Wall clock time and date at job start Tue Mar 31 2020 18:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47108 * 2 1 4 4 C 1.52996 * 109.47488 * 120.00050 * 2 1 3 5 5 N 1.46500 * 109.47093 * 305.00296 * 4 2 1 6 6 C 1.35759 * 119.63011 * 89.99594 * 5 4 2 7 7 C 1.35349 * 120.70394 * 179.97438 * 6 5 4 8 8 C 1.40193 * 119.94673 * 0.02805 * 7 6 5 9 9 C 1.36394 * 119.26775 * 359.97438 * 8 7 6 10 10 C 1.34662 * 119.61858 * 270.30357 * 5 4 2 11 11 O 1.22059 * 119.99299 * 359.97438 * 10 5 4 12 12 C 1.50701 * 109.46885 * 240.00154 * 2 1 3 13 13 O 1.21276 * 120.00269 * 253.03836 * 12 2 1 14 14 N 1.34777 * 119.99914 * 73.04251 * 12 2 1 15 15 C 1.46930 * 120.62872 * 183.57782 * 14 12 2 16 16 C 1.53630 * 108.53855 * 126.36938 * 15 14 12 17 17 C 1.53039 * 109.24440 * 54.85842 * 16 15 14 18 18 C 1.53035 * 109.53586 * 298.50888 * 17 16 15 19 19 H 1.09003 * 109.50279 * 301.41176 * 18 17 16 20 20 C 1.50702 * 109.49730 * 181.31763 * 18 17 16 21 21 H 1.07997 * 119.99986 * 275.49888 * 20 18 17 22 22 C 1.37879 * 120.00022 * 95.49774 * 20 18 17 23 23 N 1.31511 * 119.99903 * 174.38830 * 22 20 18 24 24 Si 1.86802 * 119.99789 * 354.39384 * 22 20 18 25 25 H 1.48497 * 109.47310 * 93.84827 * 24 22 20 26 26 H 1.48498 * 109.46728 * 213.84447 * 24 22 20 27 27 H 1.48492 * 109.47425 * 333.84561 * 24 22 20 28 28 C 1.46922 * 120.63343 * 3.85900 * 14 12 2 29 29 H 1.09006 * 109.46728 * 300.00109 * 1 2 3 30 30 H 1.08996 * 109.47520 * 59.99560 * 1 2 3 31 31 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 32 32 H 0.96703 * 114.00382 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47517 * 184.99648 * 4 2 1 34 34 H 1.09007 * 109.47000 * 64.99828 * 4 2 1 35 35 H 1.08003 * 119.64687 * 0.02570 * 6 5 4 36 36 H 1.07997 * 120.02067 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.36137 * 180.02562 * 8 7 6 38 38 H 1.08003 * 120.34871 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.58535 * 246.20074 * 15 14 12 40 40 H 1.08998 * 109.58800 * 6.62543 * 15 14 12 41 41 H 1.08997 * 109.63377 * 294.85859 * 16 15 14 42 42 H 1.09007 * 109.45513 * 174.73942 * 16 15 14 43 43 H 1.08991 * 109.45989 * 178.48997 * 17 16 15 44 44 H 1.08998 * 109.46044 * 58.52922 * 17 16 15 45 45 H 0.97000 * 119.99664 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.58470 * 353.37404 * 28 14 12 47 47 H 1.09006 * 109.59220 * 113.65544 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4559 -0.1037 2.4423 6 6 0.2769 -0.5681 2.9296 7 6 -0.2820 -0.0140 4.0307 8 6 0.3577 1.0514 4.6796 9 6 1.5421 1.5166 4.1887 10 6 2.0915 0.9223 3.0397 11 8 3.1483 1.3321 2.5868 12 6 2.0322 -0.7104 -1.2305 13 8 2.5232 -1.8152 -1.1350 14 7 1.9359 -0.1179 -2.4372 15 6 2.3489 -0.8284 -3.6552 16 6 1.1838 -0.7999 -4.6562 17 6 0.7551 0.6505 -4.8899 18 6 0.2722 1.2602 -3.5719 19 1 -0.5595 0.6730 -3.1825 20 6 -0.1801 2.6780 -3.8094 21 1 0.5405 3.4823 -3.8063 22 6 -1.5140 2.9481 -4.0307 23 7 -1.9253 4.1935 -4.1280 24 14 -2.7368 1.5453 -4.1921 25 1 -3.3520 1.2701 -2.8689 26 1 -3.7965 1.9216 -5.1620 27 1 -2.0341 0.3290 -4.6738 28 6 1.4216 1.2530 -2.5592 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.9703 1.4237 -0.0004 33 1 3.1263 -0.6444 1.2951 34 1 1.7517 -1.7715 1.2055 35 1 -0.2199 -1.3889 2.4337 36 1 -1.2201 -0.3924 4.4091 37 1 -0.0821 1.4982 5.5591 38 1 2.0497 2.3368 4.6745 39 1 3.2189 -0.3352 -4.0886 40 1 2.5964 -1.8611 -3.4096 41 1 0.3437 -1.3678 -4.2566 42 1 1.5051 -1.2408 -5.5999 43 1 -0.0537 0.6769 -5.6200 44 1 1.6025 1.2236 -5.2661 45 1 -2.8636 4.3835 -4.2840 46 1 1.0570 1.5940 -1.5902 47 1 2.2182 1.9130 -2.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:58 Heat of formation + Delta-G solvation = -100.239870 kcal Electronic energy + Delta-G solvation = -30837.990422 eV Core-core repulsion = 26792.615872 eV Total energy + Delta-G solvation = -4045.374550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62921 -41.45128 -38.80955 -38.12629 -37.85385 -35.47633 -35.04803 -33.57330 -32.63102 -31.90734 -30.79570 -28.40399 -27.10769 -26.77051 -24.75029 -24.48389 -23.46546 -22.59893 -21.39304 -20.27888 -19.49910 -18.80109 -18.22609 -17.95567 -17.63248 -17.22065 -17.10346 -16.66850 -16.32779 -15.85570 -15.55357 -15.38312 -15.29464 -15.03521 -14.88786 -14.60499 -14.56951 -13.98948 -13.84459 -13.53917 -13.51131 -13.39327 -13.11681 -12.98488 -12.94851 -12.88475 -12.74708 -12.60783 -12.52143 -12.11192 -11.85100 -11.80360 -11.47273 -11.38399 -11.11761 -10.99694 -10.90623 -10.68133 -10.29950 -9.61590 -8.88931 -8.27349 -6.30672 -0.03345 1.01112 1.31970 1.34225 1.37631 1.48089 1.53383 2.04092 2.35590 2.73899 2.98378 3.07886 3.25820 3.47366 3.53362 3.82863 3.92606 4.06667 4.08125 4.14394 4.23937 4.27086 4.34906 4.42165 4.48202 4.53021 4.56272 4.57285 4.61356 4.73268 4.77480 4.95322 5.02646 5.03147 5.10492 5.12592 5.21551 5.23750 5.44585 5.45802 5.53405 5.62233 5.70152 5.75330 6.14630 6.28151 6.31594 6.44830 6.76209 6.97159 7.07912 7.34740 8.89613 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.004288 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.085118 B = 6528.607762 C = 7629.284735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.112 3.888 3 O -0.540 6.540 4 C 0.089 3.911 5 N -0.486 5.486 6 C 0.124 3.876 7 C -0.229 4.229 8 C 0.002 3.998 9 C -0.281 4.281 10 C 0.501 3.499 11 O -0.600 6.600 12 C 0.496 3.504 13 O -0.569 6.569 14 N -0.592 5.592 15 C 0.109 3.891 16 C -0.126 4.126 17 C -0.114 4.114 18 C 0.008 3.992 19 H 0.031 0.969 20 C -0.510 4.510 21 H 0.032 0.968 22 C 0.017 3.983 23 N -0.948 5.948 24 Si 0.933 3.067 25 H -0.267 1.267 26 H -0.291 1.291 27 H -0.240 1.240 28 C 0.116 3.884 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.386 0.614 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.195 0.805 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.265 0.735 46 H 0.110 0.890 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -15.066 14.637 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.068 3.932 3 O -0.347 6.347 4 C -0.034 4.034 5 N -0.195 5.195 6 C -0.002 4.002 7 C -0.251 4.251 8 C -0.019 4.019 9 C -0.303 4.303 10 C 0.305 3.695 11 O -0.487 6.487 12 C 0.283 3.717 13 O -0.450 6.450 14 N -0.322 5.322 15 C -0.013 4.013 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.012 4.012 19 H 0.050 0.950 20 C -0.549 4.549 21 H 0.050 0.950 22 C -0.180 4.180 23 N -0.588 5.588 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.163 1.163 28 C -0.006 4.006 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.236 0.764 33 H 0.108 0.892 34 H 0.151 0.849 35 H 0.212 0.788 36 H 0.199 0.801 37 H 0.183 0.817 38 H 0.159 0.841 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.127 0.873 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.688 -15.151 14.327 20.921 hybrid contribution 0.107 0.435 -0.590 0.741 sum 1.795 -14.717 13.736 20.211 Atomic orbital electron populations 1.22064 0.89690 1.04618 1.04410 1.21653 0.97554 0.83122 0.90911 1.86654 1.28038 1.23961 1.96080 1.22302 1.00439 0.98629 0.81986 1.45354 1.20343 1.29232 1.24541 1.22713 0.84509 0.98154 0.94818 1.21159 1.04672 1.01076 0.98235 1.21856 0.91118 0.91688 0.97271 1.22135 1.01625 1.06940 0.99605 1.17543 0.85478 0.80381 0.86075 1.90871 1.25144 1.64240 1.68433 1.21294 0.78711 0.86075 0.85669 1.90644 1.46594 1.21193 1.86537 1.48373 1.61269 1.16257 1.06311 1.21823 0.97218 0.98065 0.84208 1.21996 0.97782 0.97033 0.99582 1.21770 1.00024 0.94792 0.98661 1.19407 0.94331 0.94344 0.93103 0.95033 1.21093 0.93128 0.92529 1.48106 0.94962 1.25855 1.00283 0.97569 0.94331 1.70065 1.16561 1.20753 1.51398 0.85942 0.78648 0.80986 0.78681 1.19249 1.21771 1.16267 1.22233 0.96012 0.79790 1.02538 0.89936 0.92028 0.87764 0.76435 0.89213 0.84933 0.78792 0.80087 0.81731 0.84064 0.90694 0.89037 0.92530 0.88914 0.93729 0.92929 0.92638 0.87270 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 7.69 71.98 0.55 -3.23 16 2 C 0.11 3.05 0.73 -11.54 -0.01 3.04 16 3 O -0.54 -17.29 8.82 -140.04 -1.24 -18.52 16 4 C 0.09 2.07 4.17 86.38 0.36 2.43 16 5 N -0.49 -10.64 2.26 -650.97 -1.47 -12.11 16 6 C 0.12 1.71 8.04 83.42 0.67 2.38 16 7 C -0.23 -2.56 10.01 22.08 0.22 -2.34 16 8 C 0.00 0.03 10.09 22.31 0.23 0.26 16 9 C -0.28 -6.39 9.99 22.40 0.22 -6.16 16 10 C 0.50 14.28 7.02 84.82 0.60 14.88 16 11 O -0.60 -21.90 15.53 3.44 0.05 -21.84 16 12 C 0.50 15.19 6.67 87.66 0.58 15.78 16 13 O -0.57 -18.68 15.30 -3.02 -0.05 -18.73 16 14 N -0.59 -19.13 2.97 -818.04 -2.43 -21.55 16 15 C 0.11 3.14 6.45 86.51 0.56 3.70 16 16 C -0.13 -3.70 6.10 30.82 0.19 -3.51 16 17 C -0.11 -4.30 4.91 30.62 0.15 -4.15 16 18 C 0.01 0.33 1.72 -11.46 -0.02 0.31 16 19 H 0.03 1.35 5.29 -2.39 -0.01 1.34 16 20 C -0.51 -27.56 8.86 25.60 0.23 -27.33 16 21 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 22 C 0.02 0.95 5.47 84.66 0.46 1.41 16 23 N -0.95 -57.71 13.96 21.45 0.30 -57.41 16 24 Si 0.93 41.91 26.56 68.60 1.82 43.73 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.24 -9.81 6.14 99.48 0.61 -9.20 16 28 C 0.12 4.39 4.34 86.36 0.38 4.76 16 29 H 0.08 1.94 6.28 -2.38 -0.01 1.92 16 30 H 0.06 1.95 6.00 -2.39 -0.01 1.93 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.39 11.71 8.68 -74.06 -0.64 11.07 16 33 H 0.09 2.42 7.40 -2.39 -0.02 2.41 16 34 H 0.13 2.41 7.65 -2.38 -0.02 2.39 16 35 H 0.20 1.22 7.94 -2.91 -0.02 1.20 16 36 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.09 2.54 7.03 -2.39 -0.02 2.52 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.04 1.76 7.16 -2.39 -0.02 1.75 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.11 4.30 3.64 -2.39 -0.01 4.29 16 47 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -75.38 364.49 2.62 -72.76 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.26 Total: 31.47 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.37 Total: 2.21 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -3.60 Total: -91.07 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -1.23 Total: -59.09 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.82 Total: 43.73 kcal Total: -75.38 2.62 -72.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.482 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds