Wall clock time and date at job start Tue Mar 31 2020 17:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 H 1.08997 * 109.51372 * 304.90444 * 3 2 1 5 5 C 1.52884 * 109.62523 * 184.90618 * 3 2 1 6 6 N 1.47152 * 108.60735 * 187.89815 * 5 3 2 7 7 S 1.65593 * 120.98212 * 230.50367 * 6 5 3 8 8 O 1.42094 * 106.40157 * 331.38537 * 7 6 5 9 9 O 1.42105 * 106.40212 * 198.46840 * 7 6 5 10 10 N 1.65601 * 107.22076 * 84.92906 * 7 6 5 11 11 C 1.46499 * 119.99808 * 275.47626 * 10 7 6 12 12 C 1.46503 * 120.00068 * 95.47278 * 10 7 6 13 13 H 1.09000 * 109.46988 * 0.02562 * 12 10 7 14 14 C 1.52998 * 109.47377 * 240.00285 * 12 10 7 15 15 C 1.50699 * 109.46928 * 119.99999 * 12 10 7 16 16 H 1.08003 * 119.99778 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00033 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99988 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99900 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47025 * 90.00767 * 19 17 15 21 21 H 1.48500 * 109.46824 * 210.00273 * 19 17 15 22 22 H 1.48498 * 109.47285 * 330.00059 * 19 17 15 23 23 C 1.47157 * 118.03323 * 50.23108 * 6 5 3 24 24 H 1.08994 * 109.67856 * 189.99227 * 23 6 5 25 25 C 1.52998 * 109.68348 * 69.43654 * 23 6 5 26 26 C 1.53002 * 109.46923 * 65.42089 * 25 23 6 27 27 C 1.53296 * 108.38536 * 309.71351 * 23 6 5 28 28 O 1.42959 * 109.50904 * 65.00199 * 3 2 1 29 29 H 1.09001 * 109.47026 * 299.99359 * 1 2 3 30 30 H 1.08999 * 109.47101 * 60.00045 * 1 2 3 31 31 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46827 * 239.99882 * 2 1 3 33 33 H 1.08999 * 109.47195 * 120.00737 * 2 1 3 34 34 H 1.08999 * 109.61345 * 68.07780 * 5 3 2 35 35 H 1.09002 * 109.52290 * 307.66814 * 5 3 2 36 36 H 1.08991 * 109.47056 * 266.18336 * 11 10 7 37 37 H 1.09003 * 109.46991 * 26.18694 * 11 10 7 38 38 H 1.09003 * 109.47143 * 146.18368 * 11 10 7 39 39 H 1.09002 * 109.46950 * 59.99672 * 14 12 10 40 40 H 1.08994 * 109.47118 * 180.02562 * 14 12 10 41 41 H 1.08994 * 109.46952 * 300.00359 * 14 12 10 42 42 H 0.96998 * 119.99649 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47061 * 185.42089 * 25 23 6 44 44 H 1.09003 * 109.47036 * 305.42173 * 25 23 6 45 45 H 1.09005 * 109.46642 * 175.98193 * 26 25 23 46 46 H 1.09002 * 109.47101 * 295.98396 * 26 25 23 47 47 H 1.09002 * 109.46943 * 55.98653 * 26 25 23 48 48 H 1.08999 * 109.51417 * 172.22957 * 27 23 6 49 49 H 1.09004 * 109.51242 * 292.33151 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6072 1.9817 -0.8426 5 6 3.5639 1.4483 -0.1232 6 7 4.0453 2.8254 0.0696 7 16 5.0866 3.5237 -1.0121 8 8 5.8417 2.4641 -1.5833 9 8 5.6799 4.6278 -0.3425 10 7 4.1693 4.1573 -2.2366 11 6 3.7449 3.3052 -3.3502 12 6 3.7822 5.5700 -2.2063 13 1 4.1872 6.0384 -1.3092 14 6 2.2563 5.6806 -2.1955 15 6 4.3278 6.2666 -3.4262 16 1 4.9048 5.7123 -4.1517 17 6 4.0895 7.6112 -3.6166 18 7 3.3865 8.2859 -2.7333 19 14 4.7652 8.4744 -5.1291 20 1 3.7708 8.3963 -6.2292 21 1 5.0358 9.8985 -4.8066 22 1 6.0261 7.8149 -5.5536 23 6 3.5691 3.5658 1.2489 24 1 3.8611 4.6127 1.1675 25 6 4.1729 2.9588 2.5169 26 6 5.6889 3.1649 2.5090 27 6 2.0408 3.4586 1.3024 28 8 1.6623 2.0824 1.2213 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8524 1.0936 -1.1127 35 1 3.9935 0.7989 0.6397 36 1 4.4608 3.3920 -4.1673 37 1 3.6977 2.2685 -3.0168 38 1 2.7602 3.6213 -3.6947 39 1 1.8617 5.1767 -1.3131 40 1 1.9684 6.7316 -2.1734 41 1 1.8518 5.2121 -3.0926 42 1 3.2192 9.2319 -2.8671 43 1 3.7445 3.4462 3.3926 44 1 3.9514 1.8920 2.5501 45 1 6.1105 2.7964 3.4442 46 1 6.1256 2.6181 1.6732 47 1 5.9107 4.2269 2.4039 48 1 1.6788 3.8813 2.2396 49 1 1.6079 4.0059 0.4650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593630839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:45 Heat of formation + Delta-G solvation = -127.311609 kcal Electronic energy + Delta-G solvation = -30456.161175 eV Core-core repulsion = 26545.056657 eV Total energy + Delta-G solvation = -3911.104517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74249 -36.82598 -36.20805 -35.69379 -35.21299 -34.10338 -32.62462 -32.28417 -29.41363 -29.10831 -27.10897 -25.65123 -25.17544 -24.26065 -23.14334 -21.62932 -20.88815 -19.85412 -18.40186 -17.55531 -16.98396 -16.71423 -16.39360 -15.64994 -15.35620 -15.09455 -14.90004 -14.48702 -14.10856 -14.01570 -13.61572 -13.46738 -13.31974 -13.23153 -12.84749 -12.51966 -12.23345 -12.03574 -11.99442 -11.81474 -11.75721 -11.67598 -11.40934 -11.31682 -11.29013 -11.25172 -11.10764 -11.01329 -10.87437 -10.82195 -10.75815 -10.54907 -10.33150 -10.22181 -10.14931 -9.89851 -9.29353 -8.63087 -8.48153 -7.99752 -6.10182 -4.16734 1.09060 3.26407 3.32945 3.33851 3.38647 3.71633 4.02107 4.38003 4.53182 4.72862 4.81745 4.92731 5.00112 5.02270 5.12045 5.17900 5.21389 5.32924 5.39721 5.48375 5.55114 5.55570 5.59915 5.64590 5.74274 5.81031 5.82934 5.94804 6.00055 6.05297 6.08008 6.09256 6.19920 6.29608 6.34700 6.47528 6.56377 6.64171 6.73885 6.79611 6.98064 7.19036 7.42340 7.60031 7.75784 8.00495 8.24427 8.85529 9.49284 10.95440 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.004612 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.240718 B = 6070.270340 C = 6576.652525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.077 3.923 4 H 0.065 0.935 5 C 0.097 3.903 6 N -1.007 6.007 7 S 2.775 3.225 8 O -0.994 6.994 9 O -0.967 6.967 10 N -0.991 5.991 11 C 0.110 3.890 12 C 0.267 3.733 13 H 0.061 0.939 14 C -0.147 4.147 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.118 3.882 24 H 0.108 0.892 25 C -0.122 4.122 26 C -0.155 4.155 27 C 0.055 3.945 28 O -0.371 6.371 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.009 0.991 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.102 0.898 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -13.796 8.038 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.018 3.982 4 H 0.083 0.917 5 C -0.029 4.029 6 N -0.844 5.844 7 S 2.786 3.214 8 O -0.977 6.977 9 O -0.951 6.951 10 N -0.833 5.833 11 C -0.037 4.037 12 C 0.164 3.836 13 H 0.079 0.921 14 C -0.206 4.206 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.011 3.989 24 H 0.126 0.874 25 C -0.162 4.162 26 C -0.212 4.212 27 C -0.024 4.024 28 O -0.290 6.290 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.120 0.880 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.668 -13.673 8.281 16.653 hybrid contribution 0.089 0.703 -1.175 1.372 sum -4.579 -12.970 7.106 15.482 Atomic orbital electron populations 1.21690 0.95056 1.01332 1.02435 1.21509 0.96900 0.94043 1.02813 1.22423 0.93387 0.94332 0.88046 0.91678 1.21898 0.94885 0.83356 1.02788 1.58649 1.66022 1.22174 1.37596 1.02164 0.73842 0.72643 0.72770 1.93534 1.68243 1.57844 1.78113 1.93587 1.74424 1.52551 1.74526 1.57791 1.71543 1.19927 1.34060 1.21144 1.01184 0.91160 0.90191 1.18751 0.92230 0.73488 0.99098 0.92132 1.22126 0.97952 1.03689 0.96842 1.21327 1.33665 0.94050 1.06981 0.92017 1.24897 0.95014 0.97183 0.96711 1.69851 1.39203 1.08883 1.34911 0.86502 0.79422 0.78813 0.82728 1.20637 1.21089 1.19837 1.21703 0.94735 0.97146 0.85284 0.87367 1.21726 0.96027 1.01849 0.96555 1.21800 0.95616 1.02844 1.00951 1.22991 0.93302 0.83088 1.02976 1.87887 1.79489 1.23792 1.37825 0.91927 0.92825 0.92910 0.90470 0.91030 0.89236 0.90791 0.93049 0.93651 0.91171 0.97248 0.88820 0.94823 0.92684 0.90990 0.91239 0.92798 0.93627 0.91498 0.87998 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.93 16 2 C -0.11 -1.04 5.65 -26.73 -0.15 -1.20 16 3 C 0.08 0.89 2.76 -26.79 -0.07 0.82 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 5 C 0.10 1.23 5.42 -3.75 -0.02 1.21 16 6 N -1.01 -15.41 2.66 -106.26 -0.28 -15.70 16 7 S 2.77 54.85 6.03 -107.50 -0.65 54.20 16 8 O -0.99 -20.96 16.31 -57.17 -0.93 -21.89 16 9 O -0.97 -21.96 15.14 -57.17 -0.87 -22.83 16 10 N -0.99 -20.36 3.12 -115.85 -0.36 -20.72 16 11 C 0.11 1.93 9.60 59.85 0.57 2.50 16 12 C 0.27 6.40 2.65 -69.08 -0.18 6.22 16 13 H 0.06 1.61 6.77 -51.93 -0.35 1.26 16 14 C -0.15 -3.22 8.94 37.16 0.33 -2.89 16 15 C -0.52 -13.88 8.37 -34.44 -0.29 -14.17 16 16 H 0.06 1.65 7.54 -52.48 -0.40 1.26 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.12 1.65 2.57 -67.42 -0.17 1.48 16 24 H 0.11 1.69 7.12 -51.93 -0.37 1.32 16 25 C -0.12 -1.49 5.35 -26.73 -0.14 -1.63 16 26 C -0.15 -2.07 9.68 37.16 0.36 -1.72 16 27 C 0.05 0.68 6.36 37.31 0.24 0.91 16 28 O -0.37 -4.59 9.64 -35.23 -0.34 -4.93 16 29 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.11 6.80 -51.93 -0.35 0.76 16 35 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 36 H 0.05 0.93 8.02 -51.93 -0.42 0.51 16 37 H 0.04 0.66 7.21 -51.93 -0.37 0.28 16 38 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 39 H 0.01 0.17 7.18 -51.93 -0.37 -0.21 16 40 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 41 H 0.03 0.70 6.68 -51.93 -0.35 0.35 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.82 7.15 -51.93 -0.37 0.45 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.67 7.89 -51.93 -0.41 0.26 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.06 0.84 7.18 -51.93 -0.37 0.46 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -30.86 386.52 -9.78 -40.63 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.52 Total: 0.95 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.74 Total: -7.76 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.02 Total: -60.17 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -2.14 Total: -49.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.65 Total: 54.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.86 -9.78 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.678 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds