Wall clock time and date at job start Tue Mar 31 2020 17:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 H 1.08997 * 109.51372 * 304.90444 * 3 2 1 5 5 C 1.52884 * 109.62523 * 184.90618 * 3 2 1 6 6 N 1.47152 * 108.60735 * 187.89815 * 5 3 2 7 7 S 1.65593 * 120.98212 * 230.50367 * 6 5 3 8 8 O 1.42094 * 106.40157 * 331.38537 * 7 6 5 9 9 O 1.42105 * 106.40212 * 198.46840 * 7 6 5 10 10 N 1.65601 * 107.22076 * 84.92906 * 7 6 5 11 11 C 1.46499 * 119.99808 * 275.47626 * 10 7 6 12 12 C 1.46503 * 120.00068 * 95.47278 * 10 7 6 13 13 H 1.09000 * 109.46988 * 0.02562 * 12 10 7 14 14 C 1.52998 * 109.47377 * 240.00285 * 12 10 7 15 15 C 1.50699 * 109.46928 * 119.99999 * 12 10 7 16 16 H 1.08003 * 119.99778 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00033 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99988 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99900 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47025 * 90.00767 * 19 17 15 21 21 H 1.48500 * 109.46824 * 210.00273 * 19 17 15 22 22 H 1.48498 * 109.47285 * 330.00059 * 19 17 15 23 23 C 1.47157 * 118.03323 * 50.23108 * 6 5 3 24 24 H 1.08994 * 109.67856 * 189.99227 * 23 6 5 25 25 C 1.52998 * 109.68348 * 69.43654 * 23 6 5 26 26 C 1.53002 * 109.46923 * 65.42089 * 25 23 6 27 27 C 1.53296 * 108.38536 * 309.71351 * 23 6 5 28 28 O 1.42959 * 109.50904 * 65.00199 * 3 2 1 29 29 H 1.09001 * 109.47026 * 299.99359 * 1 2 3 30 30 H 1.08999 * 109.47101 * 60.00045 * 1 2 3 31 31 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46827 * 239.99882 * 2 1 3 33 33 H 1.08999 * 109.47195 * 120.00737 * 2 1 3 34 34 H 1.08999 * 109.61345 * 68.07780 * 5 3 2 35 35 H 1.09002 * 109.52290 * 307.66814 * 5 3 2 36 36 H 1.08991 * 109.47056 * 266.18336 * 11 10 7 37 37 H 1.09003 * 109.46991 * 26.18694 * 11 10 7 38 38 H 1.09003 * 109.47143 * 146.18368 * 11 10 7 39 39 H 1.09002 * 109.46950 * 59.99672 * 14 12 10 40 40 H 1.08994 * 109.47118 * 180.02562 * 14 12 10 41 41 H 1.08994 * 109.46952 * 300.00359 * 14 12 10 42 42 H 0.96998 * 119.99649 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47061 * 185.42089 * 25 23 6 44 44 H 1.09003 * 109.47036 * 305.42173 * 25 23 6 45 45 H 1.09005 * 109.46642 * 175.98193 * 26 25 23 46 46 H 1.09002 * 109.47101 * 295.98396 * 26 25 23 47 47 H 1.09002 * 109.46943 * 55.98653 * 26 25 23 48 48 H 1.08999 * 109.51417 * 172.22957 * 27 23 6 49 49 H 1.09004 * 109.51242 * 292.33151 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6072 1.9817 -0.8426 5 6 3.5639 1.4483 -0.1232 6 7 4.0453 2.8254 0.0696 7 16 5.0866 3.5237 -1.0121 8 8 5.8417 2.4641 -1.5833 9 8 5.6799 4.6278 -0.3425 10 7 4.1693 4.1573 -2.2366 11 6 3.7449 3.3052 -3.3502 12 6 3.7822 5.5700 -2.2063 13 1 4.1872 6.0384 -1.3092 14 6 2.2563 5.6806 -2.1955 15 6 4.3278 6.2666 -3.4262 16 1 4.9048 5.7123 -4.1517 17 6 4.0895 7.6112 -3.6166 18 7 3.3865 8.2859 -2.7333 19 14 4.7652 8.4744 -5.1291 20 1 3.7708 8.3963 -6.2292 21 1 5.0358 9.8985 -4.8066 22 1 6.0261 7.8149 -5.5536 23 6 3.5691 3.5658 1.2489 24 1 3.8611 4.6127 1.1675 25 6 4.1729 2.9588 2.5169 26 6 5.6889 3.1649 2.5090 27 6 2.0408 3.4586 1.3024 28 8 1.6623 2.0824 1.2213 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8524 1.0936 -1.1127 35 1 3.9935 0.7989 0.6397 36 1 4.4608 3.3920 -4.1673 37 1 3.6977 2.2685 -3.0168 38 1 2.7602 3.6213 -3.6947 39 1 1.8617 5.1767 -1.3131 40 1 1.9684 6.7316 -2.1734 41 1 1.8518 5.2121 -3.0926 42 1 3.2192 9.2319 -2.8671 43 1 3.7445 3.4462 3.3926 44 1 3.9514 1.8920 2.5501 45 1 6.1105 2.7964 3.4442 46 1 6.1256 2.6181 1.6732 47 1 5.9107 4.2269 2.4039 48 1 1.6788 3.8813 2.2396 49 1 1.6079 4.0059 0.4650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593630839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:44 Heat of formation + Delta-G solvation = -147.653078 kcal Electronic energy + Delta-G solvation = -30457.043247 eV Core-core repulsion = 26545.056657 eV Total energy + Delta-G solvation = -3911.986590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76067 -38.46839 -37.93411 -36.98339 -36.64226 -35.03128 -34.55453 -33.29284 -30.95723 -30.33430 -28.15733 -27.33082 -27.03728 -25.23816 -24.12608 -22.73042 -22.39251 -21.05764 -19.73660 -19.03798 -18.65513 -18.26228 -17.69370 -17.14673 -16.67989 -16.41286 -16.02614 -15.83861 -15.39083 -15.18411 -14.90814 -14.83114 -14.61991 -14.38032 -14.22729 -13.78449 -13.55023 -13.42094 -13.34734 -13.26988 -13.20531 -13.05057 -12.96493 -12.81494 -12.77287 -12.62051 -12.46455 -12.27986 -12.20098 -12.16608 -11.95895 -11.85330 -11.79245 -11.75411 -11.24424 -11.14755 -11.11759 -10.51577 -9.75922 -9.67936 -8.13725 -6.27330 -0.44905 1.40176 1.42505 1.51724 1.92287 2.39800 2.51368 2.80216 3.14457 3.25302 3.59931 3.74192 3.92117 3.95724 4.01352 4.12063 4.18538 4.28089 4.40170 4.48232 4.51891 4.55939 4.61484 4.66776 4.68148 4.77465 4.83955 4.90298 4.95100 4.98542 5.02675 5.07028 5.08053 5.11397 5.14995 5.18303 5.24491 5.31565 5.42119 5.50105 5.52482 5.59322 5.76402 5.85749 6.11428 6.23679 6.28218 6.79718 7.41701 8.90232 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.004612 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.240718 B = 6070.270340 C = 6576.652525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.078 3.922 4 H 0.058 0.942 5 C 0.090 3.910 6 N -0.998 5.998 7 S 2.785 3.215 8 O -1.010 7.010 9 O -1.004 7.004 10 N -0.998 5.998 11 C 0.103 3.897 12 C 0.274 3.726 13 H 0.027 0.973 14 C -0.132 4.132 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.276 1.276 23 C 0.111 3.889 24 H 0.085 0.915 25 C -0.115 4.115 26 C -0.156 4.156 27 C 0.060 3.940 28 O -0.371 6.371 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.265 0.735 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.025 0.975 47 H 0.045 0.955 48 H 0.127 0.873 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 -15.604 8.450 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C 0.019 3.981 4 H 0.076 0.924 5 C -0.035 4.035 6 N -0.839 5.839 7 S 2.797 3.203 8 O -0.994 6.994 9 O -0.988 6.988 10 N -0.840 5.840 11 C -0.042 4.042 12 C 0.170 3.830 13 H 0.044 0.956 14 C -0.191 4.191 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.180 4.180 18 N -0.550 5.550 19 Si 0.779 3.221 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.202 1.202 23 C 0.005 3.995 24 H 0.103 0.897 25 C -0.154 4.154 26 C -0.214 4.214 27 C -0.018 4.018 28 O -0.289 6.289 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.145 0.855 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.890 -15.498 8.675 18.712 hybrid contribution 0.488 1.199 -1.243 1.795 sum -5.403 -14.299 7.432 16.996 Atomic orbital electron populations 1.21667 0.94754 1.02113 1.01760 1.21539 0.97068 0.92306 1.03961 1.22519 0.92248 0.95770 0.87588 0.92367 1.22203 0.95959 0.81698 1.03636 1.58269 1.65515 1.23222 1.36920 1.01599 0.74015 0.71959 0.72744 1.93500 1.69181 1.57931 1.78758 1.93533 1.75801 1.54286 1.75218 1.57694 1.71630 1.19040 1.35632 1.21342 1.01187 0.92428 0.89280 1.18404 0.93124 0.74991 0.96511 0.95562 1.21895 0.96492 1.02339 0.98392 1.21627 1.33902 0.94715 1.07787 0.92882 1.25597 0.95320 0.97837 0.99203 1.69963 1.39820 1.09073 1.36145 0.85634 0.78808 0.77662 0.80002 1.19388 1.20799 1.20151 1.21896 0.96158 0.96043 0.85427 0.89691 1.21715 0.94846 1.02541 0.96284 1.21820 0.96878 1.01290 1.01396 1.22984 0.91706 0.83338 1.03792 1.87904 1.79312 1.23488 1.38190 0.92968 0.93130 0.91434 0.88869 0.90359 0.88837 0.89292 0.94061 0.90448 0.90314 0.94791 0.91387 0.93993 0.92577 0.88535 0.90170 0.90364 0.95588 0.93540 0.85512 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.81 71.98 0.71 -1.45 16 2 C -0.11 -1.67 5.65 30.59 0.17 -1.50 16 3 C 0.08 1.60 2.76 30.55 0.08 1.69 16 4 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 5 C 0.09 2.10 5.42 86.22 0.47 2.57 16 6 N -1.00 -29.86 2.66 -490.10 -1.30 -31.16 16 7 S 2.78 111.59 6.03 -56.49 -0.34 111.25 16 8 O -1.01 -42.59 16.31 -128.00 -2.09 -44.68 16 9 O -1.00 -47.59 15.14 -128.00 -1.94 -49.52 16 10 N -1.00 -41.37 3.12 -520.45 -1.62 -42.99 16 11 C 0.10 3.55 9.60 127.77 1.23 4.78 16 12 C 0.27 13.42 2.65 44.24 0.12 13.54 16 13 H 0.03 1.47 6.77 -2.39 -0.02 1.46 16 14 C -0.13 -5.81 8.94 71.98 0.64 -5.16 16 15 C -0.54 -29.40 8.37 25.60 0.21 -29.19 16 16 H 0.05 2.90 7.54 -2.91 -0.02 2.88 16 17 C 0.02 1.12 5.30 84.65 0.45 1.57 16 18 N -0.91 -50.75 11.32 21.45 0.24 -50.51 16 19 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.11 3.01 2.57 44.96 0.12 3.13 16 24 H 0.09 2.73 7.12 -2.39 -0.02 2.71 16 25 C -0.11 -2.58 5.35 30.59 0.16 -2.42 16 26 C -0.16 -4.10 9.68 71.98 0.70 -3.40 16 27 C 0.06 1.38 6.36 72.08 0.46 1.84 16 28 O -0.37 -8.20 9.64 -148.98 -1.44 -9.63 16 29 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 2.11 6.80 -2.39 -0.02 2.10 16 35 H 0.09 1.84 7.53 -2.39 -0.02 1.83 16 36 H 0.04 1.48 8.02 -2.39 -0.02 1.46 16 37 H 0.08 2.12 7.21 -2.39 -0.02 2.10 16 38 H 0.08 2.55 6.44 -2.39 -0.02 2.53 16 39 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16 40 H 0.07 3.38 6.07 -2.39 -0.01 3.36 16 41 H 0.04 1.73 6.68 -2.39 -0.02 1.71 16 42 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 44 H 0.08 1.66 7.15 -2.39 -0.02 1.64 16 45 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.02 0.76 7.89 -2.39 -0.02 0.74 16 47 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.05 1.26 7.18 -2.38 -0.02 1.25 16 Total: -1.00 -67.51 386.52 -0.03 -67.54 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.92 Total: 18.40 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 5.52 Total: -14.01 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -2.68 Total: -124.66 kcal Atomic # 8 Polarization: -98.37 SS G_CDS: -5.46 Total: -103.84 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 111.59 SS G_CDS: -0.34 Total: 111.25 kcal Total: -67.51 -0.03 -67.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.117 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds