Wall clock time and date at job start Tue Mar 31 2020 18:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09001 * 109.46830 * 305.67774 * 3 2 1 5 5 C 1.53000 * 109.47232 * 185.68221 * 3 2 1 6 6 O 1.42896 * 109.46956 * 304.99789 * 5 3 2 7 7 C 1.42903 * 114.00115 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46977 * 179.97438 * 7 6 5 9 9 C 1.53003 * 117.49971 * 243.74352 * 8 7 6 10 10 C 1.53008 * 117.49513 * 175.08889 * 8 7 6 11 11 N 1.46496 * 109.47464 * 65.67951 * 3 2 1 12 12 S 1.65605 * 120.00170 * 241.09645 * 11 3 2 13 13 O 1.42097 * 106.39951 * 46.62265 * 12 11 3 14 14 O 1.42101 * 106.40065 * 179.54820 * 12 11 3 15 15 N 1.65605 * 107.21505 * 293.08611 * 12 11 3 16 16 C 1.46497 * 119.99641 * 86.09552 * 15 12 11 17 17 C 1.52998 * 109.47266 * 95.00046 * 16 15 12 18 18 C 1.46500 * 119.99713 * 266.09181 * 15 12 11 19 19 C 1.50703 * 109.46907 * 96.33813 * 18 15 12 20 20 H 1.07995 * 120.00122 * 2.96406 * 19 18 15 21 21 C 1.37879 * 119.99770 * 182.96959 * 19 18 15 22 22 N 1.31516 * 119.99885 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47524 * 89.99601 * 23 21 19 25 25 H 1.48500 * 109.46872 * 210.00027 * 23 21 19 26 26 H 1.48505 * 109.46828 * 329.99515 * 23 21 19 27 27 H 1.08997 * 109.47397 * 57.36212 * 1 2 3 28 28 H 1.09009 * 109.47048 * 297.36355 * 1 2 3 29 29 H 1.08997 * 109.46920 * 177.36567 * 1 2 3 30 30 H 1.09008 * 109.47324 * 119.99548 * 2 1 3 31 31 H 1.08994 * 109.47195 * 239.99703 * 2 1 3 32 32 H 1.09001 * 109.47371 * 64.99609 * 5 3 2 33 33 H 1.09001 * 109.47583 * 184.99660 * 5 3 2 34 34 H 1.09000 * 109.47345 * 299.99685 * 7 6 5 35 35 H 1.09003 * 109.47005 * 60.00197 * 7 6 5 36 36 H 1.08994 * 115.55129 * 29.42127 * 8 7 6 37 37 H 1.09003 * 117.49720 * 0.02562 * 9 8 7 38 38 H 1.08996 * 117.49437 * 145.02223 * 9 8 7 39 39 H 1.09007 * 117.49401 * 214.98289 * 10 8 7 40 40 H 1.08991 * 117.49907 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99719 * 61.09611 * 11 3 2 42 42 H 1.09010 * 109.46809 * 214.99188 * 16 15 12 43 43 H 1.08996 * 109.47624 * 334.99862 * 16 15 12 44 44 H 1.08998 * 109.47024 * 299.99777 * 17 16 15 45 45 H 1.09004 * 109.47201 * 59.99229 * 17 16 15 46 46 H 1.09002 * 109.47466 * 179.97438 * 17 16 15 47 47 H 1.09001 * 109.46693 * 216.32983 * 18 15 12 48 48 H 1.08991 * 109.47299 * 336.33390 * 18 15 12 49 49 H 0.96994 * 119.99437 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9848 -0.8348 5 6 3.5633 1.4449 -0.1428 6 8 4.1393 0.6370 0.8854 7 6 5.5662 0.5710 0.8420 8 6 6.0706 -0.3152 1.9827 9 6 6.9366 0.3430 3.0587 10 6 7.5716 -0.6067 2.0399 11 7 1.6665 2.0926 1.2586 12 16 0.6842 3.4258 1.2423 13 8 -0.3950 3.1184 0.3706 14 8 0.5031 3.8073 2.5991 15 7 1.5333 4.6513 0.5213 16 6 1.5212 4.7914 -0.9369 17 6 0.4390 5.7933 -1.3441 18 6 2.2962 5.5952 1.3418 19 6 3.7367 5.1567 1.4037 20 1 4.0622 4.2915 0.8454 21 6 4.6389 5.8600 2.1734 22 7 4.2424 6.9138 2.8531 23 14 6.4242 5.3160 2.2508 24 1 7.1943 5.9904 1.1752 25 1 6.9959 5.6805 3.5721 26 1 6.5017 3.8444 2.0670 27 1 -0.3634 0.5542 -0.8654 28 1 -0.3633 0.4724 0.9128 29 1 -0.3633 -1.0266 -0.0472 30 1 1.8934 -0.5138 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 3.8375 1.0421 -1.1178 33 1 3.9350 2.4657 -0.0539 34 1 5.8816 0.1497 -0.1126 35 1 5.9797 1.5736 0.9512 36 1 5.3918 -1.1075 2.2980 37 1 7.1466 1.4075 2.9542 38 1 6.8275 -0.0165 4.0819 39 1 7.8801 -1.5907 2.3933 40 1 8.1995 -0.1675 1.2648 41 1 1.9945 1.7421 2.1014 42 1 2.4936 5.1494 -1.2755 43 1 1.3110 3.8241 -1.3932 44 1 -0.5333 5.4355 -1.0055 45 1 0.6491 6.7607 -0.8877 46 1 0.4303 5.8979 -2.4290 47 1 2.2380 6.5900 0.9000 48 1 1.8802 5.6199 2.3489 49 1 4.8771 7.4083 3.3949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594800381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:26 Heat of formation + Delta-G solvation = -135.237188 kcal Electronic energy + Delta-G solvation = -29517.954395 eV Core-core repulsion = 25606.506198 eV Total energy + Delta-G solvation = -3911.448196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.69836 -38.44837 -38.01926 -37.64668 -36.84486 -36.49943 -34.68638 -32.55066 -31.50326 -29.89137 -28.48869 -27.45617 -24.96511 -24.33960 -23.28840 -23.26164 -21.92418 -21.57218 -20.48006 -18.69577 -18.60206 -18.17838 -17.74586 -17.37646 -16.92216 -16.69539 -16.26302 -15.90261 -15.53680 -15.31929 -15.13095 -14.77636 -14.71480 -14.63671 -13.85442 -13.67666 -13.61911 -13.56615 -13.37169 -13.33957 -13.14308 -13.00675 -12.80525 -12.72217 -12.70579 -12.46284 -12.31238 -12.26338 -12.14686 -12.00811 -11.94264 -11.69663 -11.66374 -11.54519 -11.33205 -11.11111 -10.59078 -10.37926 -10.31802 -9.74828 -8.16772 -6.29347 -0.22765 1.37767 1.39989 1.49055 2.03763 2.40697 2.53174 2.69047 2.97313 3.15449 3.47254 3.71919 3.83710 3.93361 3.96800 4.04678 4.10599 4.31255 4.35038 4.39418 4.45343 4.48144 4.51078 4.56789 4.65088 4.71411 4.74180 4.75041 4.80214 4.94798 4.98354 5.02601 5.07023 5.15947 5.19356 5.19857 5.25241 5.29349 5.42831 5.44789 5.52958 5.57187 5.78261 5.92834 6.12062 6.21068 6.32232 6.83404 7.40225 8.91656 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008423 B = 0.006431 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.324295 B = 4352.695430 C = 6751.121010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.156 3.844 4 H 0.105 0.895 5 C 0.047 3.953 6 O -0.388 6.388 7 C 0.089 3.911 8 C -0.158 4.158 9 C -0.199 4.199 10 C -0.152 4.152 11 N -1.108 6.108 12 S 2.795 3.205 13 O -0.994 6.994 14 O -1.026 7.026 15 N -0.996 5.996 16 C 0.119 3.881 17 C -0.169 4.169 18 C 0.262 3.738 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.009 3.991 22 N -0.931 5.931 23 Si 0.953 3.047 24 H -0.272 1.272 25 H -0.291 1.291 26 H -0.258 1.258 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.418 0.582 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.092 0.908 47 H 0.020 0.980 48 H 0.014 0.986 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -15.792 -9.972 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.049 3.951 4 H 0.123 0.877 5 C -0.031 4.031 6 O -0.307 6.307 7 C 0.013 3.987 8 C -0.176 4.176 9 C -0.236 4.236 10 C -0.189 4.189 11 N -0.868 5.868 12 S 2.803 3.197 13 O -0.977 6.977 14 O -1.011 7.011 15 N -0.837 5.837 16 C -0.006 4.006 17 C -0.228 4.228 18 C 0.138 3.862 19 C -0.572 4.572 20 H 0.093 0.907 21 C -0.190 4.190 22 N -0.571 5.571 23 Si 0.778 3.222 24 H -0.198 1.198 25 H -0.217 1.217 26 H -0.182 1.182 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.253 0.747 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.038 0.962 48 H 0.032 0.968 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.094 -15.614 -9.568 18.345 hybrid contribution 1.495 0.653 0.811 1.822 sum 2.588 -14.961 -8.757 17.527 Atomic orbital electron populations 1.21789 0.95865 1.01878 1.01470 1.21743 0.95610 0.94393 1.03943 1.21112 0.92915 0.95840 0.85184 0.87682 1.23059 0.93348 0.94982 0.91677 1.87796 1.19658 1.69989 1.53256 1.22066 0.81137 0.97485 0.98027 1.22151 0.94561 1.02118 0.98805 1.23118 1.05579 0.98457 0.96449 1.23064 0.93233 1.01223 1.01361 1.55747 1.69739 1.46253 1.15076 1.01283 0.73807 0.72705 0.71887 1.93544 1.51708 1.84667 1.67798 1.93525 1.86525 1.83100 1.37954 1.57645 1.66479 1.44498 1.15094 1.21339 1.00582 1.00419 0.78308 1.22200 0.98576 0.99306 1.02694 1.18681 0.90145 0.88218 0.89164 1.21856 0.94161 1.13206 1.27970 0.90698 1.25798 1.03152 0.95022 0.95041 1.70073 1.36493 1.19659 1.30859 0.85636 0.79961 0.79337 0.77242 1.19756 1.21711 1.18183 0.92444 0.94961 0.91219 0.91047 0.88690 0.89636 0.93636 0.91019 0.95225 0.86597 0.90699 0.87962 0.86447 0.88121 0.74733 0.89958 0.89397 0.93299 0.93650 0.88944 0.96215 0.96841 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.50 71.98 0.68 -2.82 16 2 C -0.12 -2.50 5.31 30.59 0.16 -2.34 16 3 C 0.16 3.98 2.70 44.99 0.12 4.10 16 4 H 0.11 2.44 5.90 -2.39 -0.01 2.42 16 5 C 0.05 1.19 5.77 71.98 0.42 1.60 16 6 O -0.39 -10.54 9.48 -148.98 -1.41 -11.95 16 7 C 0.09 2.22 6.22 71.98 0.45 2.67 16 8 C -0.16 -3.57 6.06 -10.79 -0.07 -3.63 16 9 C -0.20 -4.73 10.18 30.62 0.31 -4.42 16 10 C -0.15 -2.73 10.25 30.62 0.31 -2.42 16 11 N -1.11 -36.07 4.93 -169.39 -0.83 -36.90 16 12 S 2.80 111.13 5.98 -56.49 -0.34 110.79 16 13 O -0.99 -38.14 16.31 -128.00 -2.09 -40.23 16 14 O -1.03 -50.82 16.61 -128.00 -2.13 -52.94 16 15 N -1.00 -40.35 2.83 -519.85 -1.47 -41.82 16 16 C 0.12 3.77 6.05 86.38 0.52 4.29 16 17 C -0.17 -4.99 10.24 71.98 0.74 -4.25 16 18 C 0.26 13.32 5.43 85.63 0.47 13.79 16 19 C -0.53 -27.72 9.37 25.60 0.24 -27.48 16 20 H 0.07 3.63 6.45 -2.91 -0.02 3.61 16 21 C 0.01 0.48 5.46 84.65 0.46 0.94 16 22 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 23 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 0.87 7.77 -2.38 -0.02 0.85 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.61 7.75 -2.38 -0.02 1.59 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.38 6.78 -2.39 -0.02 1.36 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.03 0.87 7.87 -2.39 -0.02 0.85 16 36 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.42 13.77 8.92 -96.74 -0.86 12.91 16 42 H 0.08 2.58 8.11 -2.38 -0.02 2.56 16 43 H 0.09 2.26 6.00 -2.39 -0.01 2.25 16 44 H 0.05 1.52 8.05 -2.39 -0.02 1.50 16 45 H 0.04 1.46 8.13 -2.38 -0.02 1.44 16 46 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.02 1.05 8.11 -2.39 -0.02 1.03 16 48 H 0.01 0.79 6.86 -2.39 -0.02 0.78 16 49 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -69.25 407.29 -1.08 -70.33 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.06 Total: 32.94 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.82 Total: -19.96 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -2.02 Total: -133.30 kcal Atomic # 8 Polarization: -99.50 SS G_CDS: -5.63 Total: -105.13 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 111.13 SS G_CDS: -0.34 Total: 110.79 kcal Total: -69.25 -1.08 -70.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.906 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds