1.03771 0.97290 1.22477 0.97126 1.01178 1.02940 1.67689 1.16897 1.06955 1.24374 1.23313 0.99782 0.93386 0.86154 0.93800 0.93618 0.95238 0.93849 0.90828 0.92619 0.75940 0.81621 0.80523 0.91978 0.88586 0.91702 0.91455 0.87792 0.91491 0.91697 0.88594 0.91937 0.79474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.75 5.45 30.59 0.17 -5.59 16 3 C 0.28 13.46 2.24 44.25 0.10 13.56 16 4 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 5 C -0.55 -27.52 8.73 25.60 0.22 -27.30 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -50.61 11.29 21.45 0.24 -50.37 16 9 Si 0.97 40.88 29.54 68.60 2.03 42.91 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 13 N -0.69 -26.53 4.98 -448.83 -2.23 -28.77 16 14 C 0.55 20.10 6.35 86.83 0.55 20.65 16 15 O -0.57 -25.00 13.54 -3.79 -0.05 -25.05 16 16 C -0.15 -4.27 5.90 -19.93 -0.12 -4.39 16 17 C -0.02 -0.58 9.71 22.72 0.22 -0.36 16 18 C -0.10 -2.17 9.62 22.59 0.22 -1.95 16 19 C 0.09 2.21 6.75 41.93 0.28 2.50 16 20 C 0.53 12.73 7.26 70.48 0.51 13.24 16 21 O -0.50 -12.22 11.85 20.15 0.24 -11.98 16 22 O -0.34 -7.71 9.70 -55.71 -0.54 -8.25 16 23 C 0.10 1.67 1.13 -10.79 -0.01 1.66 16 24 C -0.18 -2.74 8.37 71.98 0.60 -2.13 16 25 C -0.14 -1.59 8.85 71.98 0.64 -0.95 16 26 C -0.18 -2.71 8.37 71.99 0.60 -2.11 16 27 N -0.45 -11.65 10.10 -183.95 -1.86 -13.50 16 28 C 0.13 3.38 10.71 85.12 0.91 4.29 16 29 H 0.04 1.79 5.64 -2.38 -0.01 1.78 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 3.90 5.95 -2.38 -0.01 3.89 16 34 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.40 12.82 6.60 -92.71 -0.61 12.21 16 36 H 0.17 3.80 7.73 -2.91 -0.02 3.78 16 37 H 0.18 2.99 7.63 -2.91 -0.02 2.97 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.06 1.24 5.88 -2.39 -0.01 1.23 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 44 H 0.06 1.24 5.88 -2.38 -0.01 1.22 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.19 3.90 6.41 -2.91 -0.02 3.88 16 Total: -1.00 -64.81 382.04 4.17 -60.64 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.39 Total: 26.65 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.96 Total: 7.72 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.85 Total: -92.64 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.35 Total: -45.28 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -64.81 4.17 -60.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593605959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.089 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds