Wall clock time and date at job start Tue Mar 31 2020 17:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 H 1.08995 * 109.67905 * 65.03415 * 3 2 1 5 5 C 1.53296 * 109.68280 * 304.47453 * 3 2 1 6 6 O 1.42960 * 109.22242 * 187.97437 * 5 3 2 7 7 C 1.42959 * 114.16768 * 62.58219 * 6 5 3 8 8 C 1.53007 * 109.51428 * 177.49816 * 7 6 5 9 9 C 1.52997 * 109.55615 * 57.36909 * 7 6 5 10 10 C 1.53298 * 109.22396 * 297.41670 * 7 6 5 11 11 N 1.47154 * 109.68045 * 185.54814 * 3 2 1 12 12 S 1.65602 * 120.98319 * 350.23944 * 11 3 2 13 13 O 1.42098 * 106.39955 * 195.29520 * 12 11 3 14 14 O 1.42104 * 106.40069 * 328.21359 * 12 11 3 15 15 N 1.65596 * 107.21688 * 81.75252 * 12 11 3 16 16 C 1.46506 * 120.00017 * 77.17488 * 15 12 11 17 17 C 1.46500 * 119.99845 * 257.17260 * 15 12 11 18 18 H 1.08994 * 109.47020 * 0.59422 * 17 15 12 19 19 C 1.53007 * 109.47107 * 240.59514 * 17 15 12 20 20 C 1.50699 * 109.46878 * 120.59960 * 17 15 12 21 21 H 1.07994 * 120.00401 * 5.52318 * 20 17 15 22 22 C 1.37884 * 119.99885 * 185.52441 * 20 17 15 23 23 N 1.31518 * 119.99861 * 5.87425 * 22 20 17 24 24 Si 1.86797 * 120.00194 * 185.88189 * 22 20 17 25 25 H 1.48498 * 109.47047 * 94.99133 * 24 22 20 26 26 H 1.48495 * 109.47355 * 214.99542 * 24 22 20 27 27 H 1.48502 * 109.46847 * 334.99424 * 24 22 20 28 28 H 1.08995 * 109.46743 * 296.01699 * 1 2 3 29 29 H 1.09002 * 109.46887 * 176.01974 * 1 2 3 30 30 H 1.09004 * 109.47298 * 56.01537 * 1 2 3 31 31 H 1.08996 * 109.47336 * 119.99855 * 2 1 3 32 32 H 1.08999 * 109.47122 * 240.00320 * 2 1 3 33 33 H 1.08998 * 109.51052 * 307.89720 * 5 3 2 34 34 H 1.08998 * 109.50834 * 68.05115 * 5 3 2 35 35 H 1.08995 * 109.47107 * 179.74950 * 8 7 6 36 36 H 1.09000 * 109.46631 * 299.74600 * 8 7 6 37 37 H 1.08994 * 109.47382 * 59.74270 * 8 7 6 38 38 H 1.08998 * 109.47118 * 300.23068 * 9 7 6 39 39 H 1.09003 * 109.46892 * 60.22463 * 9 7 6 40 40 H 1.08999 * 109.47543 * 180.23297 * 9 7 6 41 41 H 1.08998 * 109.68524 * 292.58167 * 10 7 6 42 42 H 1.08997 * 109.68240 * 172.01941 * 10 7 6 43 43 H 1.09002 * 109.47136 * 89.99598 * 16 15 12 44 44 H 1.09000 * 109.47140 * 209.99756 * 16 15 12 45 45 H 1.09000 * 109.46669 * 330.00038 * 16 15 12 46 46 H 1.08995 * 109.47025 * 184.66683 * 19 17 15 47 47 H 1.09006 * 109.47199 * 304.66992 * 19 17 15 48 48 H 1.09004 * 109.46990 * 64.66697 * 19 17 15 49 49 H 0.96995 * 119.99797 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7539 1.9330 0.9304 5 6 1.4418 2.2017 -1.1899 6 8 2.0635 3.4851 -1.2901 7 6 3.4692 3.4361 -1.5456 8 6 4.0116 4.8591 -1.6940 9 6 3.7285 2.6535 -2.8344 10 6 4.1713 2.7403 -0.3739 11 7 3.5054 1.4501 -0.1340 12 16 4.3794 0.0483 -0.0176 13 8 5.7339 0.4345 0.1702 14 8 3.6766 -0.7884 0.8909 15 7 4.3063 -0.6988 -1.4936 16 6 5.1328 -0.2139 -2.6018 17 6 3.4152 -1.8447 -1.6912 18 1 2.8779 -2.0510 -0.7656 19 6 4.2411 -3.0709 -2.0857 20 6 2.4283 -1.5306 -2.7859 21 1 2.5165 -0.6109 -3.3450 22 6 1.4124 -2.4175 -3.0736 23 7 1.2342 -3.4802 -2.3196 24 14 0.2896 -2.1096 -4.5343 25 1 0.7961 -2.8560 -5.7139 26 1 -1.0838 -2.5711 -4.2089 27 1 0.2639 -0.6569 -4.8413 28 1 -0.3632 0.4508 0.9235 29 1 -0.3633 -1.0252 -0.0713 30 1 -0.3634 0.5744 -0.8521 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.6184 1.6390 -2.1066 34 1 0.3695 2.3272 -1.0397 35 1 5.0841 4.8212 -1.8844 36 1 3.5119 5.3533 -2.5272 37 1 3.8250 5.4167 -0.7762 38 1 3.3403 1.6405 -2.7287 39 1 3.2289 3.1489 -3.6670 40 1 4.8008 2.6134 -3.0258 41 1 4.0998 3.3619 0.5185 42 1 5.2193 2.5719 -0.6217 43 1 6.0929 -0.7299 -2.5919 44 1 4.6251 -0.4092 -3.5463 45 1 5.2955 0.8583 -2.4916 46 1 3.5727 -3.9012 -2.3132 47 1 4.8421 -2.8369 -2.9645 48 1 4.8969 -3.3481 -1.2603 49 1 0.5194 -4.1039 -2.5217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593628263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:33 Heat of formation + Delta-G solvation = -106.214895 kcal Electronic energy + Delta-G solvation = -31751.135394 eV Core-core repulsion = 27840.945699 eV Total energy + Delta-G solvation = -3910.189695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.84368 -37.17835 -36.27504 -35.44482 -35.14183 -33.95613 -32.65370 -31.61218 -29.29706 -27.78841 -27.05327 -25.80248 -25.50948 -25.24253 -23.59507 -21.11648 -20.79250 -19.45159 -18.20295 -17.39717 -16.69379 -16.48933 -16.26323 -15.78434 -15.08063 -14.93986 -14.71892 -14.39149 -14.30702 -13.60835 -13.53530 -13.27764 -12.93220 -12.71100 -12.47796 -12.36554 -12.26349 -12.17682 -12.02977 -11.74175 -11.65624 -11.61149 -11.50981 -11.33037 -11.30878 -11.13472 -11.02564 -10.94439 -10.83859 -10.76507 -10.48703 -10.40076 -10.14226 -9.90870 -9.69158 -9.44309 -9.27058 -8.55057 -8.43363 -8.02200 -6.18704 -4.24735 1.16547 3.18669 3.27542 3.28085 3.35912 3.86352 4.03737 4.28854 4.69424 4.82735 4.92283 5.07564 5.12119 5.14202 5.30671 5.41345 5.51999 5.52668 5.60967 5.69952 5.71586 5.78841 5.87067 5.90259 6.00731 6.03437 6.05647 6.11022 6.15195 6.21259 6.27588 6.45498 6.50465 6.56436 6.66930 6.73879 6.77083 6.92937 6.95802 7.04669 7.26536 7.40460 7.41120 7.55458 7.70418 7.88729 8.15720 8.77860 9.40329 10.87382 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.006792 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.665171 B = 4121.525112 C = 4741.225574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.210 4.210 3 C 0.136 3.864 4 H 0.071 0.929 5 C 0.048 3.952 6 O -0.375 6.375 7 C 0.100 3.900 8 C -0.136 4.136 9 C -0.190 4.190 10 C 0.100 3.900 11 N -1.006 6.006 12 S 2.779 3.221 13 O -0.999 6.999 14 O -0.972 6.972 15 N -0.991 5.991 16 C 0.100 3.900 17 C 0.258 3.742 18 H 0.077 0.923 19 C -0.141 4.141 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.073 3.927 23 N -0.878 5.878 24 Si 0.887 3.113 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.014 0.986 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 11.599 0.533 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.248 4.248 3 C 0.030 3.970 4 H 0.089 0.911 5 C -0.030 4.030 6 O -0.294 6.294 7 C 0.059 3.941 8 C -0.193 4.193 9 C -0.247 4.247 10 C -0.026 4.026 11 N -0.845 5.845 12 S 2.791 3.209 13 O -0.983 6.983 14 O -0.956 6.956 15 N -0.833 5.833 16 C -0.046 4.046 17 C 0.155 3.845 18 H 0.094 0.906 19 C -0.201 4.201 20 C -0.566 4.566 21 H 0.081 0.919 22 C -0.132 4.132 23 N -0.515 5.515 24 Si 0.715 3.285 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.033 0.967 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.044 11.284 1.380 11.769 hybrid contribution -0.778 -0.002 -1.284 1.501 sum 2.265 11.283 0.096 11.508 Atomic orbital electron populations 1.21558 0.95108 1.02371 1.00020 1.23237 0.97908 0.93971 1.09655 1.21590 0.78242 0.98715 0.98445 0.91087 1.23162 0.97067 0.84363 0.98387 1.87922 1.20302 1.28721 1.92430 1.21791 0.82585 0.95942 0.93807 1.21723 1.00679 0.94112 1.02830 1.22671 1.02251 1.02610 0.97179 1.22037 0.96964 0.85126 0.98480 1.58457 1.16244 1.21625 1.88138 1.02014 0.72465 0.72281 0.74177 1.93514 1.34870 1.83752 1.86188 1.93524 1.73058 1.66566 1.62433 1.57776 1.54337 1.43832 1.27378 1.21375 0.94177 0.96870 0.92198 1.18934 0.86355 0.80031 0.99154 0.90570 1.22019 0.99008 1.01009 0.98029 1.21252 1.11338 1.05625 1.18385 0.91926 1.24874 0.96978 0.95154 0.96163 1.69934 1.31808 1.12626 1.37133 0.86663 0.80191 0.78585 0.83092 1.20741 1.21138 1.19792 0.93941 0.91747 0.93280 0.86566 0.85447 0.91092 0.88179 0.91022 0.91628 0.91839 0.89961 0.91777 0.91499 0.90988 0.88760 0.93889 0.90091 0.93266 0.90245 0.94746 0.96686 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.58 37.16 0.36 -1.85 16 2 C -0.21 -3.94 3.76 -26.73 -0.10 -4.04 16 3 C 0.14 2.24 3.24 -67.42 -0.22 2.02 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.05 0.74 5.15 37.31 0.19 0.93 16 6 O -0.37 -5.60 10.23 -35.23 -0.36 -5.96 16 7 C 0.10 1.32 1.11 -90.46 -0.10 1.21 16 8 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16 9 C -0.19 -2.52 6.94 37.16 0.26 -2.26 16 10 C 0.10 1.42 5.28 -3.53 -0.02 1.41 16 11 N -1.01 -16.87 2.92 -106.02 -0.31 -17.18 16 12 S 2.78 54.82 5.41 -107.50 -0.58 54.24 16 13 O -1.00 -20.73 16.21 -57.17 -0.93 -21.66 16 14 O -0.97 -21.61 12.53 -57.17 -0.72 -22.33 16 15 N -0.99 -19.55 2.98 -115.85 -0.34 -19.90 16 16 C 0.10 1.69 8.21 59.85 0.49 2.18 16 17 C 0.26 5.84 1.48 -69.08 -0.10 5.74 16 18 H 0.08 1.93 5.47 -51.93 -0.28 1.65 16 19 C -0.14 -3.15 9.16 37.16 0.34 -2.81 16 20 C -0.53 -12.28 6.26 -34.44 -0.22 -12.50 16 21 H 0.06 1.43 7.10 -52.49 -0.37 1.06 16 22 C 0.07 1.77 5.22 -17.82 -0.09 1.67 16 23 N -0.88 -22.61 11.99 55.43 0.66 -21.95 16 24 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.75 6.33 -51.93 -0.33 0.43 16 31 H 0.12 2.40 5.40 -51.95 -0.28 2.12 16 32 H 0.13 2.68 2.84 -51.93 -0.15 2.53 16 33 H 0.07 1.19 6.25 -51.93 -0.32 0.87 16 34 H 0.10 1.40 6.78 -51.93 -0.35 1.04 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.27 4.90 -51.93 -0.25 1.02 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.29 7.02 -51.93 -0.36 0.93 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.37 6.87 -51.93 -0.36 1.01 16 45 H 0.05 0.72 5.27 -51.93 -0.27 0.44 16 46 H 0.08 1.93 6.67 -51.93 -0.35 1.58 16 47 H 0.03 0.71 7.54 -51.93 -0.39 0.32 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -27.78 362.48 -8.82 -36.60 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.80 Total: 7.74 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 1.12 Total: -9.36 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.01 Total: -59.03 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.00 Total: -49.95 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: 54.82 SS G_CDS: -0.58 Total: 54.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.78 -8.82 -36.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.620 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds