Wall clock time and date at job start Tue Mar 31 2020 17:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 H 1.09006 * 109.67617 * 306.94978 * 3 2 1 5 5 C 1.53290 * 109.68835 * 67.47089 * 3 2 1 6 6 O 1.42959 * 109.22677 * 172.02633 * 5 3 2 7 7 C 1.42961 * 114.16684 * 297.42177 * 6 5 3 8 8 C 1.52998 * 109.51419 * 182.50694 * 7 6 5 9 9 C 1.53009 * 109.50787 * 302.60502 * 7 6 5 10 10 C 1.53299 * 109.22540 * 62.57531 * 7 6 5 11 11 N 1.47153 * 109.68091 * 186.43968 * 3 2 1 12 12 S 1.65603 * 120.98192 * 9.71824 * 11 3 2 13 13 O 1.42096 * 106.40342 * 193.92209 * 12 11 3 14 14 O 1.42104 * 106.40136 * 326.83763 * 12 11 3 15 15 N 1.65599 * 107.21763 * 80.37688 * 12 11 3 16 16 C 1.46499 * 119.99876 * 80.42229 * 15 12 11 17 17 C 1.46501 * 120.00202 * 260.42010 * 15 12 11 18 18 H 1.09005 * 109.46765 * 1.25406 * 17 15 12 19 19 C 1.52999 * 109.47200 * 241.25718 * 17 15 12 20 20 C 1.50695 * 109.47155 * 121.25685 * 17 15 12 21 21 H 1.08000 * 119.99997 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00144 * 180.02562 * 20 17 15 23 23 N 1.31512 * 119.99942 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 119.99809 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47263 * 90.00302 * 24 22 20 26 26 H 1.48504 * 109.46796 * 209.99948 * 24 22 20 27 27 H 1.48499 * 109.47253 * 329.99729 * 24 22 20 28 28 H 1.08998 * 109.46903 * 304.18063 * 1 2 3 29 29 H 1.08999 * 109.47130 * 64.18157 * 1 2 3 30 30 H 1.09000 * 109.47237 * 184.18342 * 1 2 3 31 31 H 1.08997 * 109.46822 * 239.99411 * 2 1 3 32 32 H 1.09001 * 109.46999 * 119.99458 * 2 1 3 33 33 H 1.09008 * 109.50821 * 291.95247 * 5 3 2 34 34 H 1.09000 * 109.51061 * 52.10033 * 5 3 2 35 35 H 1.08994 * 109.47084 * 59.99565 * 8 7 6 36 36 H 1.08997 * 109.47222 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.46412 * 299.99550 * 8 7 6 38 38 H 1.08994 * 109.47044 * 60.00403 * 9 7 6 39 39 H 1.09000 * 109.46599 * 180.02562 * 9 7 6 40 40 H 1.08997 * 109.47010 * 299.99828 * 9 7 6 41 41 H 1.09003 * 109.67239 * 67.42125 * 10 7 6 42 42 H 1.08990 * 109.68185 * 187.93639 * 10 7 6 43 43 H 1.09003 * 109.47015 * 89.99807 * 16 15 12 44 44 H 1.08998 * 109.47359 * 209.99875 * 16 15 12 45 45 H 1.09007 * 109.46932 * 330.00197 * 16 15 12 46 46 H 1.09000 * 109.47079 * 179.97438 * 19 17 15 47 47 H 1.09004 * 109.46806 * 300.00298 * 19 17 15 48 48 H 1.09008 * 109.46957 * 59.99694 * 19 17 15 49 49 H 0.96990 * 120.00082 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5806 1.9942 -0.8203 5 6 1.6908 2.1137 1.3331 6 8 2.3288 3.3914 1.3983 7 6 3.7570 3.3345 1.3706 8 6 4.3275 4.7474 1.5081 9 6 4.2563 2.4668 2.5277 10 6 4.2121 2.7257 0.0393 11 7 3.5033 1.4508 -0.1554 12 16 4.3280 0.0662 -0.5364 13 8 5.7011 0.3363 -0.2898 14 8 3.6233 -1.0029 0.0798 15 7 4.1815 -0.1576 -2.1707 16 6 5.0408 0.5897 -3.0923 17 6 3.1926 -1.1029 -2.6949 18 1 2.6366 -1.5433 -1.8671 19 6 3.9072 -2.2084 -3.4747 20 6 2.2403 -0.3776 -3.6103 21 1 2.3599 0.6816 -3.7845 22 6 1.2162 -1.0660 -4.2254 23 7 1.0708 -2.3558 -4.0136 24 14 0.0362 -0.1670 -5.3606 25 1 0.5612 -0.2030 -6.7492 26 1 -1.2930 -0.8277 -5.3166 27 1 -0.0976 1.2443 -4.9183 28 1 -0.3633 0.5773 0.8502 29 1 -0.3633 0.4476 -0.9251 30 1 -0.3634 -1.0249 0.0750 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.6106 2.2421 1.4041 34 1 2.0390 1.4904 2.1568 35 1 3.9998 5.1812 2.4528 36 1 5.4164 4.7033 1.4864 37 1 3.9728 5.3643 0.6825 38 1 3.8510 1.4599 2.4280 39 1 5.3453 2.4242 2.5062 40 1 3.9286 2.8985 3.4733 41 1 3.9719 3.4070 -0.7770 42 1 5.2872 2.5485 0.0652 43 1 5.9522 0.0221 -3.2803 44 1 4.5125 0.7506 -4.0320 45 1 5.2971 1.5526 -2.6501 46 1 3.1715 -2.9120 -3.8643 47 1 4.4633 -1.7679 -4.3023 48 1 4.5961 -2.7330 -2.8125 49 1 0.3506 -2.8402 -4.4465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593628260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:25 Heat of formation + Delta-G solvation = -106.176973 kcal Electronic energy + Delta-G solvation = -31044.523983 eV Core-core repulsion = 27134.335932 eV Total energy + Delta-G solvation = -3910.188051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.91462 -37.21876 -36.19745 -35.50241 -35.16592 -33.99544 -32.63146 -31.71926 -29.12519 -27.99531 -27.14543 -25.92429 -25.38182 -25.22459 -23.59049 -21.26948 -20.75144 -19.64007 -18.27104 -17.26861 -16.79146 -16.67793 -16.29251 -15.69386 -15.25692 -14.86078 -14.77791 -14.37132 -14.29721 -13.74040 -13.53418 -13.22364 -13.02895 -12.72911 -12.66020 -12.43256 -12.32254 -12.12527 -12.02594 -11.92764 -11.84314 -11.62922 -11.54558 -11.44886 -11.27900 -11.15383 -11.00944 -10.90736 -10.89419 -10.67606 -10.53490 -10.28300 -10.17126 -10.02086 -9.93808 -9.59575 -9.19696 -8.52410 -8.49336 -7.97898 -6.12675 -4.20900 1.15477 3.21939 3.29912 3.30577 3.36685 3.74653 4.03307 4.32651 4.63277 4.76840 4.84034 4.95982 5.04901 5.16834 5.18316 5.34617 5.43716 5.51031 5.55159 5.58413 5.65644 5.69636 5.72549 5.78429 5.87276 5.91101 5.97581 6.08485 6.13222 6.14544 6.24341 6.27076 6.42993 6.54027 6.62200 6.71300 6.78641 6.85635 6.91386 6.96502 7.17018 7.27949 7.46358 7.59704 7.74412 8.01063 8.21902 8.81978 9.45591 10.92226 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.005502 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.495138 B = 5087.558948 C = 5763.435157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C 0.131 3.869 4 H 0.082 0.918 5 C 0.052 3.948 6 O -0.372 6.372 7 C 0.102 3.898 8 C -0.136 4.136 9 C -0.180 4.180 10 C 0.097 3.903 11 N -1.006 6.006 12 S 2.777 3.223 13 O -0.999 6.999 14 O -0.974 6.974 15 N -0.991 5.991 16 C 0.108 3.892 17 C 0.261 3.739 18 H 0.069 0.931 19 C -0.146 4.146 20 C -0.524 4.524 21 H 0.062 0.938 22 C 0.068 3.932 23 N -0.885 5.885 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.093 0.907 47 H 0.032 0.968 48 H 0.010 0.990 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 10.026 8.735 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.025 3.975 4 H 0.100 0.900 5 C -0.026 4.026 6 O -0.291 6.291 7 C 0.061 3.939 8 C -0.194 4.194 9 C -0.238 4.238 10 C -0.030 4.030 11 N -0.844 5.844 12 S 2.789 3.211 13 O -0.983 6.983 14 O -0.958 6.958 15 N -0.833 5.833 16 C -0.038 4.038 17 C 0.158 3.842 18 H 0.087 0.913 19 C -0.205 4.205 20 C -0.563 4.563 21 H 0.080 0.920 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.051 0.949 48 H 0.029 0.971 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.764 9.465 9.300 13.793 hybrid contribution -0.777 0.440 -1.138 1.447 sum 2.987 9.905 8.162 13.177 Atomic orbital electron populations 1.21688 0.95266 1.01950 1.01068 1.22617 0.96793 0.93331 1.07076 1.21674 0.78992 0.98752 0.98130 0.89972 1.23093 0.97900 0.85045 0.96524 1.87942 1.17926 1.28775 1.94458 1.21770 0.81975 0.96165 0.94005 1.21721 1.00582 0.93999 1.03050 1.22416 1.02153 1.00731 0.98471 1.22077 0.97624 0.85780 0.97474 1.58415 1.15929 1.24387 1.85676 1.02091 0.72450 0.72929 0.73679 1.93502 1.33416 1.85760 1.85620 1.93655 1.73250 1.53672 1.75231 1.57758 1.48805 1.53562 1.23156 1.21159 0.93465 0.93475 0.95727 1.18909 0.84571 0.85571 0.95115 0.91326 1.22081 0.99613 1.00105 0.98743 1.21318 1.11748 0.95409 1.27873 0.91975 1.24876 0.97379 0.94820 0.96434 1.69866 1.31947 1.07172 1.43295 0.86589 0.80412 0.79858 0.81096 1.20723 1.21150 1.19893 0.93728 0.92352 0.92186 0.87484 0.89175 0.87937 0.92429 0.91594 0.90878 0.91578 0.91995 0.91183 0.91651 0.90922 0.88320 0.93847 0.90073 0.93708 0.88811 0.94855 0.97063 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.80 37.16 0.36 -1.89 16 2 C -0.16 -2.90 3.75 -26.73 -0.10 -3.00 16 3 C 0.13 2.12 3.14 -67.42 -0.21 1.91 16 4 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 5 C 0.05 0.73 5.51 37.31 0.21 0.93 16 6 O -0.37 -5.23 10.22 -35.23 -0.36 -5.59 16 7 C 0.10 1.29 1.11 -90.46 -0.10 1.19 16 8 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 9 C -0.18 -2.22 8.09 37.16 0.30 -1.92 16 10 C 0.10 1.36 5.40 -3.53 -0.02 1.34 16 11 N -1.01 -16.77 2.92 -106.02 -0.31 -17.08 16 12 S 2.78 54.76 5.60 -107.50 -0.60 54.16 16 13 O -1.00 -20.50 15.99 -57.17 -0.91 -21.41 16 14 O -0.97 -21.25 12.16 -57.17 -0.70 -21.95 16 15 N -0.99 -20.41 3.12 -115.85 -0.36 -20.77 16 16 C 0.11 1.93 9.35 59.85 0.56 2.49 16 17 C 0.26 6.16 1.85 -69.08 -0.13 6.04 16 18 H 0.07 1.78 4.93 -51.93 -0.26 1.52 16 19 C -0.15 -3.42 8.99 37.16 0.33 -3.09 16 20 C -0.52 -12.93 7.81 -34.44 -0.27 -13.20 16 21 H 0.06 1.52 7.24 -52.49 -0.38 1.14 16 22 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 23 N -0.88 -23.43 11.32 55.43 0.63 -22.80 16 24 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.04 0.57 6.68 -51.93 -0.35 0.22 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.11 2.31 3.15 -51.93 -0.16 2.14 16 32 H 0.09 1.67 6.56 -51.93 -0.34 1.32 16 33 H 0.10 1.24 6.97 -51.92 -0.36 0.88 16 34 H 0.06 0.79 6.22 -51.93 -0.32 0.46 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.86 6.12 -51.93 -0.32 0.54 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.36 6.78 -51.93 -0.35 1.01 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 45 H 0.04 0.69 8.02 -51.92 -0.42 0.27 16 46 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 47 H 0.03 0.73 7.70 -51.93 -0.40 0.33 16 48 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 49 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -28.79 372.40 -8.97 -37.77 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.12 Total: 5.69 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 1.17 Total: -8.55 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.04 Total: -60.65 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -1.97 Total: -48.95 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.60 Total: 54.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.79 -8.97 -37.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.410 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds