Wall clock time and date at job start Tue Mar 31 2020 17:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 H 1.09006 * 109.51317 * 305.00973 * 3 2 1 5 5 C 1.53292 * 109.51456 * 184.89995 * 3 2 1 6 6 N 1.47266 * 108.32503 * 187.76825 * 5 3 2 7 7 S 1.65604 * 120.95679 * 230.49094 * 6 5 3 8 8 O 1.42098 * 106.40510 * 13.02843 * 7 6 5 9 9 O 1.42104 * 106.40106 * 145.95197 * 7 6 5 10 10 N 1.65601 * 107.21559 * 259.48772 * 7 6 5 11 11 C 1.46498 * 120.00269 * 263.13408 * 10 7 6 12 12 C 1.46506 * 119.99590 * 83.13547 * 10 7 6 13 13 H 1.08997 * 109.47221 * 0.02562 * 12 10 7 14 14 C 1.53005 * 109.46835 * 119.99797 * 12 10 7 15 15 C 1.50697 * 109.47276 * 239.99531 * 12 10 7 16 16 H 1.08001 * 119.99801 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99976 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00401 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00073 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46846 * 90.00229 * 19 17 15 21 21 H 1.48493 * 109.47117 * 210.00422 * 19 17 15 22 22 H 1.48501 * 109.46866 * 330.00587 * 19 17 15 23 23 C 1.47151 * 118.05812 * 50.51135 * 6 5 3 24 24 H 1.09000 * 109.67972 * 69.19016 * 23 6 5 25 25 C 1.53002 * 109.70805 * 189.72258 * 23 6 5 26 26 C 1.53007 * 109.46883 * 186.44048 * 25 23 6 27 27 C 1.53293 * 108.38754 * 309.46182 * 23 6 5 28 28 O 1.42959 * 109.50876 * 65.10355 * 3 2 1 29 29 H 1.08997 * 109.47312 * 59.99107 * 1 2 3 30 30 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46300 * 299.99727 * 1 2 3 32 32 H 1.09003 * 109.46591 * 240.00679 * 2 1 3 33 33 H 1.08995 * 109.47566 * 120.00417 * 2 1 3 34 34 H 1.08993 * 109.68418 * 307.44923 * 5 3 2 35 35 H 1.09007 * 109.67952 * 68.00224 * 5 3 2 36 36 H 1.09002 * 109.46662 * 94.41304 * 11 10 7 37 37 H 1.08999 * 109.47308 * 214.40820 * 11 10 7 38 38 H 1.08990 * 109.47299 * 334.41336 * 11 10 7 39 39 H 1.09006 * 109.46823 * 60.00054 * 14 12 10 40 40 H 1.09000 * 109.46977 * 179.97438 * 14 12 10 41 41 H 1.08999 * 109.47312 * 300.00123 * 14 12 10 42 42 H 0.96998 * 120.00425 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47257 * 306.43945 * 25 23 6 44 44 H 1.09005 * 109.47035 * 66.44550 * 25 23 6 45 45 H 1.08995 * 109.47126 * 184.14385 * 26 25 23 46 46 H 1.08997 * 109.46834 * 304.14007 * 26 25 23 47 47 H 1.08994 * 109.47098 * 64.13988 * 26 25 23 48 48 H 1.09001 * 109.51532 * 292.38574 * 27 23 6 49 49 H 1.08996 * 109.55407 * 172.24896 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9823 -0.8415 5 6 3.5681 1.4453 -0.1234 6 7 4.0454 2.8254 0.0671 7 16 5.0858 3.5239 -1.0155 8 8 5.0974 2.6831 -2.1609 9 8 4.7454 4.9027 -1.0668 10 7 6.6041 3.4414 -0.3594 11 6 7.1550 4.5927 0.3598 12 6 7.3963 2.2168 -0.4981 13 1 6.8259 1.4767 -1.0592 14 6 8.6950 2.5314 -1.2436 15 6 7.7212 1.6711 0.8685 16 1 7.3720 2.1847 1.7520 17 6 8.4632 0.5155 0.9908 18 7 8.8879 -0.1103 -0.0851 19 14 8.8653 -0.1615 2.6848 20 1 7.7950 -1.0990 3.1100 21 1 10.1630 -0.8814 2.6349 22 1 8.9572 0.9581 3.6561 23 6 3.5712 3.5650 1.2475 24 1 4.0030 3.1320 2.1499 25 6 3.9810 5.0348 1.1344 26 6 3.6282 5.7639 2.4325 27 6 2.0431 3.4579 1.3036 28 8 1.6645 2.0817 1.2223 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9993 0.7990 0.6410 35 1 3.8571 1.0888 -1.1121 36 1 6.9607 4.4815 1.4266 37 1 8.2303 4.6465 0.1900 38 1 6.6838 5.5064 -0.0020 39 1 9.2656 3.2718 -0.6828 40 1 9.2846 1.6205 -1.3464 41 1 8.4601 2.9262 -2.2320 42 1 9.4103 -0.9231 0.0009 43 1 5.0552 5.1002 0.9613 44 1 3.4499 5.4970 0.3022 45 1 3.8522 6.8253 2.3254 46 1 2.5667 5.6362 2.6439 47 1 4.2145 5.3498 3.2527 48 1 1.6088 4.0049 0.4667 49 1 1.6819 3.8801 2.2413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593630840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:47 Heat of formation + Delta-G solvation = -134.179906 kcal Electronic energy + Delta-G solvation = -30410.422778 eV Core-core repulsion = 26499.020429 eV Total energy + Delta-G solvation = -3911.402349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70457 -38.73742 -37.99184 -37.02907 -36.64626 -35.13041 -34.55303 -33.60813 -30.96886 -29.91029 -27.83656 -27.33302 -27.03655 -25.83706 -23.53931 -22.57174 -22.52054 -21.88551 -19.82806 -18.80329 -18.42955 -18.12228 -17.84034 -17.30216 -16.76728 -16.38674 -15.93644 -15.75025 -15.69375 -15.21844 -14.87135 -14.74663 -14.66953 -14.43208 -14.26075 -13.95927 -13.70080 -13.60676 -13.46927 -13.24437 -13.16765 -12.95062 -12.87770 -12.79817 -12.67298 -12.57928 -12.28523 -12.22371 -12.18588 -12.12518 -11.96197 -11.88149 -11.82934 -11.47374 -11.27331 -11.16292 -10.98302 -10.52171 -9.86571 -9.61843 -8.10994 -6.25684 -0.38339 1.42695 1.44781 1.53376 1.85163 2.42303 2.48009 2.73289 3.17163 3.28639 3.53870 3.66743 3.85134 3.99787 4.03264 4.08010 4.15223 4.28653 4.40883 4.44503 4.48082 4.59114 4.65209 4.67153 4.73003 4.76300 4.81375 4.85823 4.92343 4.98306 4.99252 5.08123 5.12148 5.13048 5.14573 5.23479 5.25789 5.28981 5.41570 5.45749 5.55441 5.59964 5.75131 5.82986 6.07876 6.17322 6.26996 6.82886 7.44099 8.93455 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.005581 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.118019 B = 5015.412424 C = 5888.733017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.087 3.913 4 H 0.063 0.937 5 C 0.088 3.912 6 N -1.003 6.003 7 S 2.788 3.212 8 O -1.019 7.019 9 O -0.990 6.990 10 N -0.997 5.997 11 C 0.094 3.906 12 C 0.278 3.722 13 H 0.018 0.982 14 C -0.140 4.140 15 C -0.525 4.525 16 H 0.064 0.936 17 C 0.019 3.981 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.119 3.881 24 H 0.079 0.921 25 C -0.156 4.156 26 C -0.143 4.143 27 C 0.058 3.942 28 O -0.379 6.379 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.018 0.982 42 H 0.264 0.736 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 6.765 4.605 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.027 3.973 4 H 0.081 0.919 5 C -0.038 4.038 6 N -0.844 5.844 7 S 2.801 3.199 8 O -1.003 7.003 9 O -0.974 6.974 10 N -0.838 5.838 11 C -0.052 4.052 12 C 0.174 3.826 13 H 0.036 0.964 14 C -0.199 4.199 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.191 1.191 23 C 0.013 3.987 24 H 0.097 0.903 25 C -0.195 4.195 26 C -0.201 4.201 27 C -0.020 4.020 28 O -0.298 6.298 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.989 6.913 3.831 16.067 hybrid contribution 1.128 -0.772 0.600 1.493 sum -12.860 6.141 4.431 14.924 Atomic orbital electron populations 1.21654 0.93716 1.02389 1.02112 1.21578 0.97873 0.92541 1.03577 1.22502 0.91526 0.95795 0.87467 0.91876 1.22221 0.96275 0.82240 1.03077 1.58210 1.61910 1.23697 1.40544 1.01558 0.72644 0.72606 0.73120 1.93497 1.87273 1.70261 1.49262 1.93594 1.83276 1.33093 1.87419 1.57646 1.32174 1.22551 1.71420 1.21499 1.00835 0.86445 0.96392 1.18319 0.88933 0.79868 0.95527 0.96402 1.21951 0.99811 1.01560 0.96624 1.21542 1.33495 1.08834 0.92555 0.91820 1.25637 0.95597 0.96963 0.99889 1.70004 1.37362 1.18675 1.29573 0.85603 0.77352 0.78497 0.80434 1.20488 1.21181 1.19101 1.21924 0.96776 0.92317 0.87635 0.90318 1.22491 1.03041 0.92676 1.01284 1.21757 1.02607 1.00512 0.95187 1.23151 0.91943 0.82697 1.04197 1.87908 1.79234 1.24432 1.38190 0.92528 0.91342 0.92479 0.89510 0.90995 0.91150 0.89434 0.92554 0.90871 0.89883 0.93530 0.91088 0.96265 0.92703 0.91594 0.89283 0.91281 0.90720 0.92208 0.92362 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.81 71.98 0.71 -1.88 16 2 C -0.12 -2.62 5.65 30.60 0.17 -2.45 16 3 C 0.09 2.31 2.77 30.69 0.09 2.40 16 4 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 5 C 0.09 2.91 6.02 86.33 0.52 3.43 16 6 N -1.00 -34.27 3.40 -489.11 -1.66 -35.93 16 7 S 2.79 110.79 5.65 -56.49 -0.32 110.47 16 8 O -1.02 -47.68 15.36 -128.00 -1.97 -49.64 16 9 O -0.99 -37.55 12.12 -128.00 -1.55 -39.11 16 10 N -1.00 -41.29 3.12 -520.45 -1.62 -42.91 16 11 C 0.09 3.21 8.32 127.77 1.06 4.28 16 12 C 0.28 13.71 2.60 44.24 0.11 13.83 16 13 H 0.02 1.01 7.11 -2.39 -0.02 1.00 16 14 C -0.14 -6.74 8.94 71.98 0.64 -6.09 16 15 C -0.52 -26.79 8.37 25.60 0.21 -26.58 16 16 H 0.06 3.16 7.52 -2.91 -0.02 3.14 16 17 C 0.02 0.99 5.30 84.65 0.45 1.44 16 18 N -0.92 -50.71 11.32 21.45 0.24 -50.46 16 19 Si 0.96 41.55 29.54 68.60 2.03 43.57 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 C 0.12 3.31 3.14 44.97 0.14 3.45 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 C -0.16 -4.07 3.76 30.60 0.12 -3.96 16 26 C -0.14 -2.63 9.80 71.98 0.71 -1.93 16 27 C 0.06 1.34 5.90 72.08 0.43 1.76 16 28 O -0.38 -9.93 9.93 -148.98 -1.48 -11.41 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.10 7.83 -2.38 -0.02 1.08 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 3.13 6.78 -2.38 -0.02 3.12 16 36 H 0.06 1.80 7.64 -2.39 -0.02 1.78 16 37 H 0.07 2.49 6.44 -2.39 -0.02 2.48 16 38 H 0.08 2.53 6.30 -2.39 -0.02 2.52 16 39 H 0.05 2.06 6.69 -2.38 -0.02 2.04 16 40 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.07 1.92 3.35 -2.39 -0.01 1.91 16 44 H 0.09 2.50 6.56 -2.38 -0.02 2.49 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.07 6.68 -2.39 -0.02 1.05 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 49 H 0.13 2.22 6.97 -2.39 -0.02 2.20 16 Total: -1.00 -63.44 375.90 -0.05 -63.49 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.93 Total: 24.24 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 5.36 Total: -12.30 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -3.04 Total: -129.31 kcal Atomic # 8 Polarization: -95.17 SS G_CDS: -5.00 Total: -100.16 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 110.79 SS G_CDS: -0.32 Total: 110.47 kcal Total: -63.44 -0.05 -63.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.688 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds