Wall clock time and date at job start Tue Mar 31 2020 18:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46827 * 2 1 4 4 C 1.52995 * 109.47163 * 239.99972 * 2 1 3 5 5 N 1.46499 * 109.46929 * 60.00023 * 4 2 1 6 6 C 1.35765 * 119.62523 * 269.72292 * 5 4 2 7 7 C 1.35353 * 120.70473 * 179.76314 * 6 5 4 8 8 C 1.40199 * 119.94470 * 0.51267 * 7 6 5 9 9 C 1.36404 * 119.26461 * 359.74943 * 8 7 6 10 10 C 1.34664 * 119.62771 * 90.00402 * 5 4 2 11 11 O 1.22062 * 119.98200 * 359.97438 * 10 5 4 12 12 C 1.50694 * 109.47115 * 119.99824 * 2 1 3 13 13 O 1.21284 * 120.00041 * 107.23633 * 12 2 1 14 14 N 1.34778 * 120.00423 * 287.23329 * 12 2 1 15 15 C 1.46932 * 120.62809 * 356.29608 * 14 12 2 16 16 C 1.53190 * 108.77398 * 126.41020 * 15 14 12 17 17 C 1.53037 * 109.31441 * 54.63686 * 16 15 14 18 18 C 1.53041 * 109.53591 * 298.63227 * 17 16 15 19 19 H 1.09001 * 109.52413 * 301.39720 * 18 17 16 20 20 C 1.50703 * 109.49693 * 181.31802 * 18 17 16 21 21 H 1.07995 * 119.99902 * 240.16049 * 20 18 17 22 22 C 1.37873 * 119.99990 * 59.88458 * 20 18 17 23 23 N 1.31513 * 120.00183 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 120.00134 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46937 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47028 * 119.99670 * 24 22 20 27 27 H 1.48490 * 109.47182 * 240.00143 * 24 22 20 28 28 C 1.46923 * 120.63586 * 176.31308 * 14 12 2 29 29 H 1.09000 * 109.46909 * 299.99818 * 1 2 3 30 30 H 1.08993 * 109.46686 * 60.00019 * 1 2 3 31 31 H 1.08999 * 109.46603 * 179.97438 * 1 2 3 32 32 H 0.96705 * 114.00123 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47007 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47127 * 299.99972 * 4 2 1 35 35 H 1.08003 * 119.64597 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.02984 * 180.27650 * 7 6 5 37 37 H 1.07997 * 120.36441 * 179.76639 * 8 7 6 38 38 H 1.08002 * 120.34106 * 180.02562 * 9 8 7 39 39 H 1.08998 * 109.58416 * 246.19955 * 15 14 12 40 40 H 1.09004 * 109.58687 * 6.62216 * 15 14 12 41 41 H 1.09005 * 109.49457 * 174.58814 * 16 15 14 42 42 H 1.09002 * 109.50103 * 294.64944 * 16 15 14 43 43 H 1.09004 * 109.46195 * 178.61039 * 17 16 15 44 44 H 1.09005 * 109.46100 * 58.65226 * 17 16 15 45 45 H 0.97002 * 120.00007 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.59005 * 113.79696 * 28 14 12 47 47 H 1.09004 * 109.70009 * 353.44809 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4453 6 6 0.3671 -0.3994 -2.9966 7 6 -0.1071 0.2270 -4.0988 8 6 0.6330 1.2613 -4.6888 9 6 1.8255 1.6269 -4.1366 10 6 2.2856 0.9590 -2.9889 11 8 3.3509 1.2761 -2.4845 12 6 2.0324 -0.7103 1.2304 13 8 2.5279 -1.8131 1.1342 14 7 1.9310 -0.1202 2.4379 15 6 1.4078 1.2472 2.5613 16 6 0.2573 1.2456 3.5727 17 6 0.7427 0.6371 4.8904 18 6 1.1809 -0.8102 4.6550 19 1 0.3450 -1.3833 4.2540 20 6 1.6282 -1.4187 5.9592 21 1 2.6387 -1.7845 6.0659 22 6 0.7491 -1.5032 7.0179 23 7 -0.4800 -1.0532 6.8896 24 14 1.3037 -2.2568 8.6347 25 1 2.7214 -2.6841 8.5211 26 1 1.1748 -1.2510 9.7196 27 1 0.4559 -3.4348 8.9484 28 6 2.3419 -0.8319 3.6559 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 2.9703 1.4237 0.0004 33 1 3.1301 -0.7208 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 -0.2050 -1.1983 -2.5483 36 1 -1.0529 -0.0723 -4.5257 37 1 0.2629 1.7631 -5.5706 38 1 2.4096 2.4216 -4.5766 39 1 2.1992 1.9112 2.9090 40 1 1.0421 1.5873 1.5923 41 1 -0.0765 2.2687 3.7456 42 1 -0.5704 0.6541 3.1814 43 1 -0.0671 0.6573 5.6198 44 1 1.5861 1.2150 5.2684 45 1 -1.0986 -1.1130 7.6343 46 1 3.2095 -0.3375 4.0929 47 1 2.5941 -1.8637 3.4111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:55 Heat of formation + Delta-G solvation = -100.771770 kcal Electronic energy + Delta-G solvation = -30311.394120 eV Core-core repulsion = 26265.996505 eV Total energy + Delta-G solvation = -4045.397615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61717 -41.42029 -38.76501 -38.08585 -37.85109 -35.56948 -35.14743 -33.06891 -32.60064 -31.75378 -30.78068 -28.38848 -27.17549 -26.62009 -24.69940 -24.36255 -23.42347 -22.93046 -21.42053 -20.22093 -19.33473 -18.42012 -18.22019 -17.88891 -17.71751 -17.09952 -16.99041 -16.68711 -16.53881 -15.86850 -15.41921 -15.29795 -15.21319 -14.98084 -14.94070 -14.58084 -14.44862 -13.81485 -13.69909 -13.54163 -13.44854 -13.36016 -13.13117 -12.97929 -12.93172 -12.86331 -12.63865 -12.59019 -12.56724 -12.12235 -11.89523 -11.78152 -11.54218 -11.26974 -11.10237 -10.90079 -10.85013 -10.50260 -10.29743 -9.56873 -8.88142 -8.12349 -6.27310 -0.01774 1.02125 1.36752 1.38500 1.41231 1.50888 1.52902 2.06245 2.42041 2.74847 2.94910 3.14190 3.24219 3.47280 3.52284 3.84608 3.93973 4.12895 4.17309 4.24625 4.27228 4.33275 4.43783 4.48078 4.53925 4.57528 4.59397 4.61345 4.66836 4.81508 4.85726 4.99267 4.99685 5.11633 5.12621 5.25790 5.28625 5.42709 5.46502 5.51924 5.59770 5.71392 5.90540 6.09727 6.15792 6.26469 6.32440 6.48263 6.81182 7.01223 7.08965 7.40827 8.91274 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028282 B = 0.002746 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.776776 B =10194.055352 C =10282.761375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 O -0.535 6.535 4 C 0.087 3.913 5 N -0.483 5.483 6 C 0.122 3.878 7 C -0.225 4.225 8 C 0.004 3.996 9 C -0.278 4.278 10 C 0.502 3.498 11 O -0.603 6.603 12 C 0.485 3.515 13 O -0.581 6.581 14 N -0.588 5.588 15 C 0.100 3.900 16 C -0.127 4.127 17 C -0.106 4.106 18 C 0.045 3.955 19 H -0.007 1.007 20 C -0.538 4.538 21 H 0.050 0.950 22 C 0.019 3.981 23 N -0.911 5.911 24 Si 0.954 3.046 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.281 1.281 28 C 0.126 3.874 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.388 0.612 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.192 0.808 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.056 0.944 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 5.426 -23.435 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.078 3.922 3 O -0.343 6.343 4 C -0.037 4.037 5 N -0.192 5.192 6 C -0.004 4.004 7 C -0.248 4.248 8 C -0.018 4.018 9 C -0.300 4.300 10 C 0.307 3.693 11 O -0.490 6.490 12 C 0.272 3.728 13 O -0.462 6.462 14 N -0.319 5.319 15 C -0.022 4.022 16 C -0.165 4.165 17 C -0.145 4.145 18 C 0.026 3.974 19 H 0.011 0.989 20 C -0.576 4.576 21 H 0.069 0.931 22 C -0.181 4.181 23 N -0.550 5.550 24 Si 0.779 3.221 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.207 1.207 28 C 0.004 3.996 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.239 0.761 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.209 0.791 36 H 0.199 0.801 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.957 5.205 -23.026 23.936 hybrid contribution 1.116 -0.668 1.545 2.020 sum -2.841 4.537 -21.481 22.138 Atomic orbital electron populations 1.22057 0.88603 1.04638 1.05083 1.21554 0.98028 0.82964 0.89704 1.86490 1.28423 1.23367 1.95995 1.22248 1.01729 0.97213 0.82480 1.45323 1.19188 1.30575 1.24091 1.22695 0.84970 0.98530 0.94166 1.21154 1.04482 1.00731 0.98395 1.21860 0.90800 0.92029 0.97098 1.22119 1.01809 1.06772 0.99267 1.17563 0.84793 0.80575 0.86404 1.90877 1.24734 1.67215 1.66169 1.21681 0.78953 0.86233 0.85955 1.90668 1.46730 1.22169 1.86663 1.48306 1.61078 1.16621 1.05851 1.22352 0.96437 0.80939 1.02442 1.21938 0.97504 1.01235 0.95820 1.21443 1.00333 0.95888 0.96795 1.18836 0.92165 0.94017 0.92358 0.98853 1.21448 0.98051 1.40062 0.98083 0.93126 1.25654 0.94960 0.95662 1.01795 1.69999 1.05489 1.46956 1.32551 0.85574 0.78441 0.78231 0.79815 1.19493 1.20296 1.20655 1.21635 0.97940 0.95964 0.84065 0.90849 0.88705 0.88982 0.76136 0.89684 0.85693 0.79127 0.80108 0.81628 0.83897 0.91350 0.85320 0.89856 0.93006 0.91710 0.94975 0.92883 0.92535 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 7.87 71.98 0.57 -2.33 16 2 C 0.12 3.02 0.72 -11.54 -0.01 3.01 16 3 O -0.53 -13.53 8.83 -139.89 -1.24 -14.77 16 4 C 0.09 1.95 4.04 86.38 0.35 2.30 16 5 N -0.48 -9.25 2.33 -650.98 -1.52 -10.77 16 6 C 0.12 1.33 8.13 83.42 0.68 2.01 16 7 C -0.23 -1.72 10.01 22.08 0.22 -1.50 16 8 C 0.00 0.04 10.10 22.32 0.23 0.26 16 9 C -0.28 -5.15 9.99 22.40 0.22 -4.92 16 10 C 0.50 12.48 6.91 84.82 0.59 13.06 16 11 O -0.60 -19.93 15.38 3.58 0.05 -19.87 16 12 C 0.48 16.42 6.67 87.66 0.58 17.01 16 13 O -0.58 -23.41 15.42 -3.04 -0.05 -23.46 16 14 N -0.59 -21.27 2.97 -818.90 -2.43 -23.70 16 15 C 0.10 3.06 5.07 86.36 0.44 3.50 16 16 C -0.13 -4.39 6.00 30.67 0.18 -4.21 16 17 C -0.11 -4.82 4.96 30.62 0.15 -4.66 16 18 C 0.05 2.27 2.25 -11.46 -0.03 2.24 16 19 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 20 C -0.54 -29.69 8.57 25.60 0.22 -29.47 16 21 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 22 C 0.02 1.02 5.30 84.65 0.45 1.47 16 23 N -0.91 -51.46 11.30 21.45 0.24 -51.21 16 24 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 C 0.13 5.56 5.64 86.36 0.49 6.04 16 29 H 0.07 1.64 5.95 -2.39 -0.01 1.63 16 30 H 0.09 1.47 6.30 -2.39 -0.02 1.45 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.39 10.03 8.40 -74.05 -0.62 9.40 16 33 H 0.08 2.36 7.39 -2.39 -0.02 2.34 16 34 H 0.13 2.42 7.83 -2.39 -0.02 2.40 16 35 H 0.19 0.84 7.93 -2.91 -0.02 0.82 16 36 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 37 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.13 3.42 3.63 -2.38 -0.01 3.41 16 41 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.05 1.84 7.80 -2.39 -0.02 1.82 16 43 H 0.06 3.35 6.03 -2.38 -0.01 3.33 16 44 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.06 2.76 7.03 -2.38 -0.02 2.74 16 Total: -1.00 -74.11 366.69 2.79 -71.32 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.37 Total: 23.16 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.33 Total: 3.81 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.71 Total: -85.68 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -1.23 Total: -58.10 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.11 2.79 -71.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.451 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds