Wall clock time and date at job start Tue Mar 31 2020 18:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09001 * 109.46830 * 305.67774 * 3 2 1 5 5 C 1.53000 * 109.47232 * 185.68221 * 3 2 1 6 6 O 1.42896 * 109.46956 * 304.99789 * 5 3 2 7 7 C 1.42903 * 114.00115 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46977 * 179.97438 * 7 6 5 9 9 C 1.53003 * 117.49971 * 243.74352 * 8 7 6 10 10 C 1.53008 * 117.49513 * 175.08889 * 8 7 6 11 11 N 1.46496 * 109.47464 * 65.67951 * 3 2 1 12 12 S 1.65605 * 120.00170 * 241.09645 * 11 3 2 13 13 O 1.42097 * 106.39951 * 46.62265 * 12 11 3 14 14 O 1.42101 * 106.40065 * 179.54820 * 12 11 3 15 15 N 1.65605 * 107.21505 * 293.08611 * 12 11 3 16 16 C 1.46497 * 119.99641 * 86.09552 * 15 12 11 17 17 C 1.52998 * 109.47266 * 95.00046 * 16 15 12 18 18 C 1.46500 * 119.99713 * 266.09181 * 15 12 11 19 19 C 1.50703 * 109.46907 * 96.33813 * 18 15 12 20 20 H 1.07995 * 120.00122 * 2.96406 * 19 18 15 21 21 C 1.37879 * 119.99770 * 182.96959 * 19 18 15 22 22 N 1.31516 * 119.99885 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47524 * 89.99601 * 23 21 19 25 25 H 1.48500 * 109.46872 * 210.00027 * 23 21 19 26 26 H 1.48505 * 109.46828 * 329.99515 * 23 21 19 27 27 H 1.08997 * 109.47397 * 57.36212 * 1 2 3 28 28 H 1.09009 * 109.47048 * 297.36355 * 1 2 3 29 29 H 1.08997 * 109.46920 * 177.36567 * 1 2 3 30 30 H 1.09008 * 109.47324 * 119.99548 * 2 1 3 31 31 H 1.08994 * 109.47195 * 239.99703 * 2 1 3 32 32 H 1.09001 * 109.47371 * 64.99609 * 5 3 2 33 33 H 1.09001 * 109.47583 * 184.99660 * 5 3 2 34 34 H 1.09000 * 109.47345 * 299.99685 * 7 6 5 35 35 H 1.09003 * 109.47005 * 60.00197 * 7 6 5 36 36 H 1.08994 * 115.55129 * 29.42127 * 8 7 6 37 37 H 1.09003 * 117.49720 * 0.02562 * 9 8 7 38 38 H 1.08996 * 117.49437 * 145.02223 * 9 8 7 39 39 H 1.09007 * 117.49401 * 214.98289 * 10 8 7 40 40 H 1.08991 * 117.49907 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99719 * 61.09611 * 11 3 2 42 42 H 1.09010 * 109.46809 * 214.99188 * 16 15 12 43 43 H 1.08996 * 109.47624 * 334.99862 * 16 15 12 44 44 H 1.08998 * 109.47024 * 299.99777 * 17 16 15 45 45 H 1.09004 * 109.47201 * 59.99229 * 17 16 15 46 46 H 1.09002 * 109.47466 * 179.97438 * 17 16 15 47 47 H 1.09001 * 109.46693 * 216.32983 * 18 15 12 48 48 H 1.08991 * 109.47299 * 336.33390 * 18 15 12 49 49 H 0.96994 * 119.99437 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9848 -0.8348 5 6 3.5633 1.4449 -0.1428 6 8 4.1393 0.6370 0.8854 7 6 5.5662 0.5710 0.8420 8 6 6.0706 -0.3152 1.9827 9 6 6.9366 0.3430 3.0587 10 6 7.5716 -0.6067 2.0399 11 7 1.6665 2.0926 1.2586 12 16 0.6842 3.4258 1.2423 13 8 -0.3950 3.1184 0.3706 14 8 0.5031 3.8073 2.5991 15 7 1.5333 4.6513 0.5213 16 6 1.5212 4.7914 -0.9369 17 6 0.4390 5.7933 -1.3441 18 6 2.2962 5.5952 1.3418 19 6 3.7367 5.1567 1.4037 20 1 4.0622 4.2915 0.8454 21 6 4.6389 5.8600 2.1734 22 7 4.2424 6.9138 2.8531 23 14 6.4242 5.3160 2.2508 24 1 7.1943 5.9904 1.1752 25 1 6.9959 5.6805 3.5721 26 1 6.5017 3.8444 2.0670 27 1 -0.3634 0.5542 -0.8654 28 1 -0.3633 0.4724 0.9128 29 1 -0.3633 -1.0266 -0.0472 30 1 1.8934 -0.5138 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 3.8375 1.0421 -1.1178 33 1 3.9350 2.4657 -0.0539 34 1 5.8816 0.1497 -0.1126 35 1 5.9797 1.5736 0.9512 36 1 5.3918 -1.1075 2.2980 37 1 7.1466 1.4075 2.9542 38 1 6.8275 -0.0165 4.0819 39 1 7.8801 -1.5907 2.3933 40 1 8.1995 -0.1675 1.2648 41 1 1.9945 1.7421 2.1014 42 1 2.4936 5.1494 -1.2755 43 1 1.3110 3.8241 -1.3932 44 1 -0.5333 5.4355 -1.0055 45 1 0.6491 6.7607 -0.8877 46 1 0.4303 5.8979 -2.4290 47 1 2.2380 6.5900 0.9000 48 1 1.8802 5.6199 2.3489 49 1 4.8771 7.4083 3.3949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:27 Heat of formation + Delta-G solvation = -114.306740 kcal Electronic energy + Delta-G solvation = -29517.046782 eV Core-core repulsion = 25606.506198 eV Total energy + Delta-G solvation = -3910.540584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.63526 -37.26956 -36.54334 -36.01712 -35.41494 -35.14099 -32.71211 -31.39414 -29.92880 -28.79941 -26.61885 -26.42358 -23.36525 -23.12737 -22.41564 -21.69452 -20.84847 -20.59697 -18.97240 -17.19117 -16.84642 -16.60785 -16.29741 -16.06841 -15.73530 -15.33215 -14.85687 -14.57253 -14.36053 -14.03483 -13.78351 -13.72463 -13.31494 -12.93567 -12.69268 -12.38219 -12.34473 -12.06020 -11.94610 -11.69381 -11.60070 -11.55290 -11.41161 -11.29747 -11.22377 -11.10538 -11.07519 -10.89476 -10.84436 -10.66283 -10.49133 -10.46498 -10.36203 -10.19131 -10.04393 -9.76045 -9.28635 -9.07133 -8.49510 -8.04470 -6.10899 -4.16718 1.35947 3.21331 3.27078 3.29971 3.50348 3.57465 3.91042 4.22898 4.34676 4.77961 4.81151 4.86595 4.97566 4.99979 5.09997 5.23223 5.26658 5.34060 5.38999 5.42860 5.51402 5.55649 5.58314 5.65449 5.75507 5.76919 5.80645 5.84504 5.88814 6.03323 6.06876 6.08092 6.10786 6.16045 6.20204 6.30204 6.49549 6.54238 6.66054 6.68431 7.28866 7.35474 7.42502 7.54255 7.71262 7.86947 8.16424 8.87357 9.48519 10.97367 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008423 B = 0.006431 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.324295 B = 4352.695430 C = 6751.121010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.165 3.835 4 H 0.095 0.905 5 C 0.046 3.954 6 O -0.375 6.375 7 C 0.092 3.908 8 C -0.148 4.148 9 C -0.177 4.177 10 C -0.177 4.177 11 N -1.113 6.113 12 S 2.783 3.217 13 O -0.997 6.997 14 O -0.980 6.980 15 N -0.993 5.993 16 C 0.129 3.871 17 C -0.170 4.170 18 C 0.246 3.754 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.889 5.889 23 Si 0.891 3.109 24 H -0.282 1.282 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.418 0.582 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.053 0.947 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -13.134 -7.654 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.057 3.943 4 H 0.113 0.887 5 C -0.032 4.032 6 O -0.294 6.294 7 C 0.015 3.985 8 C -0.167 4.167 9 C -0.214 4.214 10 C -0.214 4.214 11 N -0.872 5.872 12 S 2.790 3.210 13 O -0.980 6.980 14 O -0.964 6.964 15 N -0.835 5.835 16 C 0.002 3.998 17 C -0.230 4.230 18 C 0.124 3.876 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.139 4.139 22 N -0.528 5.528 23 Si 0.719 3.281 24 H -0.208 1.208 25 H -0.211 1.211 26 H -0.197 1.197 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.252 0.748 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.142 -12.942 -7.210 14.815 hybrid contribution 1.945 -0.129 0.143 1.954 sum 1.803 -13.071 -7.067 14.968 Atomic orbital electron populations 1.21768 0.95396 1.00850 1.02794 1.21785 0.96161 0.95771 1.02788 1.20761 0.92392 0.94687 0.86442 0.88719 1.23056 0.93839 0.96089 0.90194 1.87805 1.18946 1.70106 1.52586 1.21983 0.81789 0.98380 0.96329 1.22097 0.93216 1.02136 0.99205 1.23108 1.03738 0.99146 0.95435 1.22960 0.94733 1.00970 1.02773 1.55975 1.70087 1.47380 1.13737 1.01824 0.73585 0.72498 0.73059 1.93550 1.51579 1.84650 1.68229 1.93591 1.85642 1.82038 1.35147 1.57760 1.67074 1.44926 1.13699 1.21015 0.99854 0.98394 0.80506 1.22208 0.99637 1.00599 1.00513 1.19178 0.90076 0.87873 0.90487 1.21527 0.93846 1.13326 1.28658 0.92025 1.24943 0.98797 0.94948 0.95210 1.69930 1.35039 1.18158 1.29631 0.86629 0.85076 0.78952 0.77468 1.20804 1.21123 1.19702 0.92211 0.92697 0.93221 0.90643 0.91516 0.93080 0.91124 0.93416 0.92782 0.87010 0.88454 0.88638 0.88632 0.88876 0.74813 0.90265 0.92341 0.92415 0.92075 0.92444 0.94670 0.92943 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.50 37.16 0.35 -1.55 16 2 C -0.13 -1.52 5.31 -26.73 -0.14 -1.66 16 3 C 0.17 2.29 2.70 -67.93 -0.18 2.11 16 4 H 0.10 1.24 5.90 -51.93 -0.31 0.93 16 5 C 0.05 0.64 5.77 37.16 0.21 0.85 16 6 O -0.38 -5.49 9.48 -35.23 -0.33 -5.82 16 7 C 0.09 1.24 6.22 37.16 0.23 1.47 16 8 C -0.15 -1.82 6.06 -90.61 -0.55 -2.37 16 9 C -0.18 -2.21 10.18 -26.69 -0.27 -2.49 16 10 C -0.18 -1.84 10.25 -26.69 -0.27 -2.12 16 11 N -1.11 -18.42 4.93 -4.89 -0.02 -18.44 16 12 S 2.78 54.80 5.98 -107.50 -0.64 54.16 16 13 O -1.00 -19.46 16.31 -57.17 -0.93 -20.39 16 14 O -0.98 -23.30 16.61 -57.17 -0.95 -24.25 16 15 N -0.99 -19.93 2.83 -115.66 -0.33 -20.26 16 16 C 0.13 2.13 6.05 -4.04 -0.02 2.11 16 17 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 18 C 0.25 6.04 5.43 -5.19 -0.03 6.01 16 19 C -0.53 -13.71 9.37 -34.44 -0.32 -14.03 16 20 H 0.06 1.50 6.45 -52.49 -0.34 1.16 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 23 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.78 7.77 -51.92 -0.40 0.37 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.95 7.75 -51.92 -0.40 0.54 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.13 6.78 -51.93 -0.35 0.77 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.10 1.38 8.03 -51.93 -0.42 0.96 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.42 6.86 8.92 -34.48 -0.31 6.55 16 42 H 0.08 1.30 8.11 -51.92 -0.42 0.87 16 43 H 0.06 0.83 6.00 -51.93 -0.31 0.52 16 44 H 0.06 0.92 8.05 -51.93 -0.42 0.51 16 45 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 48 H 0.05 1.45 6.86 -51.93 -0.36 1.09 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -31.14 407.29 -10.72 -41.86 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.65 Total: 8.57 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.71 Total: -12.29 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.39 Total: -63.38 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -2.22 Total: -50.46 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.64 Total: 54.16 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.14 -10.72 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.446 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds