Wall clock time and date at job start Tue Mar 31 2020 18:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47244 * 240.00066 * 2 1 3 5 5 N 1.46501 * 109.47211 * 60.00031 * 4 2 1 6 6 C 1.35761 * 119.62370 * 269.73023 * 5 4 2 7 7 C 1.35353 * 120.70361 * 179.71967 * 6 5 4 8 8 C 1.40202 * 119.94207 * 0.52515 * 7 6 5 9 9 C 1.36396 * 119.26746 * 359.75274 * 8 7 6 10 10 C 1.34655 * 119.62241 * 90.00382 * 5 4 2 11 11 O 1.22060 * 119.98866 * 359.97438 * 10 5 4 12 12 C 1.50696 * 109.47123 * 120.00101 * 2 1 3 13 13 O 1.21287 * 120.00033 * 107.22702 * 12 2 1 14 14 N 1.34777 * 120.00125 * 287.23525 * 12 2 1 15 15 C 1.46923 * 120.63523 * 176.31714 * 14 12 2 16 16 C 1.53197 * 108.77514 * 233.58250 * 15 14 12 17 17 C 1.53036 * 109.31205 * 305.36235 * 16 15 14 18 18 C 1.53040 * 109.53813 * 61.36338 * 17 16 15 19 19 H 1.08998 * 109.52573 * 58.60570 * 18 17 16 20 20 C 1.50706 * 109.49754 * 178.68356 * 18 17 16 21 21 H 1.08008 * 119.99689 * 119.83758 * 20 18 17 22 22 C 1.37870 * 119.99929 * 299.84083 * 20 18 17 23 23 N 1.31514 * 120.00249 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99970 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46918 * 89.99806 * 24 22 20 26 26 H 1.48493 * 109.47066 * 209.99859 * 24 22 20 27 27 H 1.48500 * 109.47050 * 330.00104 * 24 22 20 28 28 C 1.46928 * 120.62691 * 356.28401 * 14 12 2 29 29 H 1.08995 * 109.47199 * 300.00270 * 1 2 3 30 30 H 1.09001 * 109.47071 * 59.99964 * 1 2 3 31 31 H 1.09002 * 109.47280 * 179.97438 * 1 2 3 32 32 H 0.96704 * 113.99929 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47372 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47190 * 300.00310 * 4 2 1 35 35 H 1.08001 * 119.65227 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.03073 * 180.28084 * 7 6 5 37 37 H 1.08000 * 120.36322 * 179.77074 * 8 7 6 38 38 H 1.07993 * 120.34706 * 180.02562 * 9 8 7 39 39 H 1.08991 * 109.59229 * 113.79075 * 15 14 12 40 40 H 1.09003 * 109.70022 * 353.43527 * 15 14 12 41 41 H 1.08999 * 109.49324 * 65.31230 * 16 15 14 42 42 H 1.08993 * 109.49883 * 185.40914 * 16 15 14 43 43 H 1.09001 * 109.45938 * 181.38429 * 17 16 15 44 44 H 1.09001 * 109.45880 * 301.34538 * 17 16 15 45 45 H 0.97001 * 120.00243 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58615 * 246.20145 * 28 14 12 47 47 H 1.08999 * 109.58603 * 6.63217 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 0.3671 -0.3993 -2.9966 7 6 -0.1075 0.2276 -4.0983 8 6 0.6324 1.2622 -4.6880 9 6 1.8250 1.6275 -4.1361 10 6 2.2857 0.9589 -2.9889 11 8 3.3510 1.2760 -2.4845 12 6 2.0323 -0.7104 1.2304 13 8 2.5277 -1.8133 1.1341 14 7 1.9309 -0.1203 2.4379 15 6 2.3418 -0.8319 3.6558 16 6 1.1808 -0.8102 4.6551 17 6 0.7427 0.6371 4.8904 18 6 0.2574 1.2457 3.5727 19 1 -0.5703 0.6543 3.1813 20 6 -0.2041 2.6603 3.8117 21 1 0.2744 3.4790 3.2947 22 6 -1.2369 2.9093 4.6904 23 7 -1.8199 1.9123 5.3195 24 14 -1.8085 4.6628 4.9872 25 1 -2.8806 5.0047 4.0182 26 1 -2.3343 4.7846 6.3706 27 1 -0.6648 5.5931 4.8086 28 6 1.4079 1.2472 2.5612 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.9704 1.4236 -0.0004 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 -0.2052 -1.1981 -2.5484 36 1 -1.0534 -0.0716 -4.5252 37 1 0.2620 1.7646 -5.5694 38 1 2.4090 2.4224 -4.5757 39 1 3.2094 -0.3376 4.0928 40 1 2.5940 -1.8638 3.4111 41 1 0.3447 -1.3827 4.2537 42 1 1.5043 -1.2502 5.5983 43 1 -0.0671 0.6574 5.6198 44 1 1.5861 1.2150 5.2683 45 1 -2.5468 2.0875 5.9374 46 1 2.1993 1.9111 2.9090 47 1 1.0422 1.5873 1.5923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:53 Heat of formation + Delta-G solvation = -99.697962 kcal Electronic energy + Delta-G solvation = -30660.276105 eV Core-core repulsion = 26614.925054 eV Total energy + Delta-G solvation = -4045.351051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.61051 -41.41784 -38.73427 -38.10031 -37.84997 -35.48120 -35.11705 -33.31162 -32.40608 -31.74394 -30.78325 -28.36253 -27.07777 -26.61170 -24.71679 -24.46431 -23.51139 -22.71358 -21.45156 -20.21598 -19.32159 -18.36572 -18.22150 -17.90140 -17.60573 -17.17346 -17.07128 -16.66647 -16.45403 -15.81678 -15.46047 -15.32808 -15.24706 -15.00714 -14.82147 -14.53907 -14.47728 -13.82927 -13.63226 -13.48873 -13.42397 -13.41145 -13.11187 -12.92271 -12.88051 -12.85150 -12.64219 -12.58471 -12.56444 -12.07720 -11.87878 -11.79261 -11.59606 -11.26349 -11.09299 -10.89657 -10.80524 -10.44123 -10.26285 -9.55451 -8.88149 -8.07951 -6.21775 -0.02117 1.01815 1.35168 1.42268 1.44694 1.53032 1.54373 2.07146 2.45111 2.75038 2.99009 3.19650 3.27677 3.48521 3.53737 3.84314 3.94735 4.11590 4.16393 4.20003 4.26843 4.32615 4.43078 4.50388 4.54698 4.57481 4.58684 4.60543 4.64268 4.81088 4.89503 4.99230 5.10511 5.11953 5.13492 5.24927 5.25952 5.41492 5.45607 5.59663 5.63949 5.71066 5.94540 6.09835 6.15771 6.29506 6.35142 6.47915 6.87911 6.99587 7.08539 7.46542 8.95698 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003870 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.191622 B = 7232.853709 C = 8538.484787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.116 3.884 3 O -0.539 6.539 4 C 0.090 3.910 5 N -0.484 5.484 6 C 0.123 3.877 7 C -0.228 4.228 8 C 0.003 3.997 9 C -0.280 4.280 10 C 0.501 3.499 11 O -0.602 6.602 12 C 0.492 3.508 13 O -0.574 6.574 14 N -0.589 5.589 15 C 0.112 3.888 16 C -0.121 4.121 17 C -0.109 4.109 18 C 0.042 3.958 19 H 0.000 1.000 20 C -0.530 4.530 21 H 0.053 0.947 22 C 0.021 3.979 23 N -0.913 5.913 24 Si 0.948 3.052 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.271 1.271 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.385 0.615 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.194 0.806 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -6.708 -17.305 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.072 3.928 3 O -0.346 6.346 4 C -0.033 4.033 5 N -0.193 5.193 6 C -0.003 4.003 7 C -0.250 4.250 8 C -0.019 4.019 9 C -0.302 4.302 10 C 0.306 3.694 11 O -0.490 6.490 12 C 0.279 3.721 13 O -0.455 6.455 14 N -0.319 5.319 15 C -0.011 4.011 16 C -0.159 4.159 17 C -0.147 4.147 18 C 0.023 3.977 19 H 0.019 0.981 20 C -0.568 4.568 21 H 0.071 0.929 22 C -0.178 4.178 23 N -0.552 5.552 24 Si 0.774 3.226 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.195 1.195 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.235 0.765 33 H 0.106 0.894 34 H 0.149 0.851 35 H 0.211 0.789 36 H 0.199 0.801 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.627 -6.988 -16.858 18.321 hybrid contribution 0.324 1.012 0.834 1.351 sum 1.951 -5.976 -16.023 17.212 Atomic orbital electron populations 1.22022 0.89377 1.04441 1.04534 1.21614 0.97625 0.83027 0.90579 1.86606 1.28051 1.23894 1.96095 1.22271 1.01785 0.97201 0.82091 1.45329 1.19187 1.30609 1.24170 1.22709 0.84968 0.98602 0.94000 1.21162 1.04447 1.00781 0.98626 1.21859 0.90792 0.92064 0.97154 1.22126 1.01904 1.06768 0.99360 1.17552 0.84859 0.80588 0.86386 1.90867 1.24807 1.67114 1.66163 1.21414 0.78789 0.86120 0.85813 1.90640 1.46741 1.21498 1.86658 1.48319 1.60883 1.16619 1.06056 1.21676 0.97121 0.97771 0.84494 1.21853 0.97233 0.98101 0.98754 1.21478 0.99334 0.93179 1.00689 1.18897 0.91966 0.94931 0.91939 0.98142 1.21389 1.17199 0.93293 1.24946 0.92890 1.25597 0.96433 1.00231 0.95580 1.69999 1.24375 1.32079 1.28748 0.85709 0.78574 0.81063 0.77224 1.20218 1.21098 1.19541 1.22311 0.96225 0.79783 1.02580 0.92013 0.89428 0.88367 0.76466 0.89353 0.85132 0.78941 0.80089 0.81650 0.83943 0.90951 0.89495 0.93561 0.90141 0.91787 0.94994 0.93064 0.93076 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 7.87 71.98 0.57 -3.22 16 2 C 0.12 3.27 0.72 -11.54 -0.01 3.26 16 3 O -0.54 -17.11 8.83 -139.88 -1.24 -18.34 16 4 C 0.09 2.15 4.03 86.38 0.35 2.50 16 5 N -0.48 -10.59 2.33 -650.97 -1.52 -12.11 16 6 C 0.12 1.69 8.13 83.42 0.68 2.37 16 7 C -0.23 -2.45 10.01 22.08 0.22 -2.23 16 8 C 0.00 0.04 10.10 22.32 0.23 0.27 16 9 C -0.28 -6.10 9.99 22.40 0.22 -5.87 16 10 C 0.50 14.01 6.91 84.82 0.59 14.59 16 11 O -0.60 -21.59 15.38 3.59 0.06 -21.53 16 12 C 0.49 16.40 6.67 87.66 0.58 16.99 16 13 O -0.57 -20.69 15.42 -3.05 -0.05 -20.74 16 14 N -0.59 -21.03 2.97 -818.89 -2.43 -23.46 16 15 C 0.11 3.77 6.42 86.36 0.55 4.33 16 16 C -0.12 -4.44 6.08 30.67 0.19 -4.25 16 17 C -0.11 -4.89 4.96 30.62 0.15 -4.74 16 18 C 0.04 1.97 2.17 -11.46 -0.02 1.95 16 19 H 0.00 0.02 7.80 -2.39 -0.02 0.01 16 20 C -0.53 -27.85 8.56 25.60 0.22 -27.63 16 21 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 22 C 0.02 1.10 5.30 84.65 0.45 1.55 16 23 N -0.91 -50.58 11.32 21.44 0.24 -50.33 16 24 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 C 0.11 4.47 4.30 86.36 0.37 4.84 16 29 H 0.06 2.04 5.95 -2.39 -0.01 2.03 16 30 H 0.09 1.98 6.30 -2.39 -0.02 1.96 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.39 11.90 8.40 -74.05 -0.62 11.28 16 33 H 0.09 2.49 7.39 -2.39 -0.02 2.48 16 34 H 0.13 2.51 7.83 -2.39 -0.02 2.49 16 35 H 0.19 1.29 7.93 -2.91 -0.02 1.27 16 36 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.84 7.03 -2.39 -0.02 2.82 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.06 3.30 6.05 -2.39 -0.01 3.29 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.11 4.34 3.63 -2.39 -0.01 4.33 16 Total: -1.00 -70.24 366.73 2.79 -67.44 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.37 Total: 29.95 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.33 Total: 4.70 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.71 Total: -85.91 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -1.23 Total: -60.61 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -70.24 2.79 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.255 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds