Wall clock time and date at job start Tue Mar 31 2020 17:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47345 * 2 1 4 4 H 1.09001 * 109.55287 * 54.86874 * 3 2 1 5 5 C 1.53289 * 109.51557 * 175.00239 * 3 2 1 6 6 N 1.47155 * 108.38722 * 172.22608 * 5 3 2 7 7 S 1.65592 * 120.98199 * 129.44155 * 6 5 3 8 8 O 1.42102 * 106.40412 * 151.95267 * 7 6 5 9 9 O 1.42100 * 106.40432 * 19.03175 * 7 6 5 10 10 N 1.65607 * 107.21883 * 265.49180 * 7 6 5 11 11 C 1.46490 * 120.00123 * 275.75383 * 10 7 6 12 12 C 1.52999 * 109.47305 * 264.99901 * 11 10 7 13 13 C 1.46495 * 119.99904 * 95.75216 * 10 7 6 14 14 C 1.50699 * 109.47555 * 262.96316 * 13 10 7 15 15 H 1.07997 * 119.99563 * 355.27604 * 14 13 10 16 16 C 1.37871 * 120.00355 * 175.27496 * 14 13 10 17 17 N 1.31514 * 120.00339 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47217 * 60.00403 * 18 16 14 20 20 H 1.48506 * 109.47260 * 299.99975 * 18 16 14 21 21 H 1.48503 * 109.47016 * 180.02562 * 18 16 14 22 22 C 1.47155 * 118.03363 * 309.71422 * 6 5 3 23 23 H 1.09002 * 109.67840 * 170.00147 * 22 6 5 24 24 C 1.53004 * 109.68211 * 290.56061 * 22 6 5 25 25 C 1.52993 * 109.47036 * 294.55385 * 24 22 6 26 26 C 1.52879 * 108.60717 * 50.22566 * 22 6 5 27 27 O 1.42962 * 109.29863 * 307.93544 * 26 22 6 28 28 H 1.09003 * 109.47366 * 60.00052 * 1 2 3 29 29 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47203 * 300.00008 * 1 2 3 31 31 H 1.09008 * 109.46616 * 239.99839 * 2 1 3 32 32 H 1.08991 * 109.47125 * 120.00296 * 2 1 3 33 33 H 1.09000 * 109.68422 * 52.50435 * 5 3 2 34 34 H 1.09003 * 109.71062 * 291.96911 * 5 3 2 35 35 H 1.09004 * 109.47356 * 24.99861 * 11 10 7 36 36 H 1.09002 * 109.47397 * 144.99854 * 11 10 7 37 37 H 1.08994 * 109.47252 * 299.99862 * 12 11 10 38 38 H 1.09003 * 109.47097 * 60.00434 * 12 11 10 39 39 H 1.09006 * 109.47197 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47397 * 142.95636 * 13 10 7 41 41 H 1.09010 * 109.47208 * 22.96081 * 13 10 7 42 42 H 0.97006 * 119.99429 * 359.97438 * 17 16 14 43 43 H 1.08997 * 109.46987 * 54.55393 * 24 22 6 44 44 H 1.09002 * 109.46890 * 174.55256 * 24 22 6 45 45 H 1.09008 * 109.47340 * 305.14679 * 25 24 22 46 46 H 1.09003 * 109.47204 * 65.14416 * 25 24 22 47 47 H 1.09000 * 109.47022 * 185.14730 * 25 24 22 48 48 H 1.08997 * 109.58504 * 187.92061 * 26 22 6 49 49 H 1.09006 * 109.40888 * 67.83905 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9834 0.8400 5 6 3.5678 1.4454 0.1259 6 7 4.0465 2.8238 -0.0645 7 16 5.0844 3.5231 1.0200 8 8 5.8392 4.4821 0.2920 9 8 5.6782 2.4588 1.7507 10 7 4.1633 4.3754 2.1005 11 6 3.7318 5.7382 1.7803 12 6 4.7160 6.7405 2.3865 13 6 3.7799 3.7665 3.3766 14 6 2.3914 3.1920 3.2622 15 1 1.8193 3.3387 2.3580 16 6 1.8516 2.4792 4.3116 17 7 2.5481 2.3010 5.4128 18 14 0.1302 1.7677 4.1699 19 1 0.0789 0.8195 3.0283 20 1 -0.8428 2.8669 3.9447 21 1 -0.2143 1.0518 5.4245 22 6 3.5709 3.5645 -1.2437 23 1 3.8604 4.6121 -1.1605 24 6 4.1784 2.9603 -2.5113 25 6 5.6938 3.1703 -2.5007 26 6 2.0472 3.4565 -1.3057 27 8 1.6674 2.0807 -1.2238 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.0003 0.7980 -0.6370 34 1 3.8558 1.0900 1.1153 35 1 3.7037 5.8657 0.6981 36 1 2.7375 5.9108 2.1923 37 1 4.7441 6.6132 3.4686 38 1 5.7103 6.5680 1.9744 39 1 4.3952 7.7546 2.1478 40 1 3.7963 4.5240 4.1601 41 1 4.4827 2.9712 3.6254 42 1 3.4419 2.6708 5.4865 43 1 3.9597 1.8931 -2.5459 44 1 3.7502 3.4476 -3.3873 45 1 5.9129 4.2306 -2.3740 46 1 6.1328 2.6077 -1.6767 47 1 6.1154 2.8223 -3.4437 48 1 1.6890 3.8778 -2.2450 49 1 1.6109 4.0049 -0.4708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593629469.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:39 Heat of formation + Delta-G solvation = -157.899943 kcal Electronic energy + Delta-G solvation = -30990.167084 eV Core-core repulsion = 27077.736157 eV Total energy + Delta-G solvation = -3912.430927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74731 -38.52984 -37.88762 -37.03194 -36.66244 -35.03668 -34.90763 -33.27961 -31.49305 -30.35757 -28.22989 -28.00613 -25.30283 -25.05027 -24.08446 -23.45826 -22.51654 -21.18635 -19.85991 -19.13601 -18.90311 -18.37703 -17.69841 -17.28323 -16.60235 -16.27914 -15.85878 -15.72789 -15.60358 -15.36552 -14.99908 -14.90313 -14.71600 -14.46163 -14.23321 -14.07825 -13.78304 -13.43575 -13.41486 -13.34919 -13.26629 -13.17004 -12.97735 -12.87333 -12.80488 -12.66151 -12.40543 -12.29751 -12.15860 -12.00252 -11.87818 -11.83381 -11.78247 -11.69400 -11.41466 -11.19048 -10.98886 -10.52935 -9.81618 -9.68096 -8.61202 -6.36846 -0.45724 1.53368 1.59808 1.77095 1.81084 2.41582 2.57038 2.80750 3.17535 3.22266 3.59120 3.75328 3.81207 3.97108 3.98642 4.07413 4.18792 4.27176 4.30923 4.35392 4.41710 4.49362 4.54490 4.58003 4.62956 4.66699 4.70885 4.84393 4.86415 4.87851 4.93651 4.95091 5.01704 5.06602 5.11063 5.15310 5.21876 5.27201 5.31361 5.33680 5.45513 5.47059 5.54879 5.80682 5.88527 6.24171 6.26719 6.53013 7.43535 8.74939 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.007702 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.917572 B = 3634.524909 C = 5421.144192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.082 3.918 4 H 0.053 0.947 5 C 0.102 3.898 6 N -0.995 5.995 7 S 2.790 3.210 8 O -0.990 6.990 9 O -1.020 7.020 10 N -0.994 5.994 11 C 0.122 3.878 12 C -0.167 4.167 13 C 0.249 3.751 14 C -0.605 4.605 15 H 0.065 0.935 16 C -0.024 4.024 17 N -0.936 5.936 18 Si 1.093 2.907 19 H -0.250 1.250 20 H -0.271 1.271 21 H -0.292 1.292 22 C 0.111 3.889 23 H 0.102 0.898 24 C -0.118 4.118 25 C -0.152 4.152 26 C 0.054 3.946 27 O -0.370 6.370 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.012 0.988 41 H 0.008 0.992 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 2.459 -17.080 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.023 3.977 4 H 0.071 0.929 5 C -0.024 4.024 6 N -0.836 5.836 7 S 2.801 3.199 8 O -0.973 6.973 9 O -1.004 7.004 10 N -0.834 5.834 11 C -0.003 4.003 12 C -0.226 4.226 13 C 0.124 3.876 14 C -0.644 4.644 15 H 0.083 0.917 16 C -0.223 4.223 17 N -0.573 5.573 18 Si 0.915 3.085 19 H -0.174 1.174 20 H -0.196 1.196 21 H -0.218 1.218 22 C 0.006 3.994 23 H 0.120 0.880 24 C -0.157 4.157 25 C -0.210 4.210 26 C -0.024 4.024 27 O -0.289 6.289 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.092 0.908 48 H 0.154 0.846 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.025 1.443 -16.400 16.739 hybrid contribution 1.475 1.093 0.426 1.885 sum -1.550 2.536 -15.973 16.248 Atomic orbital electron populations 1.21710 0.94557 1.02320 1.01767 1.21516 0.97471 0.93015 1.03234 1.22455 0.92405 0.95503 0.87364 0.92880 1.21999 0.95925 0.82123 1.02322 1.58137 1.65500 1.22918 1.37017 1.01464 0.73880 0.72342 0.72190 1.93533 1.68660 1.62332 1.72808 1.93507 1.76436 1.57436 1.73063 1.57630 1.70839 1.24429 1.30473 1.21264 0.99142 0.79710 1.00191 1.22195 0.99516 1.00154 1.00777 1.18819 0.95506 0.92095 0.81134 1.22515 1.00931 1.36959 1.04015 0.91664 1.27064 1.07898 0.95289 0.92046 1.70915 1.12311 1.45305 1.28816 0.83313 0.71056 0.77143 0.76983 1.17448 1.19643 1.21765 1.21932 0.96034 0.96224 0.85227 0.88013 1.21742 0.95153 1.02315 0.96443 1.21787 0.96445 1.01738 1.00987 1.23016 0.92135 0.83291 1.03935 1.87868 1.79596 1.24028 1.37373 0.91660 0.91166 0.94180 0.89496 0.90924 0.89402 0.91076 0.89586 0.90325 0.93694 0.93256 0.88741 0.97011 0.97373 0.93543 0.91207 0.87900 0.92443 0.96145 0.90835 0.84581 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.81 71.98 0.71 -2.90 16 2 C -0.11 -3.03 5.64 30.59 0.17 -2.85 16 3 C 0.08 2.51 2.78 30.69 0.09 2.60 16 4 H 0.05 1.96 6.79 -2.39 -0.02 1.94 16 5 C 0.10 3.37 5.48 86.35 0.47 3.84 16 6 N -1.00 -32.75 2.68 -490.08 -1.31 -34.06 16 7 S 2.79 112.48 6.03 -56.49 -0.34 112.14 16 8 O -0.99 -38.61 15.35 -128.00 -1.96 -40.57 16 9 O -1.02 -49.97 15.24 -128.00 -1.95 -51.92 16 10 N -0.99 -40.80 2.83 -519.87 -1.47 -42.27 16 11 C 0.12 4.01 6.05 86.38 0.52 4.54 16 12 C -0.17 -5.03 10.24 71.98 0.74 -4.29 16 13 C 0.25 12.47 4.78 85.63 0.41 12.88 16 14 C -0.61 -31.08 9.34 25.60 0.24 -30.84 16 15 H 0.07 3.19 6.49 -2.91 -0.02 3.17 16 16 C -0.02 -1.29 5.46 84.65 0.46 -0.83 16 17 N -0.94 -55.79 13.65 21.44 0.29 -55.50 16 18 Si 1.09 46.87 29.90 68.60 2.05 48.92 16 19 H -0.25 -9.50 6.37 99.48 0.63 -8.87 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 C 0.11 2.79 2.51 44.83 0.11 2.90 16 23 H 0.10 2.41 6.81 -2.39 -0.02 2.39 16 24 C -0.12 -2.47 5.33 30.59 0.16 -2.31 16 25 C -0.15 -3.64 9.10 71.98 0.66 -2.99 16 26 C 0.05 1.23 6.33 71.94 0.46 1.69 16 27 O -0.37 -9.82 9.65 -148.98 -1.44 -11.26 16 28 H 0.06 1.52 7.83 -2.39 -0.02 1.50 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.12 7.41 -2.39 -0.02 1.10 16 31 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.51 7.54 -2.39 -0.02 2.49 16 34 H 0.07 2.80 7.12 -2.39 -0.02 2.78 16 35 H 0.09 2.34 7.19 -2.38 -0.02 2.33 16 36 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 37 H 0.04 1.46 8.13 -2.39 -0.02 1.44 16 38 H 0.05 1.55 7.99 -2.39 -0.02 1.53 16 39 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.01 0.62 8.10 -2.39 -0.02 0.60 16 41 H 0.01 0.47 6.51 -2.38 -0.02 0.46 16 42 H 0.26 15.56 7.19 -92.70 -0.67 14.89 16 43 H 0.07 1.54 7.14 -2.39 -0.02 1.52 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.44 8.00 -2.38 -0.02 1.42 16 46 H 0.02 0.57 7.92 -2.39 -0.02 0.55 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.14 2.09 8.13 -2.39 -0.02 2.07 16 49 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -67.98 390.17 0.00 -67.98 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.94 Total: 25.11 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 5.19 Total: -18.56 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -2.49 Total: -131.83 kcal Atomic # 8 Polarization: -98.40 SS G_CDS: -5.35 Total: -103.75 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.05 Total: 48.92 kcal Atomic # 16 Polarization: 112.48 SS G_CDS: -0.34 Total: 112.14 kcal Total: -67.98 0.00 -67.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629469.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.920 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds