Wall clock time and date at job start Tue Mar 31 2020 18:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47244 * 240.00066 * 2 1 3 5 5 N 1.46501 * 109.47211 * 60.00031 * 4 2 1 6 6 C 1.35761 * 119.62370 * 269.73023 * 5 4 2 7 7 C 1.35353 * 120.70361 * 179.71967 * 6 5 4 8 8 C 1.40202 * 119.94207 * 0.52515 * 7 6 5 9 9 C 1.36396 * 119.26746 * 359.75274 * 8 7 6 10 10 C 1.34655 * 119.62241 * 90.00382 * 5 4 2 11 11 O 1.22060 * 119.98866 * 359.97438 * 10 5 4 12 12 C 1.50696 * 109.47123 * 120.00101 * 2 1 3 13 13 O 1.21287 * 120.00033 * 107.22702 * 12 2 1 14 14 N 1.34777 * 120.00125 * 287.23525 * 12 2 1 15 15 C 1.46923 * 120.63523 * 176.31714 * 14 12 2 16 16 C 1.53197 * 108.77514 * 233.58250 * 15 14 12 17 17 C 1.53036 * 109.31205 * 305.36235 * 16 15 14 18 18 C 1.53040 * 109.53813 * 61.36338 * 17 16 15 19 19 H 1.08998 * 109.52573 * 58.60570 * 18 17 16 20 20 C 1.50706 * 109.49754 * 178.68356 * 18 17 16 21 21 H 1.08008 * 119.99689 * 119.83758 * 20 18 17 22 22 C 1.37870 * 119.99929 * 299.84083 * 20 18 17 23 23 N 1.31514 * 120.00249 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99970 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46918 * 89.99806 * 24 22 20 26 26 H 1.48493 * 109.47066 * 209.99859 * 24 22 20 27 27 H 1.48500 * 109.47050 * 330.00104 * 24 22 20 28 28 C 1.46928 * 120.62691 * 356.28401 * 14 12 2 29 29 H 1.08995 * 109.47199 * 300.00270 * 1 2 3 30 30 H 1.09001 * 109.47071 * 59.99964 * 1 2 3 31 31 H 1.09002 * 109.47280 * 179.97438 * 1 2 3 32 32 H 0.96704 * 113.99929 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47372 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47190 * 300.00310 * 4 2 1 35 35 H 1.08001 * 119.65227 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.03073 * 180.28084 * 7 6 5 37 37 H 1.08000 * 120.36322 * 179.77074 * 8 7 6 38 38 H 1.07993 * 120.34706 * 180.02562 * 9 8 7 39 39 H 1.08991 * 109.59229 * 113.79075 * 15 14 12 40 40 H 1.09003 * 109.70022 * 353.43527 * 15 14 12 41 41 H 1.08999 * 109.49324 * 65.31230 * 16 15 14 42 42 H 1.08993 * 109.49883 * 185.40914 * 16 15 14 43 43 H 1.09001 * 109.45938 * 181.38429 * 17 16 15 44 44 H 1.09001 * 109.45880 * 301.34538 * 17 16 15 45 45 H 0.97001 * 120.00243 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58615 * 246.20145 * 28 14 12 47 47 H 1.08999 * 109.58603 * 6.63217 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 0.3671 -0.3993 -2.9966 7 6 -0.1075 0.2276 -4.0983 8 6 0.6324 1.2622 -4.6880 9 6 1.8250 1.6275 -4.1361 10 6 2.2857 0.9589 -2.9889 11 8 3.3510 1.2760 -2.4845 12 6 2.0323 -0.7104 1.2304 13 8 2.5277 -1.8133 1.1341 14 7 1.9309 -0.1203 2.4379 15 6 2.3418 -0.8319 3.6558 16 6 1.1808 -0.8102 4.6551 17 6 0.7427 0.6371 4.8904 18 6 0.2574 1.2457 3.5727 19 1 -0.5703 0.6543 3.1813 20 6 -0.2041 2.6603 3.8117 21 1 0.2744 3.4790 3.2947 22 6 -1.2369 2.9093 4.6904 23 7 -1.8199 1.9123 5.3195 24 14 -1.8085 4.6628 4.9872 25 1 -2.8806 5.0047 4.0182 26 1 -2.3343 4.7846 6.3706 27 1 -0.6648 5.5931 4.8086 28 6 1.4079 1.2472 2.5612 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.9704 1.4236 -0.0004 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 -0.2052 -1.1981 -2.5484 36 1 -1.0534 -0.0716 -4.5252 37 1 0.2620 1.7646 -5.5694 38 1 2.4090 2.4224 -4.5757 39 1 3.2094 -0.3376 4.0928 40 1 2.5940 -1.8638 3.4111 41 1 0.3447 -1.3827 4.2537 42 1 1.5043 -1.2502 5.5983 43 1 -0.0671 0.6574 5.6198 44 1 1.5861 1.2150 5.2683 45 1 -2.5468 2.0875 5.9374 46 1 2.1993 1.9111 2.9090 47 1 1.0422 1.5873 1.5923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:53 Heat of formation + Delta-G solvation = -80.013863 kcal Electronic energy + Delta-G solvation = -30659.422538 eV Core-core repulsion = 26614.925054 eV Total energy + Delta-G solvation = -4044.497485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65256 -40.12121 -37.31114 -36.91873 -36.69822 -34.51701 -33.34571 -31.82322 -31.07779 -30.08849 -29.98640 -27.37288 -25.36687 -24.96788 -23.90182 -23.33941 -22.20330 -21.29502 -19.96854 -18.83502 -18.01125 -17.39267 -16.99922 -16.65734 -16.35496 -16.06767 -15.73567 -15.33677 -14.70633 -14.62048 -14.54353 -14.25077 -13.94640 -13.78529 -13.24996 -12.97307 -12.79826 -12.57932 -12.50345 -12.36536 -12.24008 -12.16380 -11.99676 -11.92009 -11.71132 -11.54051 -11.08112 -11.01127 -10.77836 -10.72017 -10.28172 -10.16940 -9.97336 -9.93802 -9.80674 -9.63603 -9.00616 -8.80666 -8.43690 -8.04696 -7.98692 -6.06723 -4.14169 0.71498 1.79452 2.46193 2.72810 3.26460 3.33341 3.34622 3.38977 3.62811 4.12468 4.36579 4.41500 4.47558 4.53442 4.70296 4.73443 4.95251 5.09824 5.15142 5.23126 5.32078 5.51629 5.57673 5.69040 5.70410 5.72865 5.84597 5.87450 5.94068 6.04468 6.13821 6.20788 6.29839 6.35370 6.38109 6.49782 6.65819 6.78327 6.90194 6.99939 7.11538 7.30500 7.53764 7.64708 7.82953 7.87296 8.00658 8.04266 8.29876 8.42641 8.89720 9.51455 10.98560 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003870 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.191622 B = 7232.853709 C = 8538.484787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 O -0.528 6.528 4 C 0.080 3.920 5 N -0.485 5.485 6 C 0.137 3.863 7 C -0.238 4.238 8 C -0.018 4.018 9 C -0.243 4.243 10 C 0.520 3.480 11 O -0.550 6.550 12 C 0.491 3.509 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.111 3.889 16 C -0.133 4.133 17 C -0.114 4.114 18 C 0.040 3.960 19 H 0.028 0.972 20 C -0.514 4.514 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.888 5.888 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C 0.093 3.907 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.384 0.616 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.035 0.965 45 H 0.260 0.740 46 H 0.056 0.944 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -6.043 -15.564 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.067 3.933 3 O -0.335 6.335 4 C -0.042 4.042 5 N -0.195 5.195 6 C 0.010 3.990 7 C -0.261 4.261 8 C -0.040 4.040 9 C -0.265 4.265 10 C 0.322 3.678 11 O -0.433 6.433 12 C 0.277 3.723 13 O -0.443 6.443 14 N -0.313 5.313 15 C -0.012 4.012 16 C -0.171 4.171 17 C -0.152 4.152 18 C 0.021 3.979 19 H 0.046 0.954 20 C -0.553 4.553 21 H 0.076 0.924 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.028 4.028 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.878 -6.304 -15.089 16.605 hybrid contribution 0.029 0.854 0.357 0.926 sum 2.908 -5.451 -14.732 15.975 Atomic orbital electron populations 1.22040 0.90259 1.03154 1.05486 1.21564 0.97175 0.83634 0.90927 1.86636 1.27824 1.22925 1.96134 1.22436 1.02780 0.96470 0.82538 1.45386 1.18314 1.31128 1.24635 1.22006 0.85976 0.97596 0.93435 1.20620 1.03649 1.02198 0.99680 1.21413 0.92546 0.92936 0.97118 1.22110 0.99943 1.05510 0.98965 1.17074 0.85023 0.80043 0.85652 1.90911 1.22630 1.65232 1.64515 1.20965 0.79542 0.86306 0.85515 1.90652 1.46300 1.20867 1.86431 1.48323 1.60572 1.17166 1.05224 1.21645 0.97400 0.97187 0.84953 1.21986 0.97089 1.00819 0.97177 1.21650 1.00677 0.90753 1.02128 1.18994 0.91629 0.96605 0.90672 0.95406 1.21063 1.17038 0.92066 1.25088 0.92415 1.24924 0.96188 0.96933 0.95648 1.69872 1.24037 1.30497 1.28302 0.86605 0.79027 0.85050 0.77405 1.20674 1.21279 1.19853 1.22681 0.97720 0.78830 1.03552 0.88763 0.90921 0.90749 0.76619 0.87445 0.87335 0.82223 0.83855 0.85028 0.83693 0.92129 0.90341 0.92522 0.92486 0.88687 0.94609 0.92964 0.92561 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.87 37.16 0.29 -1.78 16 2 C 0.11 1.61 0.72 -91.77 -0.07 1.55 16 3 O -0.53 -8.26 8.83 -44.74 -0.40 -8.65 16 4 C 0.08 1.00 4.03 -4.04 -0.02 0.99 16 5 N -0.49 -5.64 2.33 -119.77 -0.28 -5.92 16 6 C 0.14 1.18 8.13 -16.84 -0.14 1.04 16 7 C -0.24 -1.80 10.01 -39.87 -0.40 -2.20 16 8 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 9 C -0.24 -2.73 9.99 -39.38 -0.39 -3.13 16 10 C 0.52 7.23 6.91 -15.45 -0.11 7.12 16 11 O -0.55 -9.39 15.38 -4.65 -0.07 -9.46 16 12 C 0.49 8.35 6.67 -10.99 -0.07 8.28 16 13 O -0.56 -10.45 15.42 5.55 0.09 -10.37 16 14 N -0.58 -10.49 2.97 -172.77 -0.51 -11.00 16 15 C 0.11 1.93 6.42 -3.71 -0.02 1.90 16 16 C -0.13 -2.46 6.08 -26.61 -0.16 -2.62 16 17 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 18 C 0.04 0.92 2.17 -91.65 -0.20 0.73 16 19 H 0.03 0.71 7.80 -51.93 -0.41 0.30 16 20 C -0.51 -13.27 8.56 -34.44 -0.29 -13.57 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 24 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.09 1.82 4.30 -3.71 -0.02 1.80 16 29 H 0.09 1.57 5.95 -51.93 -0.31 1.26 16 30 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.38 5.68 8.40 45.56 0.38 6.06 16 33 H 0.11 1.49 7.39 -51.93 -0.38 1.11 16 34 H 0.11 1.17 7.83 -51.93 -0.41 0.76 16 35 H 0.16 0.91 7.93 -52.49 -0.42 0.50 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.34 7.03 -51.93 -0.37 0.98 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.11 2.08 3.63 -51.93 -0.19 1.89 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -31.19 366.73 -8.34 -39.54 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.08 Total: 9.84 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.22 Total: -1.50 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.17 Total: -40.47 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.38 Total: -28.49 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.19 -8.34 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.478 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds