Wall clock time and date at job start Tue Mar 31 2020 17:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47220 * 2 1 4 4 H 1.09001 * 109.67502 * 54.26225 * 3 2 1 5 5 C 1.53296 * 109.71031 * 293.73285 * 3 2 1 6 6 O 1.42970 * 109.21864 * 187.95693 * 5 3 2 7 7 C 1.42961 * 114.16841 * 62.57675 * 6 5 3 8 8 C 1.52992 * 109.51047 * 177.49428 * 7 6 5 9 9 C 1.52999 * 109.51233 * 57.34474 * 7 6 5 10 10 C 1.53294 * 109.22365 * 297.41933 * 7 6 5 11 11 N 1.47151 * 109.68079 * 174.78372 * 3 2 1 12 12 S 1.65592 * 120.98654 * 350.27176 * 11 3 2 13 13 O 1.42099 * 106.39854 * 28.13300 * 12 11 3 14 14 O 1.42100 * 106.40544 * 161.04654 * 12 11 3 15 15 N 1.65598 * 107.22017 * 274.59318 * 12 11 3 16 16 C 1.46492 * 120.00030 * 281.43097 * 15 12 11 17 17 C 1.53008 * 109.47037 * 97.00805 * 16 15 12 18 18 C 1.46498 * 119.99867 * 101.43730 * 15 12 11 19 19 C 1.50706 * 109.47356 * 96.68147 * 18 15 12 20 20 H 1.07994 * 119.99976 * 359.97438 * 19 18 15 21 21 C 1.37874 * 119.99823 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00595 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99848 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47016 * 59.99840 * 23 21 19 25 25 H 1.48498 * 109.47115 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46906 * 300.00125 * 23 21 19 27 27 H 1.08994 * 109.47311 * 305.45378 * 1 2 3 28 28 H 1.09003 * 109.47246 * 65.45486 * 1 2 3 29 29 H 1.08997 * 109.47145 * 185.45313 * 1 2 3 30 30 H 1.08997 * 109.47468 * 240.00298 * 2 1 3 31 31 H 1.08996 * 109.47599 * 119.99600 * 2 1 3 32 32 H 1.09003 * 109.50900 * 307.87048 * 5 3 2 33 33 H 1.08994 * 109.51801 * 68.02945 * 5 3 2 34 34 H 1.09001 * 109.47540 * 179.74383 * 8 7 6 35 35 H 1.09003 * 109.47662 * 299.74546 * 8 7 6 36 36 H 1.09007 * 109.47351 * 59.74931 * 8 7 6 37 37 H 1.09004 * 109.47027 * 300.25230 * 9 7 6 38 38 H 1.08997 * 109.47337 * 60.25338 * 9 7 6 39 39 H 1.09001 * 109.47092 * 180.25138 * 9 7 6 40 40 H 1.09000 * 109.68309 * 292.57897 * 10 7 6 41 41 H 1.09001 * 109.71095 * 172.04489 * 10 7 6 42 42 H 1.09002 * 109.47821 * 217.00566 * 16 15 12 43 43 H 1.09007 * 109.47512 * 337.01050 * 16 15 12 44 44 H 1.08994 * 109.46837 * 65.11955 * 17 16 15 45 45 H 1.08997 * 109.47385 * 185.12845 * 17 16 15 46 46 H 1.09009 * 109.46896 * 305.12585 * 17 16 15 47 47 H 1.09001 * 109.47136 * 216.68062 * 18 15 12 48 48 H 1.08997 * 109.47444 * 336.67715 * 18 15 12 49 49 H 0.96999 * 120.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9884 0.8331 5 6 1.6648 2.1236 -1.3211 6 8 2.3015 3.4019 -1.3891 7 6 3.7300 3.3449 -1.3896 8 6 4.2977 4.7589 -1.5276 9 6 4.2067 2.4850 -2.5619 10 6 4.2109 2.7264 -0.0720 11 7 3.5061 1.4498 0.1260 12 16 4.3382 0.0628 0.4807 13 8 3.5600 -1.0126 -0.0264 14 8 5.6867 0.2946 0.0972 15 7 4.3417 -0.0989 2.1287 16 6 5.2692 0.6929 2.9404 17 6 4.5494 1.9336 3.4731 18 6 3.4174 -1.0339 2.7750 19 6 4.1259 -2.3370 3.0418 20 1 5.1610 -2.4569 2.7581 21 6 3.4525 -3.3761 3.6483 22 7 2.1918 -3.2304 3.9935 23 14 4.3305 -4.9916 3.9785 24 1 5.4939 -4.7497 4.8690 25 1 3.3935 -5.9393 4.6336 26 1 4.8018 -5.5702 2.6946 27 1 -0.3633 0.5961 0.8371 28 1 -0.3634 0.4269 -0.9348 29 1 -0.3633 -1.0230 0.0977 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.9970 1.5066 -2.1560 33 1 0.5836 2.2524 -1.3702 34 1 5.3869 4.7152 -1.5234 35 1 3.9554 5.1981 -2.4647 36 1 3.9555 5.3709 -0.6931 37 1 3.7997 1.4786 -2.4634 38 1 3.8645 2.9254 -3.4983 39 1 5.2957 2.4384 -2.5590 40 1 3.9867 3.4015 0.7539 41 1 5.2853 2.5489 -0.1198 42 1 5.6242 0.0915 3.7774 43 1 6.1172 0.9997 2.3280 44 1 3.7581 1.6285 4.1577 45 1 5.2614 2.5684 4.0003 46 1 4.1158 2.4876 2.6404 47 1 3.0707 -0.6093 3.7171 48 1 2.5639 -1.2117 2.1207 49 1 1.7181 -3.9616 4.4198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593627791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:20 Heat of formation + Delta-G solvation = -108.595424 kcal Electronic energy + Delta-G solvation = -30726.420476 eV Core-core repulsion = 26816.127553 eV Total energy + Delta-G solvation = -3910.292923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01298 -37.18409 -36.13605 -35.55324 -35.10615 -34.08147 -32.69610 -31.84693 -29.98855 -28.08462 -27.23295 -26.64680 -25.83406 -23.74145 -23.14859 -21.67188 -21.37854 -19.73696 -18.31852 -17.24006 -16.89795 -16.66985 -16.31458 -15.74221 -15.35606 -14.98443 -14.87833 -14.51726 -14.35092 -13.83160 -13.80712 -13.34957 -13.15811 -12.93631 -12.79497 -12.50437 -12.43688 -12.18861 -12.10163 -12.00000 -11.96815 -11.81925 -11.65691 -11.58015 -11.40504 -11.26120 -11.03420 -11.02470 -10.94122 -10.69820 -10.56241 -10.44697 -10.17099 -10.13981 -9.92293 -9.79616 -9.53675 -8.61762 -8.43930 -8.07173 -6.08453 -4.12757 1.14039 3.31663 3.35444 3.36457 3.40219 3.66494 4.03441 4.42291 4.56451 4.71942 4.77373 4.87256 5.01574 5.02409 5.21810 5.25557 5.35107 5.36927 5.47105 5.49930 5.55436 5.57966 5.63536 5.67793 5.68225 5.71582 5.72197 5.81412 5.89174 5.92429 5.98914 6.02112 6.16337 6.24781 6.32500 6.38368 6.48585 6.57954 6.58741 6.78349 6.82752 7.18422 7.29442 7.46372 7.62642 7.88856 8.19044 8.89626 9.52428 10.99721 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.004681 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.698383 B = 5979.688386 C = 6563.776987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.158 4.158 3 C 0.127 3.873 4 H 0.078 0.922 5 C 0.053 3.947 6 O -0.372 6.372 7 C 0.102 3.898 8 C -0.136 4.136 9 C -0.180 4.180 10 C 0.097 3.903 11 N -1.009 6.009 12 S 2.775 3.225 13 O -0.960 6.960 14 O -0.997 6.997 15 N -0.990 5.990 16 C 0.119 3.881 17 C -0.171 4.171 18 C 0.251 3.749 19 C -0.533 4.533 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.893 5.893 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.034 0.966 48 H 0.050 0.950 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 15.236 -8.334 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.020 3.980 4 H 0.096 0.904 5 C -0.025 4.025 6 O -0.291 6.291 7 C 0.061 3.939 8 C -0.194 4.194 9 C -0.237 4.237 10 C -0.029 4.029 11 N -0.848 5.848 12 S 2.786 3.214 13 O -0.944 6.944 14 O -0.981 6.981 15 N -0.832 5.832 16 C -0.008 4.008 17 C -0.231 4.231 18 C 0.130 3.870 19 C -0.572 4.572 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.532 5.532 23 Si 0.722 3.278 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.303 14.693 -8.868 17.164 hybrid contribution 0.322 -0.976 0.676 1.230 sum 0.624 13.716 -8.192 15.989 Atomic orbital electron populations 1.21768 0.95423 1.02440 1.00848 1.22670 0.96289 0.93079 1.07545 1.21731 0.79253 0.98484 0.98496 0.90372 1.23058 0.97857 0.85105 0.96461 1.87946 1.18030 1.28572 1.94525 1.21771 0.81832 0.96208 0.94070 1.21724 1.00680 0.93915 1.03050 1.22411 1.02408 1.00671 0.98259 1.22082 0.97709 0.85653 0.97471 1.58603 1.15414 1.24527 1.86231 1.02234 0.72690 0.72791 0.73648 1.93709 1.69461 1.52686 1.78506 1.93492 1.35623 1.86177 1.82822 1.57744 1.48966 1.52048 1.24393 1.21103 0.91144 0.91803 0.96710 1.22276 1.01351 0.97991 1.01437 1.19212 0.87792 0.86236 0.93780 1.21454 0.98253 0.97768 1.39762 0.92317 1.24908 0.94856 0.98680 0.95334 1.69905 1.09157 1.32903 1.41211 0.86608 0.79391 0.83139 0.78624 1.20172 1.21125 1.20044 0.92824 0.93321 0.91842 0.88517 0.88258 0.92303 0.87943 0.90818 0.91570 0.91598 0.92030 0.91670 0.91048 0.90907 0.88305 0.89751 0.91196 0.91943 0.92356 0.93048 0.94849 0.93214 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.57 37.16 0.36 -1.64 16 2 C -0.16 -2.60 3.73 -26.73 -0.10 -2.70 16 3 C 0.13 1.83 3.15 -67.42 -0.21 1.61 16 4 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.05 0.66 5.48 37.31 0.20 0.87 16 6 O -0.37 -4.77 10.23 -35.23 -0.36 -5.13 16 7 C 0.10 1.20 1.11 -90.47 -0.10 1.10 16 8 C -0.14 -1.22 8.85 37.15 0.33 -0.89 16 9 C -0.18 -2.13 8.10 37.16 0.30 -1.83 16 10 C 0.10 1.26 4.97 -3.53 -0.02 1.24 16 11 N -1.01 -15.63 2.92 -106.02 -0.31 -15.94 16 12 S 2.78 55.01 5.70 -107.50 -0.61 54.40 16 13 O -0.96 -21.66 11.97 -57.17 -0.68 -22.34 16 14 O -1.00 -20.94 15.49 -57.17 -0.89 -21.83 16 15 N -0.99 -20.35 2.83 -115.66 -0.33 -20.67 16 16 C 0.12 2.06 6.40 -4.04 -0.03 2.04 16 17 C -0.17 -2.42 10.22 37.16 0.38 -2.04 16 18 C 0.25 6.16 5.09 -5.19 -0.03 6.13 16 19 C -0.53 -14.73 9.37 -34.44 -0.32 -15.05 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 23 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.54 7.09 -51.93 -0.37 0.17 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.71 6.58 -51.93 -0.34 1.36 16 31 H 0.10 1.99 3.50 -51.93 -0.18 1.81 16 32 H 0.06 0.74 6.23 -51.93 -0.32 0.42 16 33 H 0.10 1.08 7.17 -51.93 -0.37 0.71 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.83 6.11 -51.93 -0.32 0.51 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.85 7.17 -51.93 -0.37 0.47 16 41 H 0.10 1.29 6.85 -51.93 -0.36 0.94 16 42 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 43 H 0.07 1.14 7.10 -51.92 -0.37 0.77 16 44 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.68 6.70 -51.92 -0.35 0.33 16 47 H 0.03 0.84 8.05 -51.93 -0.42 0.42 16 48 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 49 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -31.60 377.71 -9.31 -40.91 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.20 Total: 2.61 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 0.67 Total: -9.45 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.10 Total: -61.43 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -1.93 Total: -49.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.61 Total: 54.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.60 -9.31 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593627791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.685 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds