Wall clock time and date at job start Tue Mar 31 2020 17:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 H 1.09000 * 109.67677 * 54.35597 * 3 2 1 5 5 C 1.53299 * 109.68328 * 293.80184 * 3 2 1 6 6 O 1.42955 * 109.22466 * 187.97114 * 5 3 2 7 7 C 1.42966 * 114.16577 * 62.58326 * 6 5 3 8 8 C 1.52998 * 109.51258 * 177.49500 * 7 6 5 9 9 C 1.53001 * 109.55730 * 57.36523 * 7 6 5 10 10 C 1.53296 * 109.21883 * 297.41610 * 7 6 5 11 11 N 1.47148 * 108.38545 * 52.30583 * 10 7 6 12 12 S 1.65605 * 120.98704 * 129.48236 * 11 10 7 13 13 O 1.42090 * 106.40416 * 213.25151 * 12 11 10 14 14 O 1.42102 * 106.40079 * 346.17510 * 12 11 10 15 15 N 1.65605 * 107.21666 * 99.71022 * 12 11 10 16 16 C 1.46500 * 120.00206 * 279.29955 * 15 12 11 17 17 C 1.46501 * 119.99933 * 99.29964 * 15 12 11 18 18 H 1.09003 * 109.46950 * 4.80474 * 17 15 12 19 19 C 1.52998 * 109.47376 * 124.80578 * 17 15 12 20 20 C 1.50703 * 109.46905 * 244.80747 * 17 15 12 21 21 H 1.07994 * 120.00075 * 354.45669 * 20 17 15 22 22 C 1.37872 * 119.99736 * 174.46113 * 20 17 15 23 23 N 1.31519 * 120.00596 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 120.00065 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46993 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47153 * 119.99748 * 24 22 20 27 27 H 1.48503 * 109.47381 * 239.99796 * 24 22 20 28 28 H 1.08999 * 109.47332 * 55.92974 * 1 2 3 29 29 H 1.09002 * 109.47584 * 295.92382 * 1 2 3 30 30 H 1.09000 * 109.47115 * 175.92688 * 1 2 3 31 31 H 1.08997 * 109.47433 * 119.99617 * 2 1 3 32 32 H 1.08994 * 109.47325 * 240.00080 * 2 1 3 33 33 H 1.09002 * 109.51156 * 307.90201 * 5 3 2 34 34 H 1.09004 * 109.50906 * 68.04761 * 5 3 2 35 35 H 1.09004 * 109.46759 * 179.74152 * 8 7 6 36 36 H 1.08996 * 109.47316 * 299.74129 * 8 7 6 37 37 H 1.08999 * 109.47068 * 59.74425 * 8 7 6 38 38 H 1.09005 * 109.46985 * 294.03295 * 9 7 6 39 39 H 1.09001 * 109.46748 * 54.03065 * 9 7 6 40 40 H 1.08991 * 109.47166 * 174.03047 * 9 7 6 41 41 H 1.08998 * 109.68521 * 292.57435 * 10 7 6 42 42 H 1.09007 * 109.68231 * 172.02368 * 10 7 6 43 43 H 1.08994 * 109.47109 * 89.99886 * 16 15 12 44 44 H 1.08991 * 109.47062 * 209.99979 * 16 15 12 45 45 H 1.08997 * 109.46914 * 329.99876 * 16 15 12 46 46 H 1.08990 * 109.47142 * 59.99668 * 19 17 15 47 47 H 1.08998 * 109.47165 * 180.02562 * 19 17 15 48 48 H 1.09004 * 109.46718 * 299.99996 * 19 17 15 49 49 H 0.96995 * 120.00880 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5984 1.9879 0.8341 5 6 1.6628 2.1235 -1.3206 6 8 2.2994 3.4017 -1.3897 7 6 3.7279 3.3447 -1.3924 8 6 4.2955 4.7587 -1.5314 9 6 4.2040 2.4853 -2.5653 10 6 4.2107 2.7263 -0.0754 11 7 3.5062 1.4499 0.1238 12 16 4.3387 0.0627 0.4773 13 8 3.6223 -1.0019 -0.1330 14 8 5.7066 0.3354 0.2056 15 7 4.2250 -0.1740 2.1124 16 6 5.1066 0.5619 3.0222 17 6 3.2428 -1.1192 2.6492 18 1 2.7422 -1.6294 1.8263 19 6 3.9539 -2.1483 3.5302 20 6 2.2242 -0.3724 3.4713 21 1 2.3498 0.6839 3.6572 22 6 1.1320 -1.0380 3.9860 23 7 0.9787 -2.3243 3.7593 24 14 -0.1304 -0.1125 5.0056 25 1 0.2693 1.3137 5.1129 26 1 -1.4600 -0.2055 4.3508 27 1 -0.2044 -0.7099 6.3632 28 1 -0.3634 0.5757 -0.8512 29 1 -0.3634 0.4493 0.9242 30 1 -0.3633 -1.0251 -0.0730 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.9936 1.5063 -2.1560 34 1 0.5815 2.2523 -1.3680 35 1 5.3846 4.7148 -1.5288 36 1 3.9518 5.1977 -2.4680 37 1 3.9545 5.3708 -0.6965 38 1 3.8901 1.4530 -2.4103 39 1 3.7697 2.8619 -3.4914 40 1 5.2911 2.5287 -2.6298 41 1 3.9879 3.4016 0.7507 42 1 5.2851 2.5487 -0.1254 43 1 4.6314 1.5000 3.3089 44 1 5.2923 -0.0384 3.9128 45 1 6.0519 0.7715 2.5217 46 1 4.4545 -1.6382 4.3530 47 1 3.2232 -2.8519 3.9291 48 1 4.6907 -2.6884 2.9355 49 1 0.2101 -2.7925 4.1211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593628261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:28 Heat of formation + Delta-G solvation = -107.168517 kcal Electronic energy + Delta-G solvation = -31125.432169 eV Core-core repulsion = 27215.201122 eV Total energy + Delta-G solvation = -3910.231047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.88357 -37.20001 -36.21220 -35.47820 -35.14724 -33.97406 -32.60844 -31.67332 -29.14646 -27.94620 -27.11795 -25.97113 -25.49559 -25.09875 -23.56028 -21.20141 -20.70930 -19.61402 -18.23972 -17.26860 -16.75944 -16.66153 -16.29109 -15.66995 -15.24535 -14.82990 -14.74479 -14.36429 -14.28242 -13.70782 -13.57328 -13.23528 -13.00066 -12.76360 -12.66136 -12.42188 -12.28224 -12.11672 -12.02448 -11.91245 -11.82907 -11.62465 -11.52206 -11.42494 -11.20410 -11.12258 -11.04784 -10.87428 -10.85028 -10.63376 -10.50073 -10.39164 -10.13515 -9.99220 -9.85801 -9.55057 -9.22362 -8.50851 -8.48593 -7.97507 -6.12729 -4.19843 1.17906 3.21379 3.30753 3.32067 3.38246 3.77328 4.03791 4.33715 4.65474 4.79264 4.86217 4.98609 5.07523 5.19118 5.21566 5.39226 5.46668 5.52353 5.60282 5.62160 5.68274 5.72332 5.75557 5.82755 5.90895 5.95029 5.99780 6.11429 6.12892 6.17623 6.26125 6.28504 6.45252 6.55861 6.63386 6.72226 6.75000 6.84757 6.92734 6.98882 7.17938 7.30730 7.44341 7.59665 7.74366 7.95103 8.20825 8.84325 9.46768 10.93297 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.005741 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.276844 B = 4876.255799 C = 5650.868912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.161 4.161 3 C 0.132 3.868 4 H 0.082 0.918 5 C 0.053 3.947 6 O -0.372 6.372 7 C 0.102 3.898 8 C -0.136 4.136 9 C -0.179 4.179 10 C 0.097 3.903 11 N -1.005 6.005 12 S 2.778 3.222 13 O -0.973 6.973 14 O -1.001 7.001 15 N -0.991 5.991 16 C 0.099 3.901 17 C 0.259 3.741 18 H 0.073 0.927 19 C -0.142 4.142 20 C -0.523 4.523 21 H 0.062 0.938 22 C 0.069 3.931 23 N -0.885 5.885 24 Si 0.889 3.111 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.035 0.965 47 H 0.085 0.915 48 H 0.013 0.987 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 9.795 -8.239 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C 0.025 3.975 4 H 0.100 0.900 5 C -0.025 4.025 6 O -0.291 6.291 7 C 0.061 3.939 8 C -0.193 4.193 9 C -0.236 4.236 10 C -0.029 4.029 11 N -0.843 5.843 12 S 2.790 3.210 13 O -0.957 6.957 14 O -0.985 6.985 15 N -0.833 5.833 16 C -0.048 4.048 17 C 0.157 3.843 18 H 0.090 0.910 19 C -0.202 4.202 20 C -0.562 4.562 21 H 0.080 0.920 22 C -0.134 4.134 23 N -0.523 5.523 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.103 0.897 48 H 0.032 0.968 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.270 9.241 -8.824 13.472 hybrid contribution -0.901 0.453 1.113 1.502 sum 3.369 9.694 -7.711 12.837 Atomic orbital electron populations 1.21667 0.95380 1.01887 1.00883 1.22615 0.96744 0.93289 1.07240 1.21670 0.78795 0.98816 0.98177 0.90014 1.23090 0.97841 0.84938 0.96669 1.87940 1.17904 1.28763 1.94533 1.21767 0.81995 0.96124 0.94039 1.21722 1.00566 0.94030 1.03030 1.22403 1.02151 1.00730 0.98353 1.22055 0.97594 0.85737 0.97513 1.58384 1.15684 1.24094 1.86148 1.02017 0.72357 0.72933 0.73704 1.93653 1.72688 1.53978 1.75390 1.93492 1.33974 1.85816 1.85190 1.57726 1.48157 1.53885 1.23513 1.21253 0.91976 0.96187 0.95380 1.18912 0.84685 0.85786 0.94960 0.91001 1.22031 0.99285 0.99819 0.99036 1.21368 1.06209 0.95784 1.32867 0.92025 1.24877 0.97643 0.94807 0.96116 1.69908 1.29517 1.07936 1.44919 0.86588 0.81506 0.80078 0.80128 1.19821 1.20871 1.21047 0.93851 0.92486 0.92236 0.87125 0.89150 0.92499 0.87975 0.90899 0.91621 0.91585 0.92149 0.91637 0.91199 0.90940 0.88351 0.93853 0.90579 0.92390 0.94596 0.89668 0.96751 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.78 37.15 0.36 -1.96 16 2 C -0.16 -2.99 3.76 -26.73 -0.10 -3.09 16 3 C 0.13 2.18 3.16 -67.42 -0.21 1.97 16 4 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 5 C 0.05 0.75 5.48 37.31 0.20 0.95 16 6 O -0.37 -5.32 10.23 -35.23 -0.36 -5.68 16 7 C 0.10 1.31 1.11 -90.47 -0.10 1.20 16 8 C -0.14 -1.34 8.85 37.16 0.33 -1.01 16 9 C -0.18 -2.22 7.95 37.16 0.30 -1.93 16 10 C 0.10 1.39 5.40 -3.54 -0.02 1.37 16 11 N -1.00 -16.94 2.82 -106.03 -0.30 -17.24 16 12 S 2.78 54.83 5.67 -107.50 -0.61 54.22 16 13 O -0.97 -21.34 12.07 -57.17 -0.69 -22.03 16 14 O -1.00 -20.38 15.39 -57.17 -0.88 -21.26 16 15 N -0.99 -20.30 3.12 -115.86 -0.36 -20.67 16 16 C 0.10 1.73 10.10 59.85 0.60 2.34 16 17 C 0.26 6.09 1.73 -69.08 -0.12 5.97 16 18 H 0.07 1.87 5.20 -51.93 -0.27 1.60 16 19 C -0.14 -3.25 8.90 37.16 0.33 -2.92 16 20 C -0.52 -12.90 7.84 -34.44 -0.27 -13.17 16 21 H 0.06 1.52 7.72 -52.49 -0.41 1.12 16 22 C 0.07 1.74 5.33 -17.82 -0.09 1.65 16 23 N -0.88 -23.46 11.74 55.43 0.65 -22.81 16 24 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.04 0.58 6.63 -51.93 -0.34 0.23 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 2.43 3.03 -51.93 -0.16 2.27 16 32 H 0.09 1.71 6.48 -51.93 -0.34 1.38 16 33 H 0.06 0.79 6.38 -51.93 -0.33 0.46 16 34 H 0.10 1.28 6.94 -51.93 -0.36 0.92 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.85 6.32 -51.93 -0.33 0.53 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.36 6.78 -51.92 -0.35 1.01 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.32 6.19 -51.93 -0.32 0.99 16 45 H 0.06 0.93 7.14 -51.93 -0.37 0.56 16 46 H 0.04 0.76 6.52 -51.93 -0.34 0.42 16 47 H 0.08 2.12 6.52 -51.93 -0.34 1.78 16 48 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -28.74 371.00 -8.81 -37.55 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.04 Total: 5.96 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 1.21 Total: -8.62 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.01 Total: -60.71 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -1.93 Total: -48.98 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 54.83 SS G_CDS: -0.61 Total: 54.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.74 -8.81 -37.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.622 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds