Wall clock time and date at job start Tue Mar 31 2020 18:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47108 * 2 1 4 4 C 1.52996 * 109.47488 * 120.00050 * 2 1 3 5 5 N 1.46500 * 109.47093 * 305.00296 * 4 2 1 6 6 C 1.35759 * 119.63011 * 89.99594 * 5 4 2 7 7 C 1.35349 * 120.70394 * 179.97438 * 6 5 4 8 8 C 1.40193 * 119.94673 * 0.02805 * 7 6 5 9 9 C 1.36394 * 119.26775 * 359.97438 * 8 7 6 10 10 C 1.34662 * 119.61858 * 270.30357 * 5 4 2 11 11 O 1.22059 * 119.99299 * 359.97438 * 10 5 4 12 12 C 1.50701 * 109.46885 * 240.00154 * 2 1 3 13 13 O 1.21276 * 120.00269 * 253.03836 * 12 2 1 14 14 N 1.34777 * 119.99914 * 73.04251 * 12 2 1 15 15 C 1.46930 * 120.62872 * 183.57782 * 14 12 2 16 16 C 1.53630 * 108.53855 * 126.36938 * 15 14 12 17 17 C 1.53039 * 109.24440 * 54.85842 * 16 15 14 18 18 C 1.53035 * 109.53586 * 298.50888 * 17 16 15 19 19 H 1.09003 * 109.50279 * 301.41176 * 18 17 16 20 20 C 1.50702 * 109.49730 * 181.31763 * 18 17 16 21 21 H 1.07997 * 119.99986 * 275.49888 * 20 18 17 22 22 C 1.37879 * 120.00022 * 95.49774 * 20 18 17 23 23 N 1.31511 * 119.99903 * 174.38830 * 22 20 18 24 24 Si 1.86802 * 119.99789 * 354.39384 * 22 20 18 25 25 H 1.48497 * 109.47310 * 93.84827 * 24 22 20 26 26 H 1.48498 * 109.46728 * 213.84447 * 24 22 20 27 27 H 1.48492 * 109.47425 * 333.84561 * 24 22 20 28 28 C 1.46922 * 120.63343 * 3.85900 * 14 12 2 29 29 H 1.09006 * 109.46728 * 300.00109 * 1 2 3 30 30 H 1.08996 * 109.47520 * 59.99560 * 1 2 3 31 31 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 32 32 H 0.96703 * 114.00382 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47517 * 184.99648 * 4 2 1 34 34 H 1.09007 * 109.47000 * 64.99828 * 4 2 1 35 35 H 1.08003 * 119.64687 * 0.02570 * 6 5 4 36 36 H 1.07997 * 120.02067 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.36137 * 180.02562 * 8 7 6 38 38 H 1.08003 * 120.34871 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.58535 * 246.20074 * 15 14 12 40 40 H 1.08998 * 109.58800 * 6.62543 * 15 14 12 41 41 H 1.08997 * 109.63377 * 294.85859 * 16 15 14 42 42 H 1.09007 * 109.45513 * 174.73942 * 16 15 14 43 43 H 1.08991 * 109.45989 * 178.48997 * 17 16 15 44 44 H 1.08998 * 109.46044 * 58.52922 * 17 16 15 45 45 H 0.97000 * 119.99664 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.58470 * 353.37404 * 28 14 12 47 47 H 1.09006 * 109.59220 * 113.65544 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4559 -0.1037 2.4423 6 6 0.2769 -0.5681 2.9296 7 6 -0.2820 -0.0140 4.0307 8 6 0.3577 1.0514 4.6796 9 6 1.5421 1.5166 4.1887 10 6 2.0915 0.9223 3.0397 11 8 3.1483 1.3321 2.5868 12 6 2.0322 -0.7104 -1.2305 13 8 2.5232 -1.8152 -1.1350 14 7 1.9359 -0.1179 -2.4372 15 6 2.3489 -0.8284 -3.6552 16 6 1.1838 -0.7999 -4.6562 17 6 0.7551 0.6505 -4.8899 18 6 0.2722 1.2602 -3.5719 19 1 -0.5595 0.6730 -3.1825 20 6 -0.1801 2.6780 -3.8094 21 1 0.5405 3.4823 -3.8063 22 6 -1.5140 2.9481 -4.0307 23 7 -1.9253 4.1935 -4.1280 24 14 -2.7368 1.5453 -4.1921 25 1 -3.3520 1.2701 -2.8689 26 1 -3.7965 1.9216 -5.1620 27 1 -2.0341 0.3290 -4.6738 28 6 1.4216 1.2530 -2.5592 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.9703 1.4237 -0.0004 33 1 3.1263 -0.6444 1.2951 34 1 1.7517 -1.7715 1.2055 35 1 -0.2199 -1.3889 2.4337 36 1 -1.2201 -0.3924 4.4091 37 1 -0.0821 1.4982 5.5591 38 1 2.0497 2.3368 4.6745 39 1 3.2189 -0.3352 -4.0886 40 1 2.5964 -1.8611 -3.4096 41 1 0.3437 -1.3678 -4.2566 42 1 1.5051 -1.2408 -5.5999 43 1 -0.0537 0.6769 -5.6200 44 1 1.6025 1.2236 -5.2661 45 1 -2.8636 4.3835 -4.2840 46 1 1.0570 1.5940 -1.5902 47 1 2.2182 1.9130 -2.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:59 Heat of formation + Delta-G solvation = -77.890655 kcal Electronic energy + Delta-G solvation = -30837.021288 eV Core-core repulsion = 26792.615872 eV Total energy + Delta-G solvation = -4044.405415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67508 -40.22384 -37.45585 -36.92260 -36.80586 -34.54181 -33.25045 -32.06698 -31.29658 -30.44142 -30.00511 -27.43281 -25.50115 -25.16571 -23.92014 -23.41891 -22.26917 -21.24597 -19.96112 -18.93480 -18.17771 -17.38928 -17.13525 -16.93486 -16.42521 -16.20972 -15.90198 -15.42021 -14.72255 -14.58213 -14.54988 -14.26622 -14.07505 -13.88866 -13.50440 -13.18748 -12.70550 -12.63464 -12.61112 -12.41806 -12.36899 -12.34860 -12.22503 -11.99799 -11.74051 -11.62206 -11.30429 -11.19707 -10.99522 -10.75905 -10.36120 -10.21446 -10.11442 -9.92586 -9.78449 -9.73254 -9.12605 -9.07640 -8.58587 -8.18659 -8.04475 -6.15943 -4.15445 0.71648 1.80189 2.45050 2.62227 3.18764 3.26111 3.30156 3.32082 3.61514 4.07968 4.33559 4.37651 4.46506 4.49128 4.60809 4.73165 4.92526 5.09847 5.12526 5.14296 5.29261 5.39502 5.41697 5.47895 5.61553 5.64356 5.67313 5.84139 5.88710 5.94250 5.96217 6.10409 6.14625 6.16907 6.20476 6.36909 6.38283 6.58080 6.64377 6.73468 6.92996 6.99654 7.18070 7.31481 7.50290 7.60966 7.80370 8.01365 8.26866 8.43235 8.89780 9.46726 10.97121 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.004288 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.085118 B = 6528.607762 C = 7629.284735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 O -0.524 6.524 4 C 0.081 3.919 5 N -0.487 5.487 6 C 0.136 3.864 7 C -0.237 4.237 8 C -0.019 4.019 9 C -0.242 4.242 10 C 0.519 3.481 11 O -0.547 6.547 12 C 0.493 3.507 13 O -0.559 6.559 14 N -0.588 5.588 15 C 0.111 3.889 16 C -0.137 4.137 17 C -0.115 4.115 18 C 0.007 3.993 19 H 0.032 0.968 20 C -0.512 4.512 21 H 0.075 0.925 22 C 0.075 3.925 23 N -0.895 5.895 24 Si 0.870 3.130 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.261 1.261 28 C 0.099 3.901 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.384 0.616 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.264 0.736 46 H 0.115 0.885 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -11.552 13.504 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.066 3.934 3 O -0.331 6.331 4 C -0.042 4.042 5 N -0.197 5.197 6 C 0.009 3.991 7 C -0.261 4.261 8 C -0.041 4.041 9 C -0.264 4.264 10 C 0.321 3.679 11 O -0.429 6.429 12 C 0.278 3.722 13 O -0.440 6.440 14 N -0.319 5.319 15 C -0.011 4.011 16 C -0.175 4.175 17 C -0.154 4.154 18 C -0.013 4.013 19 H 0.050 0.950 20 C -0.550 4.550 21 H 0.093 0.907 22 C -0.127 4.127 23 N -0.532 5.532 24 Si 0.698 3.302 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.186 1.186 28 C -0.022 4.022 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.133 0.867 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.383 -11.591 13.175 17.871 hybrid contribution -0.427 -0.691 -0.301 0.866 sum 2.956 -12.282 12.874 18.037 Atomic orbital electron populations 1.22044 0.90424 1.03019 1.05578 1.21563 0.97122 0.83842 0.90908 1.86677 1.27750 1.22614 1.96066 1.22430 1.01323 0.97871 0.82558 1.45401 1.19485 1.29779 1.25008 1.21988 0.85647 0.97284 0.94219 1.20618 1.03899 1.02297 0.99252 1.21413 0.92891 0.92589 0.97168 1.22126 0.99615 1.05524 0.99142 1.17083 0.85627 0.79831 0.85315 1.90916 1.22896 1.62303 1.66807 1.21014 0.79350 0.86296 0.85517 1.90651 1.46233 1.20715 1.86391 1.48430 1.61056 1.17101 1.05314 1.21697 0.97020 0.97615 0.84793 1.22086 0.97679 0.99785 0.97932 1.21900 1.00496 0.92353 1.00609 1.19473 0.93390 0.97300 0.91140 0.95030 1.20845 0.93844 0.90993 1.49294 0.90677 1.25011 0.98127 0.95139 0.94427 1.69906 1.16071 1.18197 1.49066 0.86962 0.81306 0.83647 0.78326 1.20436 1.21435 1.18551 1.22664 0.97258 0.78579 1.03667 0.90638 0.89074 0.90790 0.76637 0.87455 0.87255 0.82298 0.83867 0.84995 0.83639 0.91701 0.89982 0.92453 0.91927 0.92596 0.92637 0.92593 0.86731 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 7.69 37.16 0.29 -1.81 16 2 C 0.11 1.56 0.73 -91.78 -0.07 1.49 16 3 O -0.52 -8.16 8.82 -44.59 -0.39 -8.56 16 4 C 0.08 0.99 4.17 -4.04 -0.02 0.97 16 5 N -0.49 -5.67 2.26 -119.77 -0.27 -5.94 16 6 C 0.14 1.18 8.04 -16.84 -0.14 1.05 16 7 C -0.24 -1.84 10.01 -39.88 -0.40 -2.24 16 8 C -0.02 -0.16 10.09 -39.51 -0.40 -0.56 16 9 C -0.24 -2.77 9.99 -39.38 -0.39 -3.17 16 10 C 0.52 7.29 7.02 -15.44 -0.11 7.18 16 11 O -0.55 -9.40 15.53 -4.49 -0.07 -9.47 16 12 C 0.49 7.93 6.67 -10.98 -0.07 7.85 16 13 O -0.56 -9.83 15.30 5.56 0.09 -9.74 16 14 N -0.59 -9.90 2.97 -172.50 -0.51 -10.41 16 15 C 0.11 1.74 6.45 -3.48 -0.02 1.72 16 16 C -0.14 -2.21 6.10 -26.38 -0.16 -2.37 16 17 C -0.12 -2.25 4.91 -26.69 -0.13 -2.38 16 18 C 0.01 0.14 1.72 -91.65 -0.16 -0.01 16 19 H 0.03 0.70 5.29 -51.93 -0.27 0.43 16 20 C -0.51 -13.39 8.86 -34.44 -0.31 -13.70 16 21 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 22 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -26.33 13.96 55.43 0.77 -25.55 16 24 Si 0.87 20.44 26.56 -169.99 -4.51 15.93 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.26 -5.83 6.14 56.52 0.35 -5.48 16 28 C 0.10 1.86 4.34 -3.71 -0.02 1.84 16 29 H 0.07 0.97 6.28 -51.93 -0.33 0.65 16 30 H 0.09 1.50 6.00 -51.93 -0.31 1.19 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.38 5.47 8.68 45.56 0.40 5.87 16 33 H 0.11 1.43 7.40 -51.93 -0.38 1.05 16 34 H 0.11 1.16 7.65 -51.93 -0.40 0.76 16 35 H 0.16 0.92 7.94 -52.48 -0.42 0.51 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.27 7.03 -51.93 -0.36 0.90 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.06 1.15 7.16 -51.93 -0.37 0.78 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.12 2.21 3.64 -51.93 -0.19 2.02 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -32.75 364.49 -7.66 -40.42 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.06 Total: 10.00 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.20 Total: -2.17 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.01 Total: -41.90 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.38 Total: -27.77 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.51 Total: 15.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.75 -7.66 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.472 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds