Wall clock time and date at job start Tue Mar 31 2020 17:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 H 1.08998 * 109.51208 * 304.90265 * 3 2 1 5 5 C 1.52883 * 109.58100 * 184.88317 * 3 2 1 6 6 N 1.47153 * 108.60774 * 187.92232 * 5 3 2 7 7 S 1.65592 * 120.98261 * 230.50101 * 6 5 3 8 8 O 1.42104 * 106.40406 * 157.08883 * 7 6 5 9 9 O 1.42103 * 106.40258 * 24.17387 * 7 6 5 10 10 N 1.65595 * 107.21878 * 270.62752 * 7 6 5 11 11 C 1.46504 * 119.99659 * 94.29917 * 10 7 6 12 12 C 1.53003 * 109.46915 * 264.99897 * 11 10 7 13 13 C 1.46499 * 120.00444 * 274.29503 * 10 7 6 14 14 C 1.50697 * 109.47517 * 263.60893 * 13 10 7 15 15 H 1.07997 * 120.00027 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00092 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99959 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47010 * 59.99631 * 18 16 14 20 20 H 1.48497 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47002 * 299.99800 * 18 16 14 22 22 C 1.47157 * 118.03282 * 50.22824 * 6 5 3 23 23 H 1.09002 * 109.68095 * 69.43840 * 22 6 5 24 24 C 1.52998 * 109.68019 * 189.95575 * 22 6 5 25 25 C 1.52997 * 109.46910 * 184.94673 * 24 22 6 26 26 C 1.53302 * 108.38456 * 309.71503 * 22 6 5 27 27 O 1.42960 * 109.51217 * 65.00610 * 3 2 1 28 28 H 1.08997 * 109.46853 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46686 * 299.99914 * 1 2 3 30 30 H 1.09001 * 109.47250 * 59.99505 * 1 2 3 31 31 H 1.08998 * 109.47031 * 240.00498 * 2 1 3 32 32 H 1.08997 * 109.47688 * 120.00253 * 2 1 3 33 33 H 1.09001 * 109.61754 * 68.10581 * 5 3 2 34 34 H 1.09001 * 109.52532 * 307.68927 * 5 3 2 35 35 H 1.09002 * 109.47109 * 145.00235 * 11 10 7 36 36 H 1.08996 * 109.47410 * 24.99863 * 11 10 7 37 37 H 1.08996 * 109.47054 * 300.00184 * 12 11 10 38 38 H 1.08999 * 109.46790 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46956 * 60.00244 * 12 11 10 40 40 H 1.09006 * 109.46728 * 23.61077 * 13 10 7 41 41 H 1.08998 * 109.47297 * 143.60192 * 13 10 7 42 42 H 0.96998 * 119.99608 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.47242 * 304.94588 * 24 22 6 44 44 H 1.09003 * 109.47051 * 64.94710 * 24 22 6 45 45 H 1.09004 * 109.47259 * 64.52281 * 25 24 22 46 46 H 1.09009 * 109.47200 * 184.51734 * 25 24 22 47 47 H 1.09002 * 109.47414 * 304.51741 * 25 24 22 48 48 H 1.08993 * 109.51263 * 172.22524 * 26 22 6 49 49 H 1.08996 * 109.50946 * 292.33016 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 -0.8426 5 6 3.5639 1.4472 -0.1226 6 7 4.0463 2.8240 0.0707 7 16 5.0886 3.5217 -1.0105 8 8 4.9343 4.9270 -0.8669 9 8 4.9019 2.8414 -2.2441 10 7 6.6260 3.1663 -0.5084 11 6 7.3250 2.0017 -1.0573 12 6 7.1352 0.8055 -0.1224 13 6 7.2873 4.0166 0.4846 14 6 8.1665 5.0189 -0.2178 15 1 8.2270 5.0220 -1.2960 16 6 8.8944 5.9313 0.5162 17 7 8.8211 5.9271 1.8293 18 14 9.9847 7.1732 -0.3545 19 1 9.1554 8.0157 -1.2533 20 1 10.6549 8.0351 0.6521 21 1 11.0101 6.4566 -1.1545 22 6 3.5702 3.5645 1.2499 23 1 3.9997 3.1315 2.1533 24 6 3.9820 5.0336 1.1365 25 6 3.5937 5.7724 2.4188 26 6 2.0418 3.4584 1.3027 27 8 1.6624 2.0825 1.2213 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8525 1.0927 -1.1121 34 1 3.9928 0.7975 0.6403 35 1 8.3878 2.2258 -1.1493 36 1 6.9177 1.7632 -2.0398 37 1 7.5425 1.0441 0.8601 38 1 7.6556 -0.0608 -0.5306 39 1 6.0724 0.5814 -0.0304 40 1 6.5343 4.5422 1.0719 41 1 7.8962 3.3985 1.1444 42 1 9.3329 6.5692 2.3456 43 1 5.0604 5.0986 0.9922 44 1 3.4735 5.4890 0.2867 45 1 4.1627 5.3696 3.2568 46 1 3.8137 6.8342 2.3072 47 1 2.5281 5.6399 2.6061 48 1 1.6797 3.8811 2.2399 49 1 1.6097 4.0062 0.4653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593629468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:37 Heat of formation + Delta-G solvation = -111.382443 kcal Electronic energy + Delta-G solvation = -30276.236960 eV Core-core repulsion = 26365.823183 eV Total energy + Delta-G solvation = -3910.413777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.65325 -37.19392 -36.12450 -35.60712 -35.10144 -34.15294 -32.70839 -32.49912 -30.00909 -28.89238 -26.74670 -26.59859 -24.81474 -23.18279 -22.57841 -21.68103 -21.33080 -20.86676 -18.30515 -17.22295 -16.92668 -16.65802 -16.31936 -15.94655 -15.38006 -15.00290 -14.71593 -14.59310 -14.35753 -13.84893 -13.79656 -13.55860 -13.25581 -13.15712 -12.94883 -12.87059 -12.41507 -12.15071 -12.05932 -11.94147 -11.78489 -11.67088 -11.60802 -11.46556 -11.13249 -11.11230 -11.03028 -10.97822 -10.93518 -10.67947 -10.54608 -10.45567 -10.23671 -10.08801 -9.87616 -9.77331 -9.44008 -8.61753 -8.44204 -8.07418 -6.08458 -4.12117 1.14590 3.32024 3.35653 3.36561 3.40873 3.69171 4.02471 4.42627 4.53624 4.80424 4.82219 4.93040 5.00266 5.05045 5.21102 5.25492 5.26591 5.35959 5.40684 5.45076 5.54053 5.60502 5.65769 5.70061 5.72675 5.77601 5.78455 5.80452 5.91762 5.98563 5.99781 6.05607 6.16018 6.24807 6.32892 6.43512 6.55877 6.57510 6.62027 6.79321 6.87317 7.16566 7.30469 7.46010 7.60500 7.89473 8.18479 8.90001 9.52907 10.99712 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.004491 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.022261 B = 6232.523482 C = 7060.753286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.061 0.939 5 C 0.092 3.908 6 N -1.010 6.010 7 S 2.773 3.227 8 O -0.956 6.956 9 O -1.000 7.000 10 N -0.990 5.990 11 C 0.117 3.883 12 C -0.171 4.171 13 C 0.255 3.745 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.124 3.876 23 H 0.080 0.920 24 C -0.156 4.156 25 C -0.148 4.148 26 C 0.057 3.943 27 O -0.375 6.375 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.104 0.896 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 -10.643 -0.057 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.020 3.980 4 H 0.079 0.921 5 C -0.034 4.034 6 N -0.848 5.848 7 S 2.784 3.216 8 O -0.939 6.939 9 O -0.984 6.984 10 N -0.831 5.831 11 C -0.010 4.010 12 C -0.230 4.230 13 C 0.133 3.867 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.018 3.982 23 H 0.098 0.902 24 C -0.194 4.194 25 C -0.206 4.206 26 C -0.022 4.022 27 O -0.294 6.294 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.122 0.878 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.268 -10.128 -0.527 16.701 hybrid contribution 1.023 0.646 -0.167 1.222 sum -12.245 -9.482 -0.694 15.503 Atomic orbital electron populations 1.21697 0.95112 1.01421 1.02320 1.21520 0.96856 0.93962 1.02999 1.22385 0.93439 0.94414 0.87718 0.92065 1.21982 0.95035 0.83356 1.03057 1.58574 1.62414 1.23123 1.40690 1.02327 0.72679 0.73922 0.72683 1.93762 1.85319 1.29200 1.85636 1.93481 1.86261 1.76821 1.41856 1.57770 1.30416 1.37423 1.57519 1.21141 0.99562 0.84414 0.95844 1.22261 1.01133 0.98214 1.01363 1.19159 0.93153 0.88248 0.86150 1.21433 1.26027 1.15646 0.93631 0.92277 1.24904 0.96819 0.97297 0.94827 1.69904 1.41842 1.36816 1.04792 0.86603 0.80532 0.81260 0.79339 1.20018 1.21201 1.20233 1.21772 0.94899 0.93208 0.88331 0.90240 1.22727 1.06535 0.91358 0.98774 1.21797 1.00040 1.01099 0.97639 1.23051 0.93878 0.82618 1.02622 1.87901 1.79467 1.24037 1.37975 0.92782 0.91912 0.92947 0.90336 0.90827 0.88505 0.90893 0.89693 0.90721 0.91945 0.92202 0.93448 0.94022 0.94858 0.92653 0.87035 0.89176 0.92644 0.92061 0.93517 0.87774 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.08 5.64 -26.73 -0.15 -1.23 16 3 C 0.08 0.96 2.76 -26.79 -0.07 0.89 16 4 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 5 C 0.09 1.22 5.12 -3.75 -0.02 1.20 16 6 N -1.01 -16.13 3.40 -106.26 -0.36 -16.49 16 7 S 2.77 54.84 5.86 -107.50 -0.63 54.21 16 8 O -0.96 -21.53 11.96 -57.17 -0.68 -22.21 16 9 O -1.00 -20.66 15.25 -57.17 -0.87 -21.53 16 10 N -0.99 -20.23 2.83 -115.66 -0.33 -20.56 16 11 C 0.12 2.04 6.38 -4.04 -0.03 2.02 16 12 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 13 C 0.25 6.15 5.11 -5.20 -0.03 6.12 16 14 C -0.53 -14.42 9.37 -34.44 -0.32 -14.74 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.12 1.87 3.16 -67.42 -0.21 1.66 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 24 C -0.16 -2.68 3.70 -26.73 -0.10 -2.78 16 25 C -0.15 -2.13 9.79 37.16 0.36 -1.77 16 26 C 0.06 0.72 5.86 37.31 0.22 0.94 16 27 O -0.38 -4.88 9.92 -35.23 -0.35 -5.23 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.27 6.96 -51.93 -0.36 0.90 16 34 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 35 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 36 H 0.07 1.25 6.88 -51.93 -0.36 0.89 16 37 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.62 6.69 -51.93 -0.35 0.27 16 40 H 0.04 1.05 5.03 -51.93 -0.26 0.79 16 41 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.11 2.35 3.26 -51.93 -0.17 2.18 16 44 H 0.09 1.62 6.71 -51.93 -0.35 1.27 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 47 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16 48 H 0.10 1.13 6.92 -51.93 -0.36 0.77 16 49 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -31.10 382.16 -9.84 -40.94 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.39 Total: 2.21 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 0.30 Total: -8.99 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.05 Total: -61.64 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -1.91 Total: -48.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 54.84 SS G_CDS: -0.63 Total: 54.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.10 -9.84 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.447 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds