Wall clock time and date at job start Tue Mar 31 2020 17:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47345 * 2 1 4 4 H 1.09001 * 109.55287 * 54.86874 * 3 2 1 5 5 C 1.53289 * 109.51557 * 175.00239 * 3 2 1 6 6 N 1.47155 * 108.38722 * 172.22608 * 5 3 2 7 7 S 1.65592 * 120.98199 * 129.44155 * 6 5 3 8 8 O 1.42102 * 106.40412 * 151.95267 * 7 6 5 9 9 O 1.42100 * 106.40432 * 19.03175 * 7 6 5 10 10 N 1.65607 * 107.21883 * 265.49180 * 7 6 5 11 11 C 1.46490 * 120.00123 * 275.75383 * 10 7 6 12 12 C 1.52999 * 109.47305 * 264.99901 * 11 10 7 13 13 C 1.46495 * 119.99904 * 95.75216 * 10 7 6 14 14 C 1.50699 * 109.47555 * 262.96316 * 13 10 7 15 15 H 1.07997 * 119.99563 * 355.27604 * 14 13 10 16 16 C 1.37871 * 120.00355 * 175.27496 * 14 13 10 17 17 N 1.31514 * 120.00339 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47217 * 60.00403 * 18 16 14 20 20 H 1.48506 * 109.47260 * 299.99975 * 18 16 14 21 21 H 1.48503 * 109.47016 * 180.02562 * 18 16 14 22 22 C 1.47155 * 118.03363 * 309.71422 * 6 5 3 23 23 H 1.09002 * 109.67840 * 170.00147 * 22 6 5 24 24 C 1.53004 * 109.68211 * 290.56061 * 22 6 5 25 25 C 1.52993 * 109.47036 * 294.55385 * 24 22 6 26 26 C 1.52879 * 108.60717 * 50.22566 * 22 6 5 27 27 O 1.42962 * 109.29863 * 307.93544 * 26 22 6 28 28 H 1.09003 * 109.47366 * 60.00052 * 1 2 3 29 29 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47203 * 300.00008 * 1 2 3 31 31 H 1.09008 * 109.46616 * 239.99839 * 2 1 3 32 32 H 1.08991 * 109.47125 * 120.00296 * 2 1 3 33 33 H 1.09000 * 109.68422 * 52.50435 * 5 3 2 34 34 H 1.09003 * 109.71062 * 291.96911 * 5 3 2 35 35 H 1.09004 * 109.47356 * 24.99861 * 11 10 7 36 36 H 1.09002 * 109.47397 * 144.99854 * 11 10 7 37 37 H 1.08994 * 109.47252 * 299.99862 * 12 11 10 38 38 H 1.09003 * 109.47097 * 60.00434 * 12 11 10 39 39 H 1.09006 * 109.47197 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47397 * 142.95636 * 13 10 7 41 41 H 1.09010 * 109.47208 * 22.96081 * 13 10 7 42 42 H 0.97006 * 119.99429 * 359.97438 * 17 16 14 43 43 H 1.08997 * 109.46987 * 54.55393 * 24 22 6 44 44 H 1.09002 * 109.46890 * 174.55256 * 24 22 6 45 45 H 1.09008 * 109.47340 * 305.14679 * 25 24 22 46 46 H 1.09003 * 109.47204 * 65.14416 * 25 24 22 47 47 H 1.09000 * 109.47022 * 185.14730 * 25 24 22 48 48 H 1.08997 * 109.58504 * 187.92061 * 26 22 6 49 49 H 1.09006 * 109.40888 * 67.83905 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9834 0.8400 5 6 3.5678 1.4454 0.1259 6 7 4.0465 2.8238 -0.0645 7 16 5.0844 3.5231 1.0200 8 8 5.8392 4.4821 0.2920 9 8 5.6782 2.4588 1.7507 10 7 4.1633 4.3754 2.1005 11 6 3.7318 5.7382 1.7803 12 6 4.7160 6.7405 2.3865 13 6 3.7799 3.7665 3.3766 14 6 2.3914 3.1920 3.2622 15 1 1.8193 3.3387 2.3580 16 6 1.8516 2.4792 4.3116 17 7 2.5481 2.3010 5.4128 18 14 0.1302 1.7677 4.1699 19 1 0.0789 0.8195 3.0283 20 1 -0.8428 2.8669 3.9447 21 1 -0.2143 1.0518 5.4245 22 6 3.5709 3.5645 -1.2437 23 1 3.8604 4.6121 -1.1605 24 6 4.1784 2.9603 -2.5113 25 6 5.6938 3.1703 -2.5007 26 6 2.0472 3.4565 -1.3057 27 8 1.6674 2.0807 -1.2238 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.0003 0.7980 -0.6370 34 1 3.8558 1.0900 1.1153 35 1 3.7037 5.8657 0.6981 36 1 2.7375 5.9108 2.1923 37 1 4.7441 6.6132 3.4686 38 1 5.7103 6.5680 1.9744 39 1 4.3952 7.7546 2.1478 40 1 3.7963 4.5240 4.1601 41 1 4.4827 2.9712 3.6254 42 1 3.4419 2.6708 5.4865 43 1 3.9597 1.8931 -2.5459 44 1 3.7502 3.4476 -3.3873 45 1 5.9129 4.2306 -2.3740 46 1 6.1328 2.6077 -1.6767 47 1 6.1154 2.8223 -3.4437 48 1 1.6890 3.8778 -2.2450 49 1 1.6109 4.0049 -0.4708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593629469.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:40 Heat of formation + Delta-G solvation = -138.268824 kcal Electronic energy + Delta-G solvation = -30989.315815 eV Core-core repulsion = 27077.736157 eV Total energy + Delta-G solvation = -3911.579658 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.55912 -36.88311 -36.22843 -35.55654 -35.27759 -33.82479 -32.98944 -32.15301 -29.93178 -29.25051 -26.93923 -26.20369 -24.09936 -23.32115 -22.94256 -21.89796 -21.36919 -19.89361 -18.42849 -17.52755 -17.23630 -16.66421 -16.41640 -15.75041 -15.28570 -15.00311 -14.73815 -14.29614 -13.97441 -13.94411 -13.70257 -13.50540 -13.29164 -13.13958 -13.02685 -12.52674 -12.32142 -12.10503 -11.93597 -11.83902 -11.74501 -11.72498 -11.63421 -11.45210 -11.22455 -11.15446 -11.06859 -10.99481 -10.78553 -10.75619 -10.70662 -10.51765 -10.40104 -10.21673 -9.93825 -9.91978 -9.36792 -8.51912 -8.44704 -7.98924 -6.48430 -4.23276 1.12118 3.28787 3.32728 3.34852 3.52964 3.93595 3.98685 4.41465 4.68367 4.77543 4.94035 5.04381 5.13403 5.21645 5.24082 5.27921 5.37200 5.43061 5.47714 5.57432 5.64384 5.65984 5.69498 5.71376 5.77093 5.85667 5.95518 5.97937 5.98980 6.03510 6.13309 6.16657 6.19515 6.26240 6.35788 6.41498 6.46842 6.53921 6.55383 6.55547 6.78899 6.99156 7.17535 7.41987 7.46150 7.92277 8.31802 8.68575 9.48388 10.88642 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.007702 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.917572 B = 3634.524909 C = 5421.144192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.074 3.926 4 H 0.084 0.916 5 C 0.103 3.897 6 N -0.999 5.999 7 S 2.783 3.217 8 O -0.990 6.990 9 O -0.978 6.978 10 N -0.988 5.988 11 C 0.132 3.868 12 C -0.170 4.170 13 C 0.235 3.765 14 C -0.616 4.616 15 H 0.056 0.944 16 C 0.025 3.975 17 N -0.904 5.904 18 Si 1.056 2.944 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.282 1.282 22 C 0.121 3.879 23 H 0.095 0.905 24 C -0.124 4.124 25 C -0.151 4.151 26 C 0.057 3.943 27 O -0.374 6.374 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.041 0.959 42 H 0.270 0.730 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.097 0.903 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 1.965 -13.772 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.102 0.898 5 C -0.023 4.023 6 N -0.837 5.837 7 S 2.793 3.207 8 O -0.974 6.974 9 O -0.962 6.962 10 N -0.829 5.829 11 C 0.005 3.995 12 C -0.229 4.229 13 C 0.113 3.887 14 C -0.655 4.655 15 H 0.074 0.926 16 C -0.181 4.181 17 N -0.539 5.539 18 Si 0.884 3.116 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.207 1.207 22 C 0.014 3.986 23 H 0.112 0.888 24 C -0.163 4.163 25 C -0.208 4.208 26 C -0.022 4.022 27 O -0.293 6.293 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.115 0.885 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.265 0.908 -13.058 13.151 hybrid contribution 0.855 1.168 -0.502 1.532 sum -0.410 2.076 -13.560 13.724 Atomic orbital electron populations 1.21735 0.95320 1.01227 1.02419 1.21474 0.96831 0.94198 1.02572 1.22640 0.93529 0.94575 0.87702 0.89843 1.21968 0.94958 0.82024 1.03345 1.58364 1.65842 1.22773 1.36726 1.01888 0.73680 0.72907 0.72237 1.93544 1.68365 1.62406 1.73115 1.93564 1.75036 1.55903 1.71695 1.57685 1.70722 1.22886 1.31616 1.20970 0.98901 0.81262 0.98372 1.22211 1.00256 0.98573 1.01898 1.19243 0.96604 0.93272 0.79618 1.22292 1.00805 1.38249 1.04166 0.92585 1.25710 1.04905 0.95000 0.92448 1.70787 1.12524 1.43346 1.27240 0.83760 0.74708 0.76671 0.76490 1.20431 1.21470 1.20685 1.21555 0.95194 0.96013 0.85870 0.88755 1.21741 0.95961 1.02240 0.96352 1.21767 0.95588 1.02570 1.00870 1.22802 0.92981 0.84130 1.02286 1.87861 1.79731 1.23167 1.38513 0.92276 0.93072 0.92373 0.91519 0.90165 0.91462 0.87954 0.92304 0.90225 0.92242 0.92400 0.92236 0.95695 0.94086 0.91903 0.90975 0.91201 0.91778 0.93507 0.93008 0.88454 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 37.16 0.36 -1.67 16 2 C -0.11 -1.60 5.64 -26.73 -0.15 -1.75 16 3 C 0.07 1.19 2.78 -26.58 -0.07 1.12 16 4 H 0.08 1.56 6.79 -51.93 -0.35 1.21 16 5 C 0.10 1.71 5.48 -3.53 -0.02 1.70 16 6 N -1.00 -16.80 2.68 -106.25 -0.28 -17.09 16 7 S 2.78 55.29 6.03 -107.50 -0.65 54.64 16 8 O -0.99 -19.53 15.35 -57.17 -0.88 -20.41 16 9 O -0.98 -22.85 15.24 -57.17 -0.87 -23.72 16 10 N -0.99 -19.97 2.83 -115.67 -0.33 -20.29 16 11 C 0.13 2.22 6.05 -4.05 -0.02 2.20 16 12 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 13 C 0.24 5.65 4.78 -5.20 -0.02 5.62 16 14 C -0.62 -15.50 9.34 -34.44 -0.32 -15.82 16 15 H 0.06 1.37 6.49 -52.49 -0.34 1.03 16 16 C 0.03 0.67 5.46 -17.82 -0.10 0.57 16 17 N -0.90 -25.94 13.65 55.43 0.76 -25.19 16 18 Si 1.06 23.34 29.90 -169.99 -5.08 18.26 16 19 H -0.28 -5.62 6.37 56.52 0.36 -5.26 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.12 1.67 2.51 -67.63 -0.17 1.50 16 23 H 0.09 1.26 6.81 -51.93 -0.35 0.90 16 24 C -0.12 -1.52 5.33 -26.73 -0.14 -1.66 16 25 C -0.15 -1.97 9.10 37.15 0.34 -1.64 16 26 C 0.06 0.74 6.33 37.10 0.23 0.97 16 27 O -0.37 -5.53 9.65 -35.23 -0.34 -5.87 16 28 H 0.06 0.78 7.83 -51.93 -0.41 0.37 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.88 7.41 -51.93 -0.38 0.49 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16 34 H 0.10 1.93 7.12 -51.93 -0.37 1.56 16 35 H 0.06 0.87 7.19 -51.93 -0.37 0.49 16 36 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 37 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 38 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.04 1.09 6.51 -51.92 -0.34 0.75 16 42 H 0.27 7.79 7.19 -40.82 -0.29 7.50 16 43 H 0.07 0.92 7.14 -51.93 -0.37 0.55 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.87 8.00 -51.92 -0.42 0.46 16 46 H 0.05 0.70 7.92 -51.93 -0.41 0.29 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -30.27 390.17 -10.20 -40.47 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.70 Total: 4.44 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 0.29 Total: -11.12 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.14 Total: -62.57 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.09 Total: -50.01 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.08 Total: 18.26 kcal Atomic # 16 Polarization: 55.29 SS G_CDS: -0.65 Total: 54.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.27 -10.20 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629469.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.800 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds