Wall clock time and date at job start Tue Mar 31 2020 17:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 H 1.09006 * 109.67617 * 306.94978 * 3 2 1 5 5 C 1.53290 * 109.68835 * 67.47089 * 3 2 1 6 6 O 1.42959 * 109.22677 * 172.02633 * 5 3 2 7 7 C 1.42961 * 114.16684 * 297.42177 * 6 5 3 8 8 C 1.52998 * 109.51419 * 182.50694 * 7 6 5 9 9 C 1.53009 * 109.50787 * 302.60502 * 7 6 5 10 10 C 1.53299 * 109.22540 * 62.57531 * 7 6 5 11 11 N 1.47153 * 109.68091 * 186.43968 * 3 2 1 12 12 S 1.65603 * 120.98192 * 9.71824 * 11 3 2 13 13 O 1.42096 * 106.40342 * 193.92209 * 12 11 3 14 14 O 1.42104 * 106.40136 * 326.83763 * 12 11 3 15 15 N 1.65599 * 107.21763 * 80.37688 * 12 11 3 16 16 C 1.46499 * 119.99876 * 80.42229 * 15 12 11 17 17 C 1.46501 * 120.00202 * 260.42010 * 15 12 11 18 18 H 1.09005 * 109.46765 * 1.25406 * 17 15 12 19 19 C 1.52999 * 109.47200 * 241.25718 * 17 15 12 20 20 C 1.50695 * 109.47155 * 121.25685 * 17 15 12 21 21 H 1.08000 * 119.99997 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00144 * 180.02562 * 20 17 15 23 23 N 1.31512 * 119.99942 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 119.99809 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47263 * 90.00302 * 24 22 20 26 26 H 1.48504 * 109.46796 * 209.99948 * 24 22 20 27 27 H 1.48499 * 109.47253 * 329.99729 * 24 22 20 28 28 H 1.08998 * 109.46903 * 304.18063 * 1 2 3 29 29 H 1.08999 * 109.47130 * 64.18157 * 1 2 3 30 30 H 1.09000 * 109.47237 * 184.18342 * 1 2 3 31 31 H 1.08997 * 109.46822 * 239.99411 * 2 1 3 32 32 H 1.09001 * 109.46999 * 119.99458 * 2 1 3 33 33 H 1.09008 * 109.50821 * 291.95247 * 5 3 2 34 34 H 1.09000 * 109.51061 * 52.10033 * 5 3 2 35 35 H 1.08994 * 109.47084 * 59.99565 * 8 7 6 36 36 H 1.08997 * 109.47222 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.46412 * 299.99550 * 8 7 6 38 38 H 1.08994 * 109.47044 * 60.00403 * 9 7 6 39 39 H 1.09000 * 109.46599 * 180.02562 * 9 7 6 40 40 H 1.08997 * 109.47010 * 299.99828 * 9 7 6 41 41 H 1.09003 * 109.67239 * 67.42125 * 10 7 6 42 42 H 1.08990 * 109.68185 * 187.93639 * 10 7 6 43 43 H 1.09003 * 109.47015 * 89.99807 * 16 15 12 44 44 H 1.08998 * 109.47359 * 209.99875 * 16 15 12 45 45 H 1.09007 * 109.46932 * 330.00197 * 16 15 12 46 46 H 1.09000 * 109.47079 * 179.97438 * 19 17 15 47 47 H 1.09004 * 109.46806 * 300.00298 * 19 17 15 48 48 H 1.09008 * 109.46957 * 59.99694 * 19 17 15 49 49 H 0.96990 * 120.00082 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5806 1.9942 -0.8203 5 6 1.6908 2.1137 1.3331 6 8 2.3288 3.3914 1.3983 7 6 3.7570 3.3345 1.3706 8 6 4.3275 4.7474 1.5081 9 6 4.2563 2.4668 2.5277 10 6 4.2121 2.7257 0.0393 11 7 3.5033 1.4508 -0.1554 12 16 4.3280 0.0662 -0.5364 13 8 5.7011 0.3363 -0.2898 14 8 3.6233 -1.0029 0.0798 15 7 4.1815 -0.1576 -2.1707 16 6 5.0408 0.5897 -3.0923 17 6 3.1926 -1.1029 -2.6949 18 1 2.6366 -1.5433 -1.8671 19 6 3.9072 -2.2084 -3.4747 20 6 2.2403 -0.3776 -3.6103 21 1 2.3599 0.6816 -3.7845 22 6 1.2162 -1.0660 -4.2254 23 7 1.0708 -2.3558 -4.0136 24 14 0.0362 -0.1670 -5.3606 25 1 0.5612 -0.2030 -6.7492 26 1 -1.2930 -0.8277 -5.3166 27 1 -0.0976 1.2443 -4.9183 28 1 -0.3633 0.5773 0.8502 29 1 -0.3633 0.4476 -0.9251 30 1 -0.3634 -1.0249 0.0750 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.6106 2.2421 1.4041 34 1 2.0390 1.4904 2.1568 35 1 3.9998 5.1812 2.4528 36 1 5.4164 4.7033 1.4864 37 1 3.9728 5.3643 0.6825 38 1 3.8510 1.4599 2.4280 39 1 5.3453 2.4242 2.5062 40 1 3.9286 2.8985 3.4733 41 1 3.9719 3.4070 -0.7770 42 1 5.2872 2.5485 0.0652 43 1 5.9522 0.0221 -3.2803 44 1 4.5125 0.7506 -4.0320 45 1 5.2971 1.5526 -2.6501 46 1 3.1715 -2.9120 -3.8643 47 1 4.4633 -1.7679 -4.3023 48 1 4.5961 -2.7330 -2.8125 49 1 0.3506 -2.8402 -4.4465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593628260.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:24 Heat of formation + Delta-G solvation = -124.757039 kcal Electronic energy + Delta-G solvation = -31045.329675 eV Core-core repulsion = 27134.335932 eV Total energy + Delta-G solvation = -3910.993743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.02795 -38.79235 -37.90359 -36.99515 -36.58082 -35.11021 -34.49254 -32.91322 -30.93564 -29.08037 -28.09539 -27.34997 -27.10937 -26.74755 -24.79083 -22.68554 -22.44556 -20.75822 -19.78111 -18.84843 -18.33458 -18.10585 -17.79013 -17.06497 -16.71609 -16.25515 -15.96059 -15.85202 -15.50241 -15.22147 -14.95189 -14.77132 -14.57286 -14.16370 -13.91569 -13.71119 -13.63456 -13.42655 -13.26035 -13.21428 -13.14519 -13.03956 -12.98600 -12.85801 -12.77353 -12.69076 -12.58526 -12.28835 -12.19535 -12.16618 -12.13082 -11.90426 -11.89995 -11.46697 -11.15053 -11.09215 -10.86394 -10.44035 -9.81969 -9.59413 -8.06650 -6.19989 -0.37983 1.44393 1.47568 1.55114 1.89586 2.45031 2.51508 2.74128 3.22503 3.31742 3.53789 3.69883 3.90722 3.93129 4.02285 4.09801 4.15838 4.29705 4.44899 4.47493 4.60465 4.66147 4.67213 4.69093 4.74618 4.77601 4.82049 4.85721 4.92473 4.94317 4.96949 5.00982 5.09169 5.13157 5.20482 5.24307 5.27322 5.35779 5.43449 5.50090 5.56965 5.66271 5.74673 5.90959 6.11318 6.23046 6.30624 6.87526 7.48970 8.97867 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.005502 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.495138 B = 5087.558948 C = 5763.435157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.161 4.161 3 C 0.133 3.867 4 H 0.078 0.922 5 C 0.057 3.943 6 O -0.376 6.376 7 C 0.098 3.902 8 C -0.132 4.132 9 C -0.182 4.182 10 C 0.088 3.912 11 N -1.001 6.001 12 S 2.785 3.215 13 O -1.008 7.008 14 O -1.001 7.001 15 N -0.999 5.999 16 C 0.101 3.899 17 C 0.267 3.733 18 H 0.044 0.956 19 C -0.141 4.141 20 C -0.521 4.521 21 H 0.063 0.937 22 C 0.025 3.975 23 N -0.913 5.913 24 Si 0.949 3.051 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.267 1.267 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.015 0.985 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 12.646 9.317 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.199 4.199 3 C 0.027 3.973 4 H 0.096 0.904 5 C -0.021 4.021 6 O -0.295 6.295 7 C 0.057 3.943 8 C -0.189 4.189 9 C -0.239 4.239 10 C -0.037 4.037 11 N -0.842 5.842 12 S 2.798 3.202 13 O -0.992 6.992 14 O -0.985 6.985 15 N -0.840 5.840 16 C -0.044 4.044 17 C 0.163 3.837 18 H 0.061 0.939 19 C -0.201 4.201 20 C -0.561 4.561 21 H 0.082 0.918 22 C -0.175 4.175 23 N -0.552 5.552 24 Si 0.775 3.225 25 H -0.205 1.205 26 H -0.214 1.214 27 H -0.192 1.192 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.034 0.966 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.831 12.100 9.874 16.081 hybrid contribution -0.729 -0.359 -1.271 1.508 sum 3.102 11.741 8.604 14.883 Atomic orbital electron populations 1.21659 0.93732 1.01995 1.02154 1.22498 0.98240 0.94264 1.04903 1.21692 0.78452 0.97552 0.99615 0.90398 1.23084 0.99176 0.85015 0.94789 1.87951 1.18736 1.28506 1.94279 1.21977 0.81407 0.97890 0.93010 1.21745 1.01550 0.91884 1.03750 1.22447 1.02616 0.99606 0.99251 1.22395 0.97658 0.84605 0.99079 1.58179 1.16190 1.24579 1.85237 1.01673 0.72143 0.73126 0.73268 1.93480 1.34094 1.86026 1.85645 1.93628 1.73690 1.55451 1.75712 1.57703 1.48639 1.53748 1.23926 1.21344 0.93186 0.94539 0.95366 1.18593 0.84958 0.86040 0.94063 0.93882 1.21989 0.99138 0.99884 0.99066 1.21471 1.11778 0.95387 1.27448 0.91839 1.25527 0.98831 0.95356 0.97768 1.69991 1.32522 1.08398 1.44333 0.85702 0.78411 0.79015 0.79353 1.20548 1.21389 1.19183 0.90241 0.93165 0.93113 0.90931 0.90113 0.85845 0.92261 0.90628 0.89160 0.91190 0.94079 0.90427 0.90032 0.89709 0.88004 0.93118 0.90460 0.91149 0.90962 0.94022 0.96586 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.80 71.98 0.71 -3.61 16 2 C -0.16 -5.87 3.75 30.60 0.11 -5.76 16 3 C 0.13 4.19 3.14 44.96 0.14 4.33 16 4 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 5 C 0.06 1.47 5.51 72.08 0.40 1.87 16 6 O -0.38 -9.53 10.22 -148.98 -1.52 -11.05 16 7 C 0.10 2.22 1.11 -10.69 -0.01 2.21 16 8 C -0.13 -2.11 8.85 71.98 0.64 -1.47 16 9 C -0.18 -4.08 8.09 71.99 0.58 -3.49 16 10 C 0.09 2.29 5.40 86.35 0.47 2.75 16 11 N -1.00 -32.43 2.92 -489.35 -1.43 -33.86 16 12 S 2.79 109.85 5.60 -56.49 -0.32 109.53 16 13 O -1.01 -40.67 15.99 -128.00 -2.05 -42.72 16 14 O -1.00 -44.90 12.16 -128.00 -1.56 -46.46 16 15 N -1.00 -41.17 3.12 -520.44 -1.62 -42.79 16 16 C 0.10 3.51 9.35 127.77 1.20 4.70 16 17 C 0.27 12.88 1.85 44.24 0.08 12.96 16 18 H 0.04 2.34 4.93 -2.38 -0.01 2.33 16 19 C -0.14 -6.75 8.99 71.98 0.65 -6.11 16 20 C -0.52 -25.87 7.81 25.60 0.20 -25.67 16 21 H 0.06 3.07 7.24 -2.91 -0.02 3.05 16 22 C 0.03 1.29 5.30 84.66 0.45 1.74 16 23 N -0.91 -49.41 11.32 21.45 0.24 -49.17 16 24 Si 0.95 40.82 29.54 68.60 2.03 42.85 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 28 H 0.08 1.89 6.68 -2.39 -0.02 1.87 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 3.22 3.15 -2.39 -0.01 3.22 16 32 H 0.08 3.06 6.56 -2.39 -0.02 3.04 16 33 H 0.12 2.62 6.97 -2.38 -0.02 2.61 16 34 H 0.06 1.52 6.22 -2.39 -0.01 1.50 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.04 1.09 6.12 -2.39 -0.01 1.07 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.10 2.59 6.78 -2.39 -0.02 2.57 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.72 6.92 -2.39 -0.02 2.70 16 45 H 0.07 2.04 8.02 -2.38 -0.02 2.02 16 46 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 47 H 0.04 1.85 7.70 -2.38 -0.02 1.84 16 48 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.26 13.64 8.31 -92.72 -0.77 12.87 16 Total: -1.00 -61.97 372.40 0.31 -61.66 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.93 Total: 27.54 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.61 Total: -15.54 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -2.81 Total: -125.82 kcal Atomic # 8 Polarization: -95.09 SS G_CDS: -5.13 Total: -100.22 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 109.85 SS G_CDS: -0.32 Total: 109.53 kcal Total: -61.97 0.31 -61.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628260.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.095 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds