Wall clock time and date at job start Tue Mar 31 2020 17:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 H 1.08998 * 109.51208 * 304.90265 * 3 2 1 5 5 C 1.52883 * 109.58100 * 184.88317 * 3 2 1 6 6 N 1.47153 * 108.60774 * 187.92232 * 5 3 2 7 7 S 1.65592 * 120.98261 * 230.50101 * 6 5 3 8 8 O 1.42104 * 106.40406 * 157.08883 * 7 6 5 9 9 O 1.42103 * 106.40258 * 24.17387 * 7 6 5 10 10 N 1.65595 * 107.21878 * 270.62752 * 7 6 5 11 11 C 1.46504 * 119.99659 * 94.29917 * 10 7 6 12 12 C 1.53003 * 109.46915 * 264.99897 * 11 10 7 13 13 C 1.46499 * 120.00444 * 274.29503 * 10 7 6 14 14 C 1.50697 * 109.47517 * 263.60893 * 13 10 7 15 15 H 1.07997 * 120.00027 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00092 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99959 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47010 * 59.99631 * 18 16 14 20 20 H 1.48497 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47002 * 299.99800 * 18 16 14 22 22 C 1.47157 * 118.03282 * 50.22824 * 6 5 3 23 23 H 1.09002 * 109.68095 * 69.43840 * 22 6 5 24 24 C 1.52998 * 109.68019 * 189.95575 * 22 6 5 25 25 C 1.52997 * 109.46910 * 184.94673 * 24 22 6 26 26 C 1.53302 * 108.38456 * 309.71503 * 22 6 5 27 27 O 1.42960 * 109.51217 * 65.00610 * 3 2 1 28 28 H 1.08997 * 109.46853 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46686 * 299.99914 * 1 2 3 30 30 H 1.09001 * 109.47250 * 59.99505 * 1 2 3 31 31 H 1.08998 * 109.47031 * 240.00498 * 2 1 3 32 32 H 1.08997 * 109.47688 * 120.00253 * 2 1 3 33 33 H 1.09001 * 109.61754 * 68.10581 * 5 3 2 34 34 H 1.09001 * 109.52532 * 307.68927 * 5 3 2 35 35 H 1.09002 * 109.47109 * 145.00235 * 11 10 7 36 36 H 1.08996 * 109.47410 * 24.99863 * 11 10 7 37 37 H 1.08996 * 109.47054 * 300.00184 * 12 11 10 38 38 H 1.08999 * 109.46790 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46956 * 60.00244 * 12 11 10 40 40 H 1.09006 * 109.46728 * 23.61077 * 13 10 7 41 41 H 1.08998 * 109.47297 * 143.60192 * 13 10 7 42 42 H 0.96998 * 119.99608 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.47242 * 304.94588 * 24 22 6 44 44 H 1.09003 * 109.47051 * 64.94710 * 24 22 6 45 45 H 1.09004 * 109.47259 * 64.52281 * 25 24 22 46 46 H 1.09009 * 109.47200 * 184.51734 * 25 24 22 47 47 H 1.09002 * 109.47414 * 304.51741 * 25 24 22 48 48 H 1.08993 * 109.51263 * 172.22524 * 26 22 6 49 49 H 1.08996 * 109.50946 * 292.33016 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 -0.8426 5 6 3.5639 1.4472 -0.1226 6 7 4.0463 2.8240 0.0707 7 16 5.0886 3.5217 -1.0105 8 8 4.9343 4.9270 -0.8669 9 8 4.9019 2.8414 -2.2441 10 7 6.6260 3.1663 -0.5084 11 6 7.3250 2.0017 -1.0573 12 6 7.1352 0.8055 -0.1224 13 6 7.2873 4.0166 0.4846 14 6 8.1665 5.0189 -0.2178 15 1 8.2270 5.0220 -1.2960 16 6 8.8944 5.9313 0.5162 17 7 8.8211 5.9271 1.8293 18 14 9.9847 7.1732 -0.3545 19 1 9.1554 8.0157 -1.2533 20 1 10.6549 8.0351 0.6521 21 1 11.0101 6.4566 -1.1545 22 6 3.5702 3.5645 1.2499 23 1 3.9997 3.1315 2.1533 24 6 3.9820 5.0336 1.1365 25 6 3.5937 5.7724 2.4188 26 6 2.0418 3.4584 1.3027 27 8 1.6624 2.0825 1.2213 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8525 1.0927 -1.1121 34 1 3.9928 0.7975 0.6403 35 1 8.3878 2.2258 -1.1493 36 1 6.9177 1.7632 -2.0398 37 1 7.5425 1.0441 0.8601 38 1 7.6556 -0.0608 -0.5306 39 1 6.0724 0.5814 -0.0304 40 1 6.5343 4.5422 1.0719 41 1 7.8962 3.3985 1.1444 42 1 9.3329 6.5692 2.3456 43 1 5.0604 5.0986 0.9922 44 1 3.4735 5.4890 0.2867 45 1 4.1627 5.3696 3.2568 46 1 3.8137 6.8342 2.3072 47 1 2.5281 5.6399 2.6061 48 1 1.6797 3.8811 2.2399 49 1 1.6097 4.0062 0.4653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593629468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:36 Heat of formation + Delta-G solvation = -131.886926 kcal Electronic energy + Delta-G solvation = -30277.126101 eV Core-core repulsion = 26365.823183 eV Total energy + Delta-G solvation = -3911.302918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73286 -38.74670 -37.72864 -37.04006 -36.53607 -35.14963 -34.70693 -33.59662 -31.55384 -29.90335 -28.50526 -27.81654 -25.89563 -24.95851 -23.60224 -23.20852 -22.51653 -21.87387 -19.83776 -18.78354 -18.54321 -17.98152 -17.87236 -17.32674 -16.81350 -16.39405 -16.04761 -15.80282 -15.69953 -15.31367 -14.81670 -14.77084 -14.66207 -14.40902 -14.33685 -14.02036 -13.85048 -13.61435 -13.53615 -13.37668 -13.19477 -13.08344 -12.85365 -12.77696 -12.70561 -12.60829 -12.27577 -12.19815 -12.15596 -12.01629 -11.85643 -11.80042 -11.72915 -11.65520 -11.35707 -11.22296 -10.83991 -10.52865 -9.87155 -9.71957 -8.19243 -6.29879 -0.39237 1.38175 1.40963 1.47963 1.93094 2.38743 2.52443 2.73766 3.11357 3.30072 3.54351 3.67868 3.87359 3.96874 4.02724 4.06404 4.16693 4.27177 4.38717 4.42028 4.45707 4.48290 4.49994 4.60547 4.66162 4.67757 4.70896 4.81393 4.86415 4.96026 5.00068 5.08221 5.11930 5.14790 5.16187 5.25513 5.28553 5.33775 5.39341 5.45805 5.49110 5.60039 5.61523 5.80593 5.98058 6.13046 6.17805 6.77126 7.38007 8.87548 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.004491 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.022261 B = 6232.523482 C = 7060.753286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.078 3.922 4 H 0.056 0.944 5 C 0.085 3.915 6 N -1.004 6.004 7 S 2.781 3.219 8 O -0.990 6.990 9 O -1.011 7.011 10 N -0.997 5.997 11 C 0.107 3.893 12 C -0.162 4.162 13 C 0.271 3.729 14 C -0.547 4.547 15 H 0.047 0.953 16 C 0.018 3.982 17 N -0.919 5.919 18 Si 0.950 3.050 19 H -0.279 1.279 20 H -0.276 1.276 21 H -0.267 1.267 22 C 0.125 3.875 23 H 0.085 0.915 24 C -0.155 4.155 25 C -0.144 4.144 26 C 0.061 3.939 27 O -0.376 6.376 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.021 0.979 42 H 0.267 0.733 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.081 0.919 48 H 0.130 0.870 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 -12.149 0.216 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.018 3.982 4 H 0.074 0.926 5 C -0.040 4.040 6 N -0.845 5.845 7 S 2.793 3.207 8 O -0.973 6.973 9 O -0.996 6.996 10 N -0.837 5.837 11 C -0.018 4.018 12 C -0.221 4.221 13 C 0.148 3.852 14 C -0.586 4.586 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.558 5.558 18 Si 0.775 3.225 19 H -0.204 1.204 20 H -0.201 1.201 21 H -0.192 1.192 22 C 0.019 3.981 23 H 0.103 0.897 24 C -0.193 4.193 25 C -0.201 4.201 26 C -0.017 4.017 27 O -0.295 6.295 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.147 0.853 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.433 -11.658 -0.273 18.555 hybrid contribution 1.341 1.073 -0.280 1.740 sum -13.092 -10.586 -0.553 16.845 Atomic orbital electron populations 1.21682 0.94533 1.02334 1.01823 1.21561 0.97303 0.92052 1.04082 1.22527 0.92316 0.96043 0.87273 0.92607 1.22291 0.96176 0.81745 1.03819 1.58279 1.61398 1.24461 1.40389 1.01877 0.72734 0.73240 0.72832 1.93737 1.85751 1.31643 1.86207 1.93455 1.86434 1.76849 1.42817 1.57706 1.31107 1.38004 1.56914 1.21365 0.98716 0.84686 0.97050 1.22183 1.02348 0.97606 0.99925 1.18724 0.92366 0.87821 0.86309 1.21748 1.26819 1.16763 0.93299 0.93428 1.25631 0.98072 0.98945 0.95545 1.69987 1.42555 1.37533 1.05770 0.85740 0.79052 0.79181 0.78527 1.20426 1.20121 1.19171 1.21859 0.96766 0.91625 0.87842 0.89727 1.22546 1.03699 0.93378 0.99715 1.21769 1.02265 1.00008 0.96090 1.23078 0.91673 0.82970 1.04000 1.87916 1.79242 1.23913 1.38419 0.91194 0.92880 0.92984 0.88745 0.90257 0.88254 0.89273 0.90861 0.90003 0.93135 0.89237 0.92191 0.95050 0.96139 0.92437 0.91130 0.90513 0.92597 0.93065 0.90039 0.85271 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.81 71.98 0.71 -1.44 16 2 C -0.11 -1.77 5.64 30.60 0.17 -1.60 16 3 C 0.08 1.70 2.76 30.56 0.08 1.78 16 4 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 5 C 0.08 2.09 5.12 86.22 0.44 2.53 16 6 N -1.00 -31.48 3.40 -490.08 -1.67 -33.15 16 7 S 2.78 111.75 5.86 -56.49 -0.33 111.42 16 8 O -0.99 -46.37 11.96 -128.00 -1.53 -47.90 16 9 O -1.01 -41.77 15.25 -128.00 -1.95 -43.72 16 10 N -1.00 -41.64 2.83 -519.84 -1.47 -43.11 16 11 C 0.11 3.75 6.38 86.38 0.55 4.30 16 12 C -0.16 -4.38 10.24 71.98 0.74 -3.65 16 13 C 0.27 13.56 5.11 85.63 0.44 14.00 16 14 C -0.55 -30.77 9.37 25.60 0.24 -30.53 16 15 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 16 C 0.02 1.01 5.46 84.66 0.46 1.47 16 17 N -0.92 -52.93 13.29 21.45 0.28 -52.65 16 18 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 C 0.13 3.67 3.16 44.97 0.14 3.81 16 23 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 24 C -0.15 -5.40 3.70 30.59 0.11 -5.29 16 25 C -0.14 -4.06 9.79 71.98 0.70 -3.36 16 26 C 0.06 1.43 5.86 72.08 0.42 1.86 16 27 O -0.38 -8.85 9.92 -148.98 -1.48 -10.33 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 2.41 6.96 -2.39 -0.02 2.39 16 34 H 0.09 1.92 7.62 -2.39 -0.02 1.90 16 35 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 36 H 0.08 2.71 6.88 -2.39 -0.02 2.70 16 37 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.45 6.69 -2.39 -0.02 1.44 16 40 H 0.03 1.66 5.03 -2.38 -0.01 1.65 16 41 H 0.02 1.06 8.11 -2.39 -0.02 1.05 16 42 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.07 3.11 3.26 -2.39 -0.01 3.10 16 44 H 0.08 2.84 6.71 -2.39 -0.02 2.83 16 45 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.08 1.71 6.60 -2.39 -0.02 1.69 16 48 H 0.13 2.39 6.92 -2.39 -0.02 2.37 16 49 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -68.17 382.16 0.02 -68.15 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.92 Total: 20.84 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.21 Total: -16.12 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -2.85 Total: -128.90 kcal Atomic # 8 Polarization: -96.98 SS G_CDS: -4.96 Total: -101.94 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 111.75 SS G_CDS: -0.33 Total: 111.42 kcal Total: -68.17 0.02 -68.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.736 kcal (2) G-P(sol) polarization free energy of solvation -68.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds