Wall clock time and date at job start Tue Mar 31 2020 17:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47220 * 2 1 4 4 H 1.09001 * 109.67502 * 54.26225 * 3 2 1 5 5 C 1.53296 * 109.71031 * 293.73285 * 3 2 1 6 6 O 1.42970 * 109.21864 * 187.95693 * 5 3 2 7 7 C 1.42961 * 114.16841 * 62.57675 * 6 5 3 8 8 C 1.52992 * 109.51047 * 177.49428 * 7 6 5 9 9 C 1.52999 * 109.51233 * 57.34474 * 7 6 5 10 10 C 1.53294 * 109.22365 * 297.41933 * 7 6 5 11 11 N 1.47151 * 109.68079 * 174.78372 * 3 2 1 12 12 S 1.65592 * 120.98654 * 350.27176 * 11 3 2 13 13 O 1.42099 * 106.39854 * 28.13300 * 12 11 3 14 14 O 1.42100 * 106.40544 * 161.04654 * 12 11 3 15 15 N 1.65598 * 107.22017 * 274.59318 * 12 11 3 16 16 C 1.46492 * 120.00030 * 281.43097 * 15 12 11 17 17 C 1.53008 * 109.47037 * 97.00805 * 16 15 12 18 18 C 1.46498 * 119.99867 * 101.43730 * 15 12 11 19 19 C 1.50706 * 109.47356 * 96.68147 * 18 15 12 20 20 H 1.07994 * 119.99976 * 359.97438 * 19 18 15 21 21 C 1.37874 * 119.99823 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00595 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99848 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47016 * 59.99840 * 23 21 19 25 25 H 1.48498 * 109.47115 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46906 * 300.00125 * 23 21 19 27 27 H 1.08994 * 109.47311 * 305.45378 * 1 2 3 28 28 H 1.09003 * 109.47246 * 65.45486 * 1 2 3 29 29 H 1.08997 * 109.47145 * 185.45313 * 1 2 3 30 30 H 1.08997 * 109.47468 * 240.00298 * 2 1 3 31 31 H 1.08996 * 109.47599 * 119.99600 * 2 1 3 32 32 H 1.09003 * 109.50900 * 307.87048 * 5 3 2 33 33 H 1.08994 * 109.51801 * 68.02945 * 5 3 2 34 34 H 1.09001 * 109.47540 * 179.74383 * 8 7 6 35 35 H 1.09003 * 109.47662 * 299.74546 * 8 7 6 36 36 H 1.09007 * 109.47351 * 59.74931 * 8 7 6 37 37 H 1.09004 * 109.47027 * 300.25230 * 9 7 6 38 38 H 1.08997 * 109.47337 * 60.25338 * 9 7 6 39 39 H 1.09001 * 109.47092 * 180.25138 * 9 7 6 40 40 H 1.09000 * 109.68309 * 292.57897 * 10 7 6 41 41 H 1.09001 * 109.71095 * 172.04489 * 10 7 6 42 42 H 1.09002 * 109.47821 * 217.00566 * 16 15 12 43 43 H 1.09007 * 109.47512 * 337.01050 * 16 15 12 44 44 H 1.08994 * 109.46837 * 65.11955 * 17 16 15 45 45 H 1.08997 * 109.47385 * 185.12845 * 17 16 15 46 46 H 1.09009 * 109.46896 * 305.12585 * 17 16 15 47 47 H 1.09001 * 109.47136 * 216.68062 * 18 15 12 48 48 H 1.08997 * 109.47444 * 336.67715 * 18 15 12 49 49 H 0.96999 * 120.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9884 0.8331 5 6 1.6648 2.1236 -1.3211 6 8 2.3015 3.4019 -1.3891 7 6 3.7300 3.3449 -1.3896 8 6 4.2977 4.7589 -1.5276 9 6 4.2067 2.4850 -2.5619 10 6 4.2109 2.7264 -0.0720 11 7 3.5061 1.4498 0.1260 12 16 4.3382 0.0628 0.4807 13 8 3.5600 -1.0126 -0.0264 14 8 5.6867 0.2946 0.0972 15 7 4.3417 -0.0989 2.1287 16 6 5.2692 0.6929 2.9404 17 6 4.5494 1.9336 3.4731 18 6 3.4174 -1.0339 2.7750 19 6 4.1259 -2.3370 3.0418 20 1 5.1610 -2.4569 2.7581 21 6 3.4525 -3.3761 3.6483 22 7 2.1918 -3.2304 3.9935 23 14 4.3305 -4.9916 3.9785 24 1 5.4939 -4.7497 4.8690 25 1 3.3935 -5.9393 4.6336 26 1 4.8018 -5.5702 2.6946 27 1 -0.3633 0.5961 0.8371 28 1 -0.3634 0.4269 -0.9348 29 1 -0.3633 -1.0230 0.0977 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.9970 1.5066 -2.1560 33 1 0.5836 2.2524 -1.3702 34 1 5.3869 4.7152 -1.5234 35 1 3.9554 5.1981 -2.4647 36 1 3.9555 5.3709 -0.6931 37 1 3.7997 1.4786 -2.4634 38 1 3.8645 2.9254 -3.4983 39 1 5.2957 2.4384 -2.5590 40 1 3.9867 3.4015 0.7539 41 1 5.2853 2.5489 -0.1198 42 1 5.6242 0.0915 3.7774 43 1 6.1172 0.9997 2.3280 44 1 3.7581 1.6285 4.1577 45 1 5.2614 2.5684 4.0003 46 1 4.1158 2.4876 2.6404 47 1 3.0707 -0.6093 3.7171 48 1 2.5639 -1.2117 2.1207 49 1 1.7181 -3.9616 4.4198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593627791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:19 Heat of formation + Delta-G solvation = -129.887091 kcal Electronic energy + Delta-G solvation = -30727.343752 eV Core-core repulsion = 26816.127553 eV Total energy + Delta-G solvation = -3911.216199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04664 -38.74503 -37.74162 -36.99775 -36.54992 -35.12905 -34.72468 -32.95057 -31.53380 -29.09226 -28.53543 -28.09322 -26.92742 -25.11280 -24.66924 -23.23647 -22.58723 -20.78635 -19.80936 -18.78654 -18.56191 -18.04964 -17.87230 -17.07603 -16.73061 -16.30201 -16.10879 -15.93071 -15.62770 -15.32500 -14.91897 -14.73447 -14.68662 -14.34752 -13.94932 -13.82301 -13.65324 -13.53717 -13.40486 -13.25911 -13.15336 -13.05854 -12.98581 -12.85557 -12.78461 -12.70286 -12.61704 -12.29244 -12.24297 -12.19218 -12.11791 -11.84899 -11.81947 -11.65508 -11.38396 -11.13654 -10.89880 -10.55019 -9.86115 -9.69451 -8.21164 -6.33120 -0.39985 1.37066 1.39907 1.47135 1.94718 2.37196 2.53497 2.73905 3.09201 3.31778 3.51870 3.67212 3.86943 3.90487 3.97934 4.02472 4.12600 4.28035 4.39313 4.41579 4.44276 4.48655 4.57994 4.64888 4.65986 4.69478 4.77379 4.80506 4.84679 4.92189 4.98118 5.01371 5.08069 5.09330 5.14495 5.22561 5.26534 5.31070 5.39034 5.42025 5.45268 5.57986 5.60855 5.77827 5.98092 6.11273 6.22488 6.75030 7.35301 8.85721 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.004681 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.698383 B = 5979.688386 C = 6563.776987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 C 0.128 3.872 4 H 0.090 0.910 5 C 0.057 3.943 6 O -0.373 6.373 7 C 0.100 3.900 8 C -0.132 4.132 9 C -0.183 4.183 10 C 0.088 3.912 11 N -1.001 6.001 12 S 2.784 3.216 13 O -0.995 6.995 14 O -1.013 7.013 15 N -0.998 5.998 16 C 0.110 3.890 17 C -0.161 4.161 18 C 0.268 3.732 19 C -0.554 4.554 20 H 0.048 0.952 21 C 0.018 3.982 22 N -0.919 5.919 23 Si 0.952 3.048 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.278 1.278 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.022 0.978 48 H 0.035 0.965 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 17.424 -8.787 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.196 4.196 3 C 0.022 3.978 4 H 0.108 0.892 5 C -0.021 4.021 6 O -0.292 6.292 7 C 0.059 3.941 8 C -0.190 4.190 9 C -0.240 4.240 10 C -0.037 4.037 11 N -0.842 5.842 12 S 2.796 3.204 13 O -0.979 6.979 14 O -0.997 6.997 15 N -0.838 5.838 16 C -0.016 4.016 17 C -0.220 4.220 18 C 0.145 3.855 19 C -0.593 4.593 20 H 0.066 0.934 21 C -0.183 4.183 22 N -0.558 5.558 23 Si 0.776 3.224 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.204 1.204 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.053 0.947 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.384 16.894 -9.309 19.293 hybrid contribution 0.327 -1.604 0.764 1.806 sum 0.711 15.291 -8.545 17.531 Atomic orbital electron populations 1.21740 0.93178 1.02115 1.02978 1.22508 0.98333 0.94036 1.04722 1.21843 0.78238 0.97300 1.00384 0.89239 1.23080 0.99294 0.84937 0.94752 1.87959 1.18542 1.28333 1.94331 1.21944 0.81471 0.97782 0.92920 1.21746 1.01503 0.91847 1.03858 1.22452 1.02609 0.99641 0.99308 1.22420 0.97539 0.84448 0.99257 1.58238 1.15952 1.24321 1.85661 1.01753 0.72259 0.73161 0.73241 1.93680 1.70043 1.55066 1.79080 1.93457 1.36739 1.86587 1.82932 1.57677 1.48973 1.52282 1.24872 1.21341 0.91444 0.92586 0.96228 1.22185 1.01374 0.96793 1.01637 1.18751 0.87821 0.85921 0.93028 1.21791 0.98052 0.99543 1.39952 0.93381 1.25675 0.95600 1.01840 0.95145 1.69994 1.10211 1.33918 1.41690 0.85714 0.78830 0.79373 0.78447 1.18990 1.19977 1.20351 0.91747 0.90221 0.93297 0.90365 0.92079 0.92659 0.85416 0.89367 0.90713 0.90821 0.94239 0.90089 0.90719 0.88914 0.88437 0.91130 0.90044 0.93325 0.89195 0.91964 0.96045 0.94710 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.57 71.98 0.69 -3.10 16 2 C -0.16 -5.30 3.73 30.60 0.11 -5.19 16 3 C 0.13 3.57 3.15 44.97 0.14 3.71 16 4 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 5 C 0.06 1.31 5.48 72.08 0.40 1.71 16 6 O -0.37 -8.45 10.23 -148.98 -1.52 -9.98 16 7 C 0.10 2.09 1.11 -10.70 -0.01 2.08 16 8 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 9 C -0.18 -4.03 8.10 71.98 0.58 -3.44 16 10 C 0.09 2.12 4.97 86.35 0.43 2.55 16 11 N -1.00 -30.37 2.92 -489.35 -1.43 -31.80 16 12 S 2.78 112.86 5.70 -56.49 -0.32 112.54 16 13 O -0.99 -47.10 11.97 -128.00 -1.53 -48.63 16 14 O -1.01 -42.98 15.49 -128.00 -1.98 -44.96 16 15 N -1.00 -42.08 2.83 -519.84 -1.47 -43.56 16 16 C 0.11 3.80 6.40 86.38 0.55 4.35 16 17 C -0.16 -4.33 10.22 71.98 0.74 -3.59 16 18 C 0.27 13.69 5.09 85.64 0.44 14.12 16 19 C -0.55 -31.63 9.37 25.60 0.24 -31.39 16 20 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 21 C 0.02 0.99 5.46 84.65 0.46 1.46 16 22 N -0.92 -53.70 13.29 21.45 0.28 -53.42 16 23 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.60 7.09 -2.39 -0.02 1.59 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 2.89 6.58 -2.39 -0.02 2.87 16 31 H 0.06 2.57 3.50 -2.39 -0.01 2.57 16 32 H 0.06 1.32 6.23 -2.39 -0.01 1.31 16 33 H 0.13 2.27 7.17 -2.39 -0.02 2.25 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.04 1.04 6.11 -2.38 -0.01 1.02 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.86 7.17 -2.39 -0.02 1.85 16 41 H 0.10 2.38 6.85 -2.39 -0.02 2.36 16 42 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 43 H 0.08 2.61 7.10 -2.38 -0.02 2.59 16 44 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 45 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 1.52 6.70 -2.38 -0.02 1.50 16 47 H 0.02 1.13 8.05 -2.39 -0.02 1.11 16 48 H 0.04 1.91 4.73 -2.39 -0.01 1.90 16 49 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -70.05 377.71 0.39 -69.66 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.93 Total: 21.38 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.41 Total: -18.02 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -2.61 Total: -128.77 kcal Atomic # 8 Polarization: -98.53 SS G_CDS: -5.04 Total: -103.57 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 112.86 SS G_CDS: -0.32 Total: 112.54 kcal Total: -70.05 0.39 -69.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593627791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.225 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds