Wall clock time and date at job start Tue Mar 31 2020 18:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46827 * 2 1 4 4 C 1.52995 * 109.47163 * 239.99972 * 2 1 3 5 5 N 1.46499 * 109.46929 * 60.00023 * 4 2 1 6 6 C 1.35765 * 119.62523 * 269.72292 * 5 4 2 7 7 C 1.35353 * 120.70473 * 179.76314 * 6 5 4 8 8 C 1.40199 * 119.94470 * 0.51267 * 7 6 5 9 9 C 1.36404 * 119.26461 * 359.74943 * 8 7 6 10 10 C 1.34664 * 119.62771 * 90.00402 * 5 4 2 11 11 O 1.22062 * 119.98200 * 359.97438 * 10 5 4 12 12 C 1.50694 * 109.47115 * 119.99824 * 2 1 3 13 13 O 1.21284 * 120.00041 * 107.23633 * 12 2 1 14 14 N 1.34778 * 120.00423 * 287.23329 * 12 2 1 15 15 C 1.46932 * 120.62809 * 356.29608 * 14 12 2 16 16 C 1.53190 * 108.77398 * 126.41020 * 15 14 12 17 17 C 1.53037 * 109.31441 * 54.63686 * 16 15 14 18 18 C 1.53041 * 109.53591 * 298.63227 * 17 16 15 19 19 H 1.09001 * 109.52413 * 301.39720 * 18 17 16 20 20 C 1.50703 * 109.49693 * 181.31802 * 18 17 16 21 21 H 1.07995 * 119.99902 * 240.16049 * 20 18 17 22 22 C 1.37873 * 119.99990 * 59.88458 * 20 18 17 23 23 N 1.31513 * 120.00183 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 120.00134 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46937 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47028 * 119.99670 * 24 22 20 27 27 H 1.48490 * 109.47182 * 240.00143 * 24 22 20 28 28 C 1.46923 * 120.63586 * 176.31308 * 14 12 2 29 29 H 1.09000 * 109.46909 * 299.99818 * 1 2 3 30 30 H 1.08993 * 109.46686 * 60.00019 * 1 2 3 31 31 H 1.08999 * 109.46603 * 179.97438 * 1 2 3 32 32 H 0.96705 * 114.00123 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47007 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47127 * 299.99972 * 4 2 1 35 35 H 1.08003 * 119.64597 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.02984 * 180.27650 * 7 6 5 37 37 H 1.07997 * 120.36441 * 179.76639 * 8 7 6 38 38 H 1.08002 * 120.34106 * 180.02562 * 9 8 7 39 39 H 1.08998 * 109.58416 * 246.19955 * 15 14 12 40 40 H 1.09004 * 109.58687 * 6.62216 * 15 14 12 41 41 H 1.09005 * 109.49457 * 174.58814 * 16 15 14 42 42 H 1.09002 * 109.50103 * 294.64944 * 16 15 14 43 43 H 1.09004 * 109.46195 * 178.61039 * 17 16 15 44 44 H 1.09005 * 109.46100 * 58.65226 * 17 16 15 45 45 H 0.97002 * 120.00007 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.59005 * 113.79696 * 28 14 12 47 47 H 1.09004 * 109.70009 * 353.44809 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4453 6 6 0.3671 -0.3994 -2.9966 7 6 -0.1071 0.2270 -4.0988 8 6 0.6330 1.2613 -4.6888 9 6 1.8255 1.6269 -4.1366 10 6 2.2856 0.9590 -2.9889 11 8 3.3509 1.2761 -2.4845 12 6 2.0324 -0.7103 1.2304 13 8 2.5279 -1.8131 1.1342 14 7 1.9310 -0.1202 2.4379 15 6 1.4078 1.2472 2.5613 16 6 0.2573 1.2456 3.5727 17 6 0.7427 0.6371 4.8904 18 6 1.1809 -0.8102 4.6550 19 1 0.3450 -1.3833 4.2540 20 6 1.6282 -1.4187 5.9592 21 1 2.6387 -1.7845 6.0659 22 6 0.7491 -1.5032 7.0179 23 7 -0.4800 -1.0532 6.8896 24 14 1.3037 -2.2568 8.6347 25 1 2.7214 -2.6841 8.5211 26 1 1.1748 -1.2510 9.7196 27 1 0.4559 -3.4348 8.9484 28 6 2.3419 -0.8319 3.6559 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 2.9703 1.4237 0.0004 33 1 3.1301 -0.7208 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 -0.2050 -1.1983 -2.5483 36 1 -1.0529 -0.0723 -4.5257 37 1 0.2629 1.7631 -5.5706 38 1 2.4096 2.4216 -4.5766 39 1 2.1992 1.9112 2.9090 40 1 1.0421 1.5873 1.5923 41 1 -0.0765 2.2687 3.7456 42 1 -0.5704 0.6541 3.1814 43 1 -0.0671 0.6573 5.6198 44 1 1.5861 1.2150 5.2684 45 1 -1.0986 -1.1130 7.6343 46 1 3.2095 -0.3375 4.0929 47 1 2.5941 -1.8637 3.4111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:56 Heat of formation + Delta-G solvation = -79.782356 kcal Electronic energy + Delta-G solvation = -30310.483951 eV Core-core repulsion = 26265.996505 eV Total energy + Delta-G solvation = -4044.487446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75419 -40.15924 -37.37482 -37.01988 -36.71549 -34.64217 -33.43467 -31.56819 -31.33787 -30.16585 -30.04892 -27.51356 -25.39529 -25.03725 -24.00465 -23.35758 -21.97972 -21.64976 -19.97639 -18.87935 -18.06179 -17.49466 -17.08451 -16.72008 -16.44134 -16.26001 -15.54220 -15.42508 -14.89766 -14.67328 -14.60238 -14.34535 -13.93591 -13.66129 -13.49502 -12.90007 -12.81408 -12.70378 -12.64571 -12.50702 -12.34144 -12.20352 -12.09505 -11.93200 -11.85282 -11.70802 -11.17311 -11.01650 -10.79152 -10.71200 -10.28032 -10.23076 -10.04611 -9.93589 -9.83761 -9.51492 -9.13898 -8.81406 -8.42793 -8.15201 -7.97662 -6.05943 -4.13243 0.60916 1.68829 2.36688 2.73334 3.25991 3.31270 3.34727 3.39392 3.54795 3.96116 4.30218 4.36912 4.39148 4.41606 4.59599 4.62802 4.82893 4.99339 5.04987 5.22661 5.23925 5.41633 5.46308 5.49859 5.60724 5.70016 5.73940 5.83709 5.90361 5.92349 6.03547 6.16738 6.27734 6.31681 6.35982 6.47676 6.61660 6.78090 6.88644 6.89871 7.12643 7.27604 7.38262 7.65150 7.84465 7.90491 7.92520 8.03564 8.30648 8.44481 8.90383 9.51982 10.99376 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028282 B = 0.002746 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.776776 B =10194.055352 C =10282.761375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 O -0.535 6.535 4 C 0.079 3.921 5 N -0.485 5.485 6 C 0.137 3.863 7 C -0.239 4.239 8 C -0.018 4.018 9 C -0.244 4.244 10 C 0.519 3.481 11 O -0.550 6.550 12 C 0.488 3.512 13 O -0.550 6.550 14 N -0.583 5.583 15 C 0.092 3.908 16 C -0.136 4.136 17 C -0.113 4.113 18 C 0.042 3.958 19 H 0.028 0.972 20 C -0.514 4.514 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.113 3.887 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.387 0.613 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.035 0.965 45 H 0.260 0.740 46 H 0.056 0.944 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 4.904 -21.437 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.065 3.935 3 O -0.343 6.343 4 C -0.043 4.043 5 N -0.195 5.195 6 C 0.009 3.991 7 C -0.262 4.262 8 C -0.040 4.040 9 C -0.266 4.266 10 C 0.321 3.679 11 O -0.433 6.433 12 C 0.273 3.727 13 O -0.430 6.430 14 N -0.313 5.313 15 C -0.030 4.030 16 C -0.174 4.174 17 C -0.151 4.151 18 C 0.023 3.977 19 H 0.047 0.953 20 C -0.553 4.553 21 H 0.076 0.924 22 C -0.138 4.138 23 N -0.527 5.527 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.007 4.007 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.237 0.763 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.042 4.675 -20.993 21.604 hybrid contribution 0.613 -0.454 1.006 1.262 sum -1.429 4.221 -19.987 20.478 Atomic orbital electron populations 1.22009 0.90560 1.03510 1.04553 1.21624 0.96910 0.83484 0.91516 1.86521 1.28214 1.23344 1.96206 1.22449 1.02982 0.96593 0.82296 1.45416 1.18283 1.31094 1.24690 1.22028 0.85991 0.97519 0.93521 1.20626 1.03728 1.02233 0.99599 1.21420 0.92567 0.92937 0.97085 1.22116 0.99895 1.05577 0.98991 1.17081 0.85011 0.80083 0.85676 1.90918 1.22531 1.65298 1.64505 1.20865 0.80041 0.86532 0.85257 1.90690 1.45608 1.20542 1.86114 1.48287 1.60666 1.15965 1.06430 1.22257 0.96946 0.82036 1.01792 1.22034 0.97091 1.00275 0.98012 1.21641 1.01638 0.96885 0.94978 1.18958 0.92533 0.93443 0.92760 0.95346 1.21110 0.98153 1.39463 0.96548 0.92436 1.24934 0.94851 0.95265 0.98755 1.69879 1.04742 1.46418 1.31680 0.86522 0.78882 0.78953 0.83581 1.19724 1.21009 1.21011 1.22078 0.99084 0.96511 0.83068 0.89807 0.90919 0.90313 0.76252 0.87276 0.87126 0.82184 0.83842 0.85012 0.83685 0.92151 0.87667 0.92498 0.92614 0.88652 0.94615 0.93013 0.92546 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.87 37.16 0.29 -1.37 16 2 C 0.11 1.41 0.72 -91.77 -0.07 1.34 16 3 O -0.54 -7.02 8.83 -44.74 -0.40 -7.42 16 4 C 0.08 0.92 4.04 -4.05 -0.02 0.91 16 5 N -0.49 -5.04 2.33 -119.77 -0.28 -5.32 16 6 C 0.14 1.00 8.13 -16.84 -0.14 0.87 16 7 C -0.24 -1.49 10.01 -39.87 -0.40 -1.89 16 8 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 9 C -0.24 -2.41 9.99 -39.38 -0.39 -2.81 16 10 C 0.52 6.55 6.91 -15.45 -0.11 6.44 16 11 O -0.55 -8.74 15.38 -4.65 -0.07 -8.81 16 12 C 0.49 8.26 6.67 -10.99 -0.07 8.18 16 13 O -0.55 -10.86 15.42 5.55 0.09 -10.78 16 14 N -0.58 -10.49 2.97 -172.77 -0.51 -11.00 16 15 C 0.09 1.47 5.07 -3.71 -0.02 1.45 16 16 C -0.14 -2.42 6.00 -26.61 -0.16 -2.58 16 17 C -0.11 -2.52 4.96 -26.69 -0.13 -2.66 16 18 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.51 -13.76 8.57 -34.44 -0.30 -14.06 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.61 11.30 55.43 0.63 -23.98 16 24 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.11 2.42 5.64 -3.71 -0.02 2.39 16 29 H 0.08 1.04 5.95 -51.93 -0.31 0.73 16 30 H 0.07 0.70 6.30 -51.93 -0.33 0.37 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.39 4.97 8.40 45.56 0.38 5.35 16 33 H 0.11 1.46 7.39 -51.93 -0.38 1.07 16 34 H 0.11 1.14 7.83 -51.93 -0.41 0.74 16 35 H 0.16 0.74 7.93 -52.48 -0.42 0.32 16 36 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.11 1.51 3.63 -51.93 -0.19 1.32 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.01 7.80 -51.93 -0.41 0.61 16 43 H 0.10 2.41 6.03 -51.93 -0.31 2.10 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.08 1.78 7.03 -51.93 -0.37 1.41 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -32.16 366.69 -8.35 -40.51 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.08 Total: 7.24 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.23 Total: -1.88 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.17 Total: -40.31 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.38 Total: -27.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.16 -8.35 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.275 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds