Wall clock time and date at job start Tue Mar 31 2020 17:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 H 1.08995 * 109.67905 * 65.03415 * 3 2 1 5 5 C 1.53296 * 109.68280 * 304.47453 * 3 2 1 6 6 O 1.42960 * 109.22242 * 187.97437 * 5 3 2 7 7 C 1.42959 * 114.16768 * 62.58219 * 6 5 3 8 8 C 1.53007 * 109.51428 * 177.49816 * 7 6 5 9 9 C 1.52997 * 109.55615 * 57.36909 * 7 6 5 10 10 C 1.53298 * 109.22396 * 297.41670 * 7 6 5 11 11 N 1.47154 * 109.68045 * 185.54814 * 3 2 1 12 12 S 1.65602 * 120.98319 * 350.23944 * 11 3 2 13 13 O 1.42098 * 106.39955 * 195.29520 * 12 11 3 14 14 O 1.42104 * 106.40069 * 328.21359 * 12 11 3 15 15 N 1.65596 * 107.21688 * 81.75252 * 12 11 3 16 16 C 1.46506 * 120.00017 * 77.17488 * 15 12 11 17 17 C 1.46500 * 119.99845 * 257.17260 * 15 12 11 18 18 H 1.08994 * 109.47020 * 0.59422 * 17 15 12 19 19 C 1.53007 * 109.47107 * 240.59514 * 17 15 12 20 20 C 1.50699 * 109.46878 * 120.59960 * 17 15 12 21 21 H 1.07994 * 120.00401 * 5.52318 * 20 17 15 22 22 C 1.37884 * 119.99885 * 185.52441 * 20 17 15 23 23 N 1.31518 * 119.99861 * 5.87425 * 22 20 17 24 24 Si 1.86797 * 120.00194 * 185.88189 * 22 20 17 25 25 H 1.48498 * 109.47047 * 94.99133 * 24 22 20 26 26 H 1.48495 * 109.47355 * 214.99542 * 24 22 20 27 27 H 1.48502 * 109.46847 * 334.99424 * 24 22 20 28 28 H 1.08995 * 109.46743 * 296.01699 * 1 2 3 29 29 H 1.09002 * 109.46887 * 176.01974 * 1 2 3 30 30 H 1.09004 * 109.47298 * 56.01537 * 1 2 3 31 31 H 1.08996 * 109.47336 * 119.99855 * 2 1 3 32 32 H 1.08999 * 109.47122 * 240.00320 * 2 1 3 33 33 H 1.08998 * 109.51052 * 307.89720 * 5 3 2 34 34 H 1.08998 * 109.50834 * 68.05115 * 5 3 2 35 35 H 1.08995 * 109.47107 * 179.74950 * 8 7 6 36 36 H 1.09000 * 109.46631 * 299.74600 * 8 7 6 37 37 H 1.08994 * 109.47382 * 59.74270 * 8 7 6 38 38 H 1.08998 * 109.47118 * 300.23068 * 9 7 6 39 39 H 1.09003 * 109.46892 * 60.22463 * 9 7 6 40 40 H 1.08999 * 109.47543 * 180.23297 * 9 7 6 41 41 H 1.08998 * 109.68524 * 292.58167 * 10 7 6 42 42 H 1.08997 * 109.68240 * 172.01941 * 10 7 6 43 43 H 1.09002 * 109.47136 * 89.99598 * 16 15 12 44 44 H 1.09000 * 109.47140 * 209.99756 * 16 15 12 45 45 H 1.09000 * 109.46669 * 330.00038 * 16 15 12 46 46 H 1.08995 * 109.47025 * 184.66683 * 19 17 15 47 47 H 1.09006 * 109.47199 * 304.66992 * 19 17 15 48 48 H 1.09004 * 109.46990 * 64.66697 * 19 17 15 49 49 H 0.96995 * 119.99797 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7539 1.9330 0.9304 5 6 1.4418 2.2017 -1.1899 6 8 2.0635 3.4851 -1.2901 7 6 3.4692 3.4361 -1.5456 8 6 4.0116 4.8591 -1.6940 9 6 3.7285 2.6535 -2.8344 10 6 4.1713 2.7403 -0.3739 11 7 3.5054 1.4501 -0.1340 12 16 4.3794 0.0483 -0.0176 13 8 5.7339 0.4345 0.1702 14 8 3.6766 -0.7884 0.8909 15 7 4.3063 -0.6988 -1.4936 16 6 5.1328 -0.2139 -2.6018 17 6 3.4152 -1.8447 -1.6912 18 1 2.8779 -2.0510 -0.7656 19 6 4.2411 -3.0709 -2.0857 20 6 2.4283 -1.5306 -2.7859 21 1 2.5165 -0.6109 -3.3450 22 6 1.4124 -2.4175 -3.0736 23 7 1.2342 -3.4802 -2.3196 24 14 0.2896 -2.1096 -4.5343 25 1 0.7961 -2.8560 -5.7139 26 1 -1.0838 -2.5711 -4.2089 27 1 0.2639 -0.6569 -4.8413 28 1 -0.3632 0.4508 0.9235 29 1 -0.3633 -1.0252 -0.0713 30 1 -0.3634 0.5744 -0.8521 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.6184 1.6390 -2.1066 34 1 0.3695 2.3272 -1.0397 35 1 5.0841 4.8212 -1.8844 36 1 3.5119 5.3533 -2.5272 37 1 3.8250 5.4167 -0.7762 38 1 3.3403 1.6405 -2.7287 39 1 3.2289 3.1489 -3.6670 40 1 4.8008 2.6134 -3.0258 41 1 4.0998 3.3619 0.5185 42 1 5.2193 2.5719 -0.6217 43 1 6.0929 -0.7299 -2.5919 44 1 4.6251 -0.4092 -3.5463 45 1 5.2955 0.8583 -2.4916 46 1 3.5727 -3.9012 -2.3132 47 1 4.8421 -2.8369 -2.9645 48 1 4.8969 -3.3481 -1.2603 49 1 0.5194 -4.1039 -2.5217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593628263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:33 Heat of formation + Delta-G solvation = -124.299439 kcal Electronic energy + Delta-G solvation = -31751.919599 eV Core-core repulsion = 27840.945699 eV Total energy + Delta-G solvation = -3910.973900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01108 -38.76547 -37.92374 -36.97201 -36.55760 -35.13052 -34.44040 -32.83906 -31.02032 -28.94805 -28.10647 -27.30458 -26.92983 -26.84819 -24.84826 -22.63379 -22.35370 -20.62893 -19.69911 -18.92310 -18.25296 -18.03854 -17.68161 -17.15556 -16.55994 -16.29368 -16.02560 -15.81105 -15.55764 -15.19900 -14.82581 -14.78087 -14.57491 -13.99767 -13.77825 -13.69180 -13.61285 -13.49842 -13.24452 -13.18993 -13.12330 -13.04570 -12.93398 -12.77131 -12.65986 -12.64672 -12.49199 -12.36157 -12.20575 -12.18483 -12.08698 -11.95049 -11.82652 -11.20255 -11.08379 -11.02849 -10.81350 -10.42907 -9.71601 -9.61477 -8.05874 -6.15334 -0.36762 1.44803 1.49837 1.55757 1.90276 2.46169 2.52526 2.79090 3.24803 3.33347 3.58237 3.76133 3.99720 3.99978 4.04590 4.15450 4.22965 4.32650 4.53059 4.54412 4.65505 4.66660 4.71717 4.76560 4.78462 4.82498 4.86584 4.90591 4.94348 4.96668 5.01588 5.06555 5.12323 5.16364 5.25751 5.31643 5.36706 5.44735 5.48897 5.55211 5.63513 5.74224 5.78429 5.91900 6.09847 6.28927 6.32039 6.92035 7.51731 9.00370 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.006792 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.665171 B = 4121.525112 C = 4741.225574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.211 4.211 3 C 0.139 3.861 4 H 0.085 0.915 5 C 0.055 3.945 6 O -0.378 6.378 7 C 0.096 3.904 8 C -0.131 4.131 9 C -0.191 4.191 10 C 0.092 3.908 11 N -1.002 6.002 12 S 2.786 3.214 13 O -1.011 7.011 14 O -1.003 7.003 15 N -0.994 5.994 16 C 0.095 3.905 17 C 0.266 3.734 18 H 0.046 0.954 19 C -0.137 4.137 20 C -0.514 4.514 21 H 0.068 0.932 22 C 0.032 3.968 23 N -0.910 5.910 24 Si 0.939 3.061 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.263 1.263 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.048 0.952 48 H 0.017 0.983 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 14.338 -0.396 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.249 4.249 3 C 0.034 3.966 4 H 0.103 0.897 5 C -0.023 4.023 6 O -0.297 6.297 7 C 0.056 3.944 8 C -0.189 4.189 9 C -0.248 4.248 10 C -0.033 4.033 11 N -0.843 5.843 12 S 2.799 3.201 13 O -0.995 6.995 14 O -0.987 6.987 15 N -0.836 5.836 16 C -0.051 4.051 17 C 0.162 3.838 18 H 0.063 0.937 19 C -0.197 4.197 20 C -0.554 4.554 21 H 0.086 0.914 22 C -0.169 4.169 23 N -0.549 5.549 24 Si 0.766 3.234 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.187 1.187 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.036 0.964 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.390 14.043 0.438 14.453 hybrid contribution -0.818 -0.803 -0.952 1.490 sum 2.572 13.240 -0.514 13.497 Atomic orbital electron populations 1.21523 0.93712 1.01469 1.01934 1.23095 0.99279 0.95221 1.07345 1.21597 0.77934 0.97320 0.99785 0.89703 1.23058 0.97922 0.84386 0.96913 1.87932 1.21348 1.28072 1.92354 1.22006 0.81666 0.97687 0.93079 1.21744 1.01812 0.91909 1.03435 1.22675 1.03343 1.01246 0.97529 1.22357 0.97250 0.83905 0.99837 1.58218 1.16311 1.21713 1.88017 1.01601 0.72140 0.72512 0.73856 1.93490 1.35647 1.83995 1.86333 1.93502 1.73577 1.67974 1.63634 1.57646 1.54326 1.43454 1.28160 1.21569 0.93915 0.98401 0.91193 1.18596 0.86599 0.81052 0.97538 0.93678 1.21941 0.98700 1.00318 0.98706 1.21387 1.10909 1.05284 1.17794 0.91366 1.25451 0.98318 0.95130 0.97982 1.70053 1.32526 1.13649 1.38659 0.85842 0.78351 0.78765 0.80484 1.20980 1.21751 1.18741 0.91471 0.93991 0.91932 0.88995 0.87635 0.92641 0.86635 0.89032 0.91090 0.91220 0.92347 0.91159 0.89804 0.89475 0.88139 0.93173 0.90131 0.90925 0.92444 0.93318 0.96419 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.58 71.98 0.69 -3.54 16 2 C -0.21 -7.98 3.76 30.60 0.11 -7.86 16 3 C 0.14 4.41 3.24 44.97 0.15 4.55 16 4 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 5 C 0.06 1.59 5.15 72.08 0.37 1.96 16 6 O -0.38 -10.21 10.23 -148.98 -1.52 -11.73 16 7 C 0.10 2.24 1.11 -10.69 -0.01 2.23 16 8 C -0.13 -2.18 8.85 71.98 0.64 -1.54 16 9 C -0.19 -4.53 6.94 71.98 0.50 -4.03 16 10 C 0.09 2.36 5.28 86.35 0.46 2.82 16 11 N -1.00 -32.26 2.92 -489.35 -1.43 -33.69 16 12 S 2.79 109.24 5.41 -56.49 -0.31 108.94 16 13 O -1.01 -40.92 16.21 -128.00 -2.07 -43.00 16 14 O -1.00 -45.80 12.53 -128.00 -1.60 -47.40 16 15 N -0.99 -38.94 2.98 -520.43 -1.55 -40.49 16 16 C 0.09 3.05 8.21 127.77 1.05 4.10 16 17 C 0.27 12.24 1.48 44.25 0.07 12.31 16 18 H 0.05 2.39 5.47 -2.39 -0.01 2.38 16 19 C -0.14 -6.22 9.16 71.98 0.66 -5.56 16 20 C -0.51 -24.03 6.26 25.60 0.16 -23.87 16 21 H 0.07 3.07 7.10 -2.91 -0.02 3.05 16 22 C 0.03 1.58 5.22 84.66 0.44 2.02 16 23 N -0.91 -48.16 11.99 21.45 0.26 -47.90 16 24 Si 0.94 39.55 29.54 68.60 2.03 41.57 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.85 6.33 -2.39 -0.02 1.84 16 31 H 0.09 3.94 5.40 -2.74 -0.01 3.93 16 32 H 0.11 4.51 2.84 -2.39 -0.01 4.51 16 33 H 0.06 1.79 6.25 -2.39 -0.01 1.77 16 34 H 0.12 2.93 6.78 -2.39 -0.02 2.91 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.69 4.90 -2.39 -0.01 1.68 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.65 6.96 -2.39 -0.02 1.64 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.10 2.47 7.02 -2.39 -0.02 2.45 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 2.60 6.87 -2.39 -0.02 2.58 16 45 H 0.07 1.96 5.27 -2.39 -0.01 1.95 16 46 H 0.06 2.86 6.67 -2.39 -0.02 2.84 16 47 H 0.05 2.01 7.54 -2.38 -0.02 1.99 16 48 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -60.05 362.48 0.02 -60.03 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.95 Total: 30.09 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 5.28 Total: -16.41 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -2.72 Total: -122.08 kcal Atomic # 8 Polarization: -96.93 SS G_CDS: -5.20 Total: -102.13 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Atomic # 16 Polarization: 109.24 SS G_CDS: -0.31 Total: 108.94 kcal Total: -60.05 0.02 -60.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.268 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds