Wall clock time and date at job start Tue Mar 31 2020 17:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 H 1.09000 * 109.67677 * 54.35597 * 3 2 1 5 5 C 1.53299 * 109.68328 * 293.80184 * 3 2 1 6 6 O 1.42955 * 109.22466 * 187.97114 * 5 3 2 7 7 C 1.42966 * 114.16577 * 62.58326 * 6 5 3 8 8 C 1.52998 * 109.51258 * 177.49500 * 7 6 5 9 9 C 1.53001 * 109.55730 * 57.36523 * 7 6 5 10 10 C 1.53296 * 109.21883 * 297.41610 * 7 6 5 11 11 N 1.47148 * 108.38545 * 52.30583 * 10 7 6 12 12 S 1.65605 * 120.98704 * 129.48236 * 11 10 7 13 13 O 1.42090 * 106.40416 * 213.25151 * 12 11 10 14 14 O 1.42102 * 106.40079 * 346.17510 * 12 11 10 15 15 N 1.65605 * 107.21666 * 99.71022 * 12 11 10 16 16 C 1.46500 * 120.00206 * 279.29955 * 15 12 11 17 17 C 1.46501 * 119.99933 * 99.29964 * 15 12 11 18 18 H 1.09003 * 109.46950 * 4.80474 * 17 15 12 19 19 C 1.52998 * 109.47376 * 124.80578 * 17 15 12 20 20 C 1.50703 * 109.46905 * 244.80747 * 17 15 12 21 21 H 1.07994 * 120.00075 * 354.45669 * 20 17 15 22 22 C 1.37872 * 119.99736 * 174.46113 * 20 17 15 23 23 N 1.31519 * 120.00596 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 120.00065 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46993 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47153 * 119.99748 * 24 22 20 27 27 H 1.48503 * 109.47381 * 239.99796 * 24 22 20 28 28 H 1.08999 * 109.47332 * 55.92974 * 1 2 3 29 29 H 1.09002 * 109.47584 * 295.92382 * 1 2 3 30 30 H 1.09000 * 109.47115 * 175.92688 * 1 2 3 31 31 H 1.08997 * 109.47433 * 119.99617 * 2 1 3 32 32 H 1.08994 * 109.47325 * 240.00080 * 2 1 3 33 33 H 1.09002 * 109.51156 * 307.90201 * 5 3 2 34 34 H 1.09004 * 109.50906 * 68.04761 * 5 3 2 35 35 H 1.09004 * 109.46759 * 179.74152 * 8 7 6 36 36 H 1.08996 * 109.47316 * 299.74129 * 8 7 6 37 37 H 1.08999 * 109.47068 * 59.74425 * 8 7 6 38 38 H 1.09005 * 109.46985 * 294.03295 * 9 7 6 39 39 H 1.09001 * 109.46748 * 54.03065 * 9 7 6 40 40 H 1.08991 * 109.47166 * 174.03047 * 9 7 6 41 41 H 1.08998 * 109.68521 * 292.57435 * 10 7 6 42 42 H 1.09007 * 109.68231 * 172.02368 * 10 7 6 43 43 H 1.08994 * 109.47109 * 89.99886 * 16 15 12 44 44 H 1.08991 * 109.47062 * 209.99979 * 16 15 12 45 45 H 1.08997 * 109.46914 * 329.99876 * 16 15 12 46 46 H 1.08990 * 109.47142 * 59.99668 * 19 17 15 47 47 H 1.08998 * 109.47165 * 180.02562 * 19 17 15 48 48 H 1.09004 * 109.46718 * 299.99996 * 19 17 15 49 49 H 0.96995 * 120.00880 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5984 1.9879 0.8341 5 6 1.6628 2.1235 -1.3206 6 8 2.2994 3.4017 -1.3897 7 6 3.7279 3.3447 -1.3924 8 6 4.2955 4.7587 -1.5314 9 6 4.2040 2.4853 -2.5653 10 6 4.2107 2.7263 -0.0754 11 7 3.5062 1.4499 0.1238 12 16 4.3387 0.0627 0.4773 13 8 3.6223 -1.0019 -0.1330 14 8 5.7066 0.3354 0.2056 15 7 4.2250 -0.1740 2.1124 16 6 5.1066 0.5619 3.0222 17 6 3.2428 -1.1192 2.6492 18 1 2.7422 -1.6294 1.8263 19 6 3.9539 -2.1483 3.5302 20 6 2.2242 -0.3724 3.4713 21 1 2.3498 0.6839 3.6572 22 6 1.1320 -1.0380 3.9860 23 7 0.9787 -2.3243 3.7593 24 14 -0.1304 -0.1125 5.0056 25 1 0.2693 1.3137 5.1129 26 1 -1.4600 -0.2055 4.3508 27 1 -0.2044 -0.7099 6.3632 28 1 -0.3634 0.5757 -0.8512 29 1 -0.3634 0.4493 0.9242 30 1 -0.3633 -1.0251 -0.0730 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.9936 1.5063 -2.1560 34 1 0.5815 2.2523 -1.3680 35 1 5.3846 4.7148 -1.5288 36 1 3.9518 5.1977 -2.4680 37 1 3.9545 5.3708 -0.6965 38 1 3.8901 1.4530 -2.4103 39 1 3.7697 2.8619 -3.4914 40 1 5.2911 2.5287 -2.6298 41 1 3.9879 3.4016 0.7507 42 1 5.2851 2.5487 -0.1254 43 1 4.6314 1.5000 3.3089 44 1 5.2923 -0.0384 3.9128 45 1 6.0519 0.7715 2.5217 46 1 4.4545 -1.6382 4.3530 47 1 3.2232 -2.8519 3.9291 48 1 4.6907 -2.6884 2.9355 49 1 0.2101 -2.7925 4.1211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593628261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:27 Heat of formation + Delta-G solvation = -125.635863 kcal Electronic energy + Delta-G solvation = -31126.232974 eV Core-core repulsion = 27215.201122 eV Total energy + Delta-G solvation = -3911.031852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01600 -38.77941 -37.90834 -36.98529 -36.56771 -35.10609 -34.47234 -32.89485 -30.94093 -29.05147 -28.09053 -27.49143 -26.97028 -26.77037 -24.78758 -22.62759 -22.40725 -20.74806 -19.76184 -18.84697 -18.35920 -18.07985 -17.77920 -17.05171 -16.69520 -16.24650 -15.95664 -15.85403 -15.50145 -15.26165 -14.93671 -14.76213 -14.62130 -14.17378 -13.91954 -13.68790 -13.61919 -13.43541 -13.27981 -13.22806 -13.14083 -12.98522 -12.94048 -12.84683 -12.81382 -12.65990 -12.54202 -12.28458 -12.19915 -12.17172 -12.15292 -11.88128 -11.86195 -11.40783 -11.15664 -11.09262 -10.85909 -10.45853 -9.80614 -9.58306 -8.07020 -6.19064 -0.35761 1.42159 1.46916 1.54901 1.90433 2.45207 2.51621 2.74881 3.23509 3.32842 3.55579 3.71721 3.92136 3.94337 4.03285 4.13475 4.19139 4.30346 4.46533 4.49055 4.60843 4.67696 4.68637 4.69235 4.77034 4.78944 4.83136 4.85640 4.92110 4.93144 4.97814 5.00945 5.08959 5.12668 5.15371 5.24366 5.27337 5.36752 5.44804 5.52370 5.58239 5.68362 5.74715 5.91410 6.09853 6.23650 6.30208 6.89109 7.49978 8.98727 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.005741 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.276844 B = 4876.255799 C = 5650.868912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.161 4.161 3 C 0.134 3.866 4 H 0.076 0.924 5 C 0.058 3.942 6 O -0.376 6.376 7 C 0.098 3.902 8 C -0.132 4.132 9 C -0.180 4.180 10 C 0.089 3.911 11 N -1.001 6.001 12 S 2.786 3.214 13 O -1.000 7.000 14 O -1.009 7.009 15 N -0.999 5.999 16 C 0.093 3.907 17 C 0.266 3.734 18 H 0.043 0.957 19 C -0.137 4.137 20 C -0.518 4.518 21 H 0.060 0.940 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.943 3.057 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.285 1.285 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.021 0.979 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 12.360 -8.771 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.200 4.200 3 C 0.028 3.972 4 H 0.094 0.906 5 C -0.020 4.020 6 O -0.295 6.295 7 C 0.057 3.943 8 C -0.189 4.189 9 C -0.238 4.238 10 C -0.036 4.036 11 N -0.841 5.841 12 S 2.799 3.201 13 O -0.985 6.985 14 O -0.993 6.993 15 N -0.840 5.840 16 C -0.052 4.052 17 C 0.162 3.838 18 H 0.061 0.939 19 C -0.197 4.197 20 C -0.558 4.558 21 H 0.078 0.922 22 C -0.172 4.172 23 N -0.553 5.553 24 Si 0.770 3.230 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.212 1.212 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.040 0.960 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.458 11.822 -9.349 15.717 hybrid contribution -0.887 -0.326 1.234 1.554 sum 3.571 11.496 -8.115 14.518 Atomic orbital electron populations 1.21636 0.93986 1.01818 1.01943 1.22492 0.98069 0.94306 1.05102 1.21665 0.78389 0.97543 0.99600 0.90570 1.23068 0.99047 0.84932 0.94961 1.87949 1.18776 1.28439 1.94359 1.21983 0.81361 0.97888 0.93092 1.21745 1.01581 0.91873 1.03712 1.22432 1.03015 0.99355 0.98955 1.22367 0.97672 0.84544 0.99051 1.58160 1.15851 1.24349 1.85761 1.01612 0.72076 0.73092 0.73336 1.93624 1.73172 1.55744 1.75918 1.93470 1.34532 1.86046 1.85218 1.57667 1.48058 1.54075 1.24220 1.21435 0.92285 0.96332 0.95177 1.18586 0.85111 0.86232 0.93841 0.93911 1.21936 0.98843 0.99486 0.99444 1.21486 1.06395 0.95596 1.32283 0.92157 1.25486 0.99252 0.95354 0.97151 1.70023 1.30050 1.09170 1.46032 0.85743 0.79496 0.79209 0.78601 1.19199 1.20833 1.21170 0.90311 0.93393 0.93313 0.90504 0.90116 0.92319 0.85979 0.89113 0.90647 0.91230 0.94395 0.90177 0.90091 0.89827 0.87970 0.92704 0.90484 0.90749 0.93311 0.91938 0.96020 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.78 71.98 0.70 -3.75 16 2 C -0.16 -6.06 3.76 30.59 0.12 -5.94 16 3 C 0.13 4.34 3.16 44.97 0.14 4.48 16 4 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 5 C 0.06 1.53 5.48 72.08 0.40 1.93 16 6 O -0.38 -9.75 10.23 -148.98 -1.52 -11.27 16 7 C 0.10 2.25 1.11 -10.69 -0.01 2.24 16 8 C -0.13 -2.14 8.85 71.98 0.64 -1.51 16 9 C -0.18 -4.09 7.95 71.98 0.57 -3.52 16 10 C 0.09 2.35 5.40 86.35 0.47 2.82 16 11 N -1.00 -32.88 2.82 -489.37 -1.38 -34.26 16 12 S 2.79 110.04 5.67 -56.49 -0.32 109.72 16 13 O -1.00 -45.17 12.07 -128.00 -1.54 -46.71 16 14 O -1.01 -40.36 15.39 -128.00 -1.97 -42.33 16 15 N -1.00 -40.87 3.12 -520.46 -1.62 -42.50 16 16 C 0.09 3.17 10.10 127.77 1.29 4.46 16 17 C 0.27 12.73 1.73 44.25 0.08 12.81 16 18 H 0.04 2.33 5.20 -2.39 -0.01 2.32 16 19 C -0.14 -6.38 8.90 71.98 0.64 -5.74 16 20 C -0.52 -25.68 7.84 25.60 0.20 -25.48 16 21 H 0.06 2.95 7.72 -2.91 -0.02 2.93 16 22 C 0.03 1.42 5.33 84.65 0.45 1.87 16 23 N -0.91 -49.51 11.74 21.45 0.25 -49.25 16 24 Si 0.94 40.97 29.54 68.60 2.03 43.00 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 28 H 0.08 1.97 6.63 -2.39 -0.02 1.95 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 3.48 3.03 -2.39 -0.01 3.48 16 32 H 0.08 3.15 6.48 -2.39 -0.02 3.13 16 33 H 0.06 1.54 6.38 -2.39 -0.02 1.53 16 34 H 0.12 2.71 6.94 -2.39 -0.02 2.69 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 1.02 6.32 -2.38 -0.02 1.01 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 2.62 6.78 -2.38 -0.02 2.60 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.58 6.19 -2.39 -0.01 2.56 16 45 H 0.07 2.26 7.14 -2.39 -0.02 2.25 16 46 H 0.05 2.07 6.52 -2.39 -0.02 2.06 16 47 H 0.06 3.18 6.52 -2.39 -0.02 3.17 16 48 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.26 13.64 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -61.84 371.00 0.53 -61.31 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.94 Total: 27.64 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.68 Total: -15.34 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -2.75 Total: -126.01 kcal Atomic # 8 Polarization: -95.27 SS G_CDS: -5.04 Total: -100.31 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 110.04 SS G_CDS: -0.32 Total: 109.72 kcal Total: -61.84 0.53 -61.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.330 kcal (2) G-P(sol) polarization free energy of solvation -61.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds