Wall clock time and date at job start Tue Mar 31 2020 17:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 H 1.09006 * 109.51317 * 305.00973 * 3 2 1 5 5 C 1.53292 * 109.51456 * 184.89995 * 3 2 1 6 6 N 1.47266 * 108.32503 * 187.76825 * 5 3 2 7 7 S 1.65604 * 120.95679 * 230.49094 * 6 5 3 8 8 O 1.42098 * 106.40510 * 13.02843 * 7 6 5 9 9 O 1.42104 * 106.40106 * 145.95197 * 7 6 5 10 10 N 1.65601 * 107.21559 * 259.48772 * 7 6 5 11 11 C 1.46498 * 120.00269 * 263.13408 * 10 7 6 12 12 C 1.46506 * 119.99590 * 83.13547 * 10 7 6 13 13 H 1.08997 * 109.47221 * 0.02562 * 12 10 7 14 14 C 1.53005 * 109.46835 * 119.99797 * 12 10 7 15 15 C 1.50697 * 109.47276 * 239.99531 * 12 10 7 16 16 H 1.08001 * 119.99801 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99976 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00401 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00073 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46846 * 90.00229 * 19 17 15 21 21 H 1.48493 * 109.47117 * 210.00422 * 19 17 15 22 22 H 1.48501 * 109.46866 * 330.00587 * 19 17 15 23 23 C 1.47151 * 118.05812 * 50.51135 * 6 5 3 24 24 H 1.09000 * 109.67972 * 69.19016 * 23 6 5 25 25 C 1.53002 * 109.70805 * 189.72258 * 23 6 5 26 26 C 1.53007 * 109.46883 * 186.44048 * 25 23 6 27 27 C 1.53293 * 108.38754 * 309.46182 * 23 6 5 28 28 O 1.42959 * 109.50876 * 65.10355 * 3 2 1 29 29 H 1.08997 * 109.47312 * 59.99107 * 1 2 3 30 30 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46300 * 299.99727 * 1 2 3 32 32 H 1.09003 * 109.46591 * 240.00679 * 2 1 3 33 33 H 1.08995 * 109.47566 * 120.00417 * 2 1 3 34 34 H 1.08993 * 109.68418 * 307.44923 * 5 3 2 35 35 H 1.09007 * 109.67952 * 68.00224 * 5 3 2 36 36 H 1.09002 * 109.46662 * 94.41304 * 11 10 7 37 37 H 1.08999 * 109.47308 * 214.40820 * 11 10 7 38 38 H 1.08990 * 109.47299 * 334.41336 * 11 10 7 39 39 H 1.09006 * 109.46823 * 60.00054 * 14 12 10 40 40 H 1.09000 * 109.46977 * 179.97438 * 14 12 10 41 41 H 1.08999 * 109.47312 * 300.00123 * 14 12 10 42 42 H 0.96998 * 120.00425 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47257 * 306.43945 * 25 23 6 44 44 H 1.09005 * 109.47035 * 66.44550 * 25 23 6 45 45 H 1.08995 * 109.47126 * 184.14385 * 26 25 23 46 46 H 1.08997 * 109.46834 * 304.14007 * 26 25 23 47 47 H 1.08994 * 109.47098 * 64.13988 * 26 25 23 48 48 H 1.09001 * 109.51532 * 292.38574 * 27 23 6 49 49 H 1.08996 * 109.55407 * 172.24896 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9823 -0.8415 5 6 3.5681 1.4453 -0.1234 6 7 4.0454 2.8254 0.0671 7 16 5.0858 3.5239 -1.0155 8 8 5.0974 2.6831 -2.1609 9 8 4.7454 4.9027 -1.0668 10 7 6.6041 3.4414 -0.3594 11 6 7.1550 4.5927 0.3598 12 6 7.3963 2.2168 -0.4981 13 1 6.8259 1.4767 -1.0592 14 6 8.6950 2.5314 -1.2436 15 6 7.7212 1.6711 0.8685 16 1 7.3720 2.1847 1.7520 17 6 8.4632 0.5155 0.9908 18 7 8.8879 -0.1103 -0.0851 19 14 8.8653 -0.1615 2.6848 20 1 7.7950 -1.0990 3.1100 21 1 10.1630 -0.8814 2.6349 22 1 8.9572 0.9581 3.6561 23 6 3.5712 3.5650 1.2475 24 1 4.0030 3.1320 2.1499 25 6 3.9810 5.0348 1.1344 26 6 3.6282 5.7639 2.4325 27 6 2.0431 3.4579 1.3036 28 8 1.6645 2.0817 1.2223 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9993 0.7990 0.6410 35 1 3.8571 1.0888 -1.1121 36 1 6.9607 4.4815 1.4266 37 1 8.2303 4.6465 0.1900 38 1 6.6838 5.5064 -0.0020 39 1 9.2656 3.2718 -0.6828 40 1 9.2846 1.6205 -1.3464 41 1 8.4601 2.9262 -2.2320 42 1 9.4103 -0.9231 0.0009 43 1 5.0552 5.1002 0.9613 44 1 3.4499 5.4970 0.3022 45 1 3.8522 6.8253 2.3254 46 1 2.5667 5.6362 2.6439 47 1 4.2145 5.3498 3.2527 48 1 1.6088 4.0049 0.4667 49 1 1.6819 3.8801 2.2413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593630840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:48 Heat of formation + Delta-G solvation = -115.097553 kcal Electronic energy + Delta-G solvation = -30409.595305 eV Core-core repulsion = 26499.020429 eV Total energy + Delta-G solvation = -3910.574876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.56195 -37.21401 -36.24528 -35.56299 -35.25972 -34.01590 -32.71748 -32.49234 -29.13024 -28.89545 -26.68812 -25.63723 -25.17650 -24.78930 -22.48389 -21.39242 -20.80841 -20.70267 -18.29929 -17.24071 -16.82916 -16.67571 -16.44490 -15.83335 -15.21621 -14.95900 -14.67248 -14.61664 -14.31447 -13.74901 -13.59070 -13.44134 -13.25049 -13.21440 -12.90390 -12.78626 -12.50753 -12.00018 -11.97945 -11.91894 -11.59776 -11.54937 -11.39366 -11.18019 -11.14516 -11.04213 -11.02952 -10.99238 -10.89154 -10.76199 -10.55535 -10.37847 -10.29619 -10.19263 -10.00414 -9.74297 -9.30774 -8.53583 -8.50903 -7.96919 -6.11898 -4.20205 1.16420 3.22662 3.29405 3.30701 3.35816 3.77055 4.01981 4.33570 4.63557 4.75566 4.84385 4.99399 5.06777 5.10942 5.18355 5.18507 5.33644 5.37350 5.41939 5.55295 5.57280 5.62683 5.65861 5.75563 5.80677 5.90816 5.94165 6.05930 6.08336 6.13645 6.19145 6.20379 6.28227 6.32905 6.37193 6.53307 6.61380 6.75579 6.81441 6.90268 7.07124 7.24351 7.45953 7.60190 7.74180 8.01569 8.23417 8.83094 9.46433 10.93061 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.005581 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.118019 B = 5015.412424 C = 5888.733017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.081 3.919 4 H 0.059 0.941 5 C 0.092 3.908 6 N -1.004 6.004 7 S 2.780 3.220 8 O -0.983 6.983 9 O -0.994 6.994 10 N -0.990 5.990 11 C 0.097 3.903 12 C 0.272 3.728 13 H 0.052 0.948 14 C -0.146 4.146 15 C -0.522 4.522 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.125 3.875 24 H 0.082 0.918 25 C -0.156 4.156 26 C -0.148 4.148 27 C 0.058 3.942 28 O -0.375 6.375 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.093 0.907 41 H 0.013 0.987 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 5.841 2.725 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.077 0.923 5 C -0.034 4.034 6 N -0.842 5.842 7 S 2.792 3.208 8 O -0.967 6.967 9 O -0.978 6.978 10 N -0.832 5.832 11 C -0.049 4.049 12 C 0.169 3.831 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.562 4.562 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 C 0.018 3.982 24 H 0.100 0.900 25 C -0.194 4.194 26 C -0.206 4.206 27 C -0.020 4.020 28 O -0.293 6.293 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.600 5.957 1.943 14.071 hybrid contribution 0.726 -0.531 1.197 1.498 sum -11.873 5.426 3.140 13.427 Atomic orbital electron populations 1.21696 0.95257 1.01386 1.02089 1.21532 0.96587 0.93999 1.03399 1.22500 0.93758 0.94347 0.87210 0.92273 1.22137 0.94140 0.82836 1.04294 1.58350 1.62641 1.23241 1.39966 1.01926 0.72706 0.72802 0.73387 1.93548 1.86826 1.69334 1.47025 1.93583 1.83448 1.33432 1.87296 1.57722 1.31697 1.22896 1.70843 1.21328 1.00779 0.86872 0.95971 1.18659 0.89017 0.79109 0.96349 0.92988 1.22065 1.00082 1.02327 0.96087 1.21352 1.33915 1.08775 0.92116 0.92028 1.24914 0.95552 0.96578 0.96763 1.69875 1.36685 1.18315 1.27738 0.86547 0.77794 0.79077 0.84259 1.20648 1.21190 1.19967 1.21652 0.95255 0.92190 0.89057 0.90020 1.22523 1.04208 0.93005 0.99692 1.21776 1.01215 1.00488 0.97121 1.22984 0.93609 0.83099 1.02316 1.87904 1.79477 1.23707 1.38235 0.93058 0.92789 0.92052 0.90119 0.90637 0.90074 0.87942 0.93570 0.90817 0.91677 0.94801 0.88845 0.96813 0.92646 0.90034 0.88280 0.92190 0.92750 0.92576 0.92900 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 37.16 0.36 -1.12 16 2 C -0.12 -1.36 5.65 -26.73 -0.15 -1.51 16 3 C 0.08 1.12 2.77 -26.58 -0.07 1.04 16 4 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 5 C 0.09 1.50 6.02 -3.47 -0.02 1.48 16 6 N -1.00 -17.18 3.40 -105.95 -0.36 -17.54 16 7 S 2.78 54.72 5.65 -107.50 -0.61 54.12 16 8 O -0.98 -22.27 15.36 -57.17 -0.88 -23.15 16 9 O -0.99 -19.12 12.12 -57.17 -0.69 -19.82 16 10 N -0.99 -20.41 3.12 -115.85 -0.36 -20.77 16 11 C 0.10 1.71 8.32 59.85 0.50 2.21 16 12 C 0.27 6.57 2.60 -69.08 -0.18 6.39 16 13 H 0.05 1.39 7.11 -51.93 -0.37 1.02 16 14 C -0.15 -3.46 8.94 37.16 0.33 -3.13 16 15 C -0.52 -13.27 8.37 -34.44 -0.29 -13.56 16 16 H 0.06 1.55 7.52 -52.49 -0.39 1.15 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 19 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.13 1.83 3.14 -67.42 -0.21 1.62 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 C -0.16 -2.18 3.76 -26.73 -0.10 -2.28 16 26 C -0.15 -1.59 9.80 37.16 0.36 -1.22 16 27 C 0.06 0.74 5.90 37.31 0.22 0.96 16 28 O -0.37 -5.26 9.93 -35.23 -0.35 -5.61 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.65 7.83 -51.93 -0.41 0.25 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.10 1.74 6.78 -51.93 -0.35 1.39 16 36 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 37 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 38 H 0.06 1.03 6.30 -51.93 -0.33 0.71 16 39 H 0.03 0.74 6.69 -51.93 -0.35 0.40 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.08 1.25 3.35 -51.93 -0.17 1.07 16 44 H 0.10 1.48 6.56 -51.93 -0.34 1.14 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.49 6.68 -51.93 -0.35 0.15 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 49 H 0.10 1.04 6.97 -51.93 -0.36 0.68 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -29.63 375.90 -9.57 -39.20 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.25 Total: 3.60 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 0.66 Total: -7.54 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.09 Total: -61.80 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -1.92 Total: -48.57 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 54.72 SS G_CDS: -0.61 Total: 54.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.63 -9.57 -39.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.901 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds