Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.53001 * 109.47221 * 119.99844 * 2 1 3 5 5 N 1.46500 * 109.47183 * 305.00094 * 4 2 1 6 6 C 1.35764 * 119.62455 * 89.99927 * 5 4 2 7 7 C 1.35343 * 120.70285 * 179.97438 * 6 5 4 8 8 C 1.40204 * 119.94795 * 0.02634 * 7 6 5 9 9 C 1.36393 * 119.26205 * 359.97438 * 8 7 6 10 10 C 1.34658 * 119.62351 * 269.72581 * 5 4 2 11 11 O 1.22064 * 119.98492 * 359.97438 * 10 5 4 12 12 C 1.50706 * 109.47320 * 239.99822 * 2 1 3 13 13 O 1.21276 * 119.99962 * 258.90067 * 12 2 1 14 14 N 1.34775 * 119.99747 * 78.89563 * 12 2 1 15 15 C 1.46924 * 120.63345 * 354.30724 * 14 12 2 16 16 C 1.53194 * 108.78172 * 233.60904 * 15 14 12 17 17 C 1.53043 * 109.30910 * 305.36518 * 16 15 14 18 18 C 1.53043 * 109.53793 * 61.36057 * 17 16 15 19 19 H 1.09001 * 109.49812 * 58.61675 * 18 17 16 20 20 C 1.50696 * 109.49758 * 178.68304 * 18 17 16 21 21 H 1.07996 * 120.00170 * 119.99925 * 20 18 17 22 22 C 1.37876 * 119.99949 * 299.72506 * 20 18 17 23 23 N 1.31518 * 119.99984 * 0.27380 * 22 20 18 24 24 Si 1.86803 * 120.00267 * 180.27461 * 22 20 18 25 25 H 1.48500 * 109.46791 * 90.00082 * 24 22 20 26 26 H 1.48501 * 109.47459 * 209.99921 * 24 22 20 27 27 H 1.48498 * 109.46738 * 330.00226 * 24 22 20 28 28 C 1.46931 * 120.63006 * 174.30883 * 14 12 2 29 29 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47088 * 299.99861 * 1 2 3 31 31 H 1.09000 * 109.46943 * 60.00329 * 1 2 3 32 32 H 0.96704 * 113.99616 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46944 * 65.00335 * 4 2 1 34 34 H 1.08998 * 109.47403 * 184.99769 * 4 2 1 35 35 H 1.08006 * 119.64703 * 359.97438 * 6 5 4 36 36 H 1.07993 * 120.02901 * 179.97438 * 7 6 5 37 37 H 1.07993 * 120.36693 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.34591 * 180.02562 * 9 8 7 39 39 H 1.09006 * 109.58826 * 113.82094 * 15 14 12 40 40 H 1.09005 * 109.70387 * 353.47113 * 15 14 12 41 41 H 1.08995 * 109.50003 * 185.41539 * 16 15 14 42 42 H 1.09004 * 109.51908 * 65.32711 * 16 15 14 43 43 H 1.08999 * 109.45712 * 301.34155 * 17 16 15 44 44 H 1.08998 * 109.45904 * 181.38178 * 17 16 15 45 45 H 0.97006 * 119.99651 * 179.97438 * 23 22 20 46 46 H 1.08994 * 109.58259 * 6.60344 * 28 14 12 47 47 H 1.09003 * 109.58079 * 246.17631 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4559 -0.1036 2.4424 6 6 0.2768 -0.5681 2.9296 7 6 -0.2821 -0.0141 4.0307 8 6 0.3576 1.0514 4.6797 9 6 1.5420 1.5166 4.1887 10 6 2.0972 0.9146 3.0466 11 8 3.1593 1.3175 2.5998 12 6 2.0324 -0.7105 -1.2305 13 8 2.4252 -1.8552 -1.1518 14 7 2.0451 -0.0737 -2.4182 15 6 1.4587 1.2664 -2.5555 16 6 0.4438 1.2456 -3.7028 17 6 1.1240 0.7243 -4.9708 18 6 1.6174 -0.7053 -4.7361 19 1 0.7746 -1.3412 -4.4650 20 6 2.2582 -1.2293 -5.9953 21 1 3.2939 -1.5354 -5.9872 22 6 1.5208 -1.3233 -7.1565 23 7 0.2596 -0.9505 -7.1665 24 14 2.3130 -1.9800 -8.7156 25 1 2.1361 -3.4532 -8.7779 26 1 1.6705 -1.3539 -9.8990 27 1 3.7620 -1.6553 -8.7091 28 6 2.6455 -0.7065 -3.6005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9703 1.4236 -0.0004 33 1 1.7517 -1.7715 1.2056 34 1 3.1263 -0.6444 1.2952 35 1 -0.2203 -1.3884 2.4332 36 1 -1.2206 -0.3918 4.4086 37 1 -0.0826 1.4988 5.5585 38 1 2.0500 2.3363 4.6750 39 1 2.2450 1.9885 -2.7763 40 1 0.9569 1.5447 -1.6287 41 1 0.0721 2.2551 -3.8782 42 1 -0.3882 0.5918 -3.4412 43 1 1.9707 1.3646 -5.2181 44 1 0.4106 0.7315 -5.7948 45 1 -0.2591 -1.0163 -7.9836 46 1 2.9263 -1.7325 -3.3628 47 1 3.5285 -0.1454 -3.9065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = -79.618941 kcal Electronic energy + Delta-G solvation = -30270.845970 eV Core-core repulsion = 26226.365610 eV Total energy + Delta-G solvation = -4044.480359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76133 -40.15485 -37.38158 -37.01361 -36.70978 -34.65221 -33.42128 -31.53395 -31.34466 -30.16509 -30.04915 -27.56271 -25.39758 -25.03974 -24.01068 -23.35320 -21.96822 -21.65572 -19.96067 -18.89822 -18.04845 -17.48811 -17.11374 -16.70553 -16.45148 -16.26602 -15.56482 -15.36437 -14.87131 -14.67103 -14.61765 -14.34918 -13.96454 -13.67187 -13.49635 -12.88784 -12.82534 -12.69238 -12.67090 -12.47751 -12.33780 -12.21954 -12.10568 -11.93444 -11.83467 -11.71657 -11.17312 -11.00352 -10.78865 -10.72492 -10.28336 -10.25121 -10.04589 -9.93112 -9.82570 -9.50753 -9.16121 -8.81943 -8.42224 -8.15582 -7.97037 -6.05144 -4.12490 0.60540 1.68652 2.36240 2.73303 3.27693 3.30426 3.34604 3.38566 3.54266 3.95820 4.29911 4.37229 4.39645 4.41363 4.59369 4.62458 4.81595 4.98995 5.04717 5.22272 5.24594 5.38606 5.45222 5.47551 5.58412 5.70156 5.73559 5.83154 5.86192 5.93294 6.03172 6.16220 6.27507 6.31398 6.36026 6.47032 6.61141 6.77634 6.89054 6.89586 7.12932 7.28072 7.39284 7.65680 7.84675 7.90487 7.93044 8.04054 8.31041 8.44137 8.90900 9.52604 11.00253 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029012 B = 0.002715 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.879421 B =10309.116158 C =10383.818717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.109 3.891 3 O -0.535 6.535 4 C 0.079 3.921 5 N -0.486 5.486 6 C 0.137 3.863 7 C -0.239 4.239 8 C -0.019 4.019 9 C -0.244 4.244 10 C 0.518 3.482 11 O -0.548 6.548 12 C 0.488 3.512 13 O -0.549 6.549 14 N -0.584 5.584 15 C 0.100 3.900 16 C -0.137 4.137 17 C -0.113 4.113 18 C 0.042 3.958 19 H 0.029 0.971 20 C -0.515 4.515 21 H 0.057 0.943 22 C 0.064 3.936 23 N -0.889 5.889 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.113 3.887 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.386 0.614 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.095 0.905 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 4.197 21.711 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.064 3.936 3 O -0.342 6.342 4 C -0.044 4.044 5 N -0.196 5.196 6 C 0.010 3.990 7 C -0.262 4.262 8 C -0.040 4.040 9 C -0.266 4.266 10 C 0.320 3.680 11 O -0.430 6.430 12 C 0.273 3.727 13 O -0.428 6.428 14 N -0.315 5.315 15 C -0.023 4.023 16 C -0.175 4.175 17 C -0.151 4.151 18 C 0.023 3.977 19 H 0.047 0.953 20 C -0.554 4.554 21 H 0.075 0.925 22 C -0.138 4.138 23 N -0.527 5.527 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.008 4.008 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.236 0.764 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.727 4.007 21.276 21.968 hybrid contribution 0.766 -0.425 -0.966 1.304 sum -2.961 3.582 20.309 20.834 Atomic orbital electron populations 1.21994 0.90614 1.03448 1.04455 1.21602 0.96925 0.83575 0.91524 1.86555 1.28045 1.23238 1.96369 1.22462 1.01425 0.98168 0.82335 1.45423 1.19276 1.30031 1.24852 1.22028 0.85645 0.97114 0.94243 1.20625 1.04012 1.02351 0.99237 1.21418 0.92963 0.92607 0.97043 1.22120 0.99509 1.05549 0.99404 1.17092 0.85665 0.79947 0.85263 1.90925 1.22531 1.62617 1.66919 1.20885 0.79675 0.86921 0.85222 1.90687 1.49078 1.17319 1.85763 1.48284 1.56063 1.18145 1.08993 1.22123 0.96850 0.82778 1.00527 1.22041 0.97957 1.00359 0.97136 1.21636 1.00045 0.97274 0.96131 1.18947 0.93670 0.93574 0.91490 0.95327 1.21069 0.97517 1.42593 0.94174 0.92502 1.24936 0.94806 0.95181 0.98872 1.69876 1.07439 1.47553 1.27859 0.86575 0.79525 0.79097 0.82707 1.20661 1.21220 1.19875 1.22085 0.96887 0.97661 0.84124 0.90307 0.90867 0.89970 0.76386 0.86927 0.87411 0.82178 0.83840 0.85013 0.83689 0.92119 0.88327 0.92459 0.92633 0.94591 0.88696 0.92960 0.90316 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.69 37.16 0.29 -1.34 16 2 C 0.11 1.39 0.73 -91.77 -0.07 1.32 16 3 O -0.53 -6.99 8.96 -43.08 -0.39 -7.38 16 4 C 0.08 0.91 4.24 -4.04 -0.02 0.89 16 5 N -0.49 -5.03 2.26 -119.77 -0.27 -5.30 16 6 C 0.14 1.00 8.04 -16.84 -0.14 0.87 16 7 C -0.24 -1.48 10.01 -39.88 -0.40 -1.88 16 8 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 9 C -0.24 -2.41 9.99 -39.38 -0.39 -2.80 16 10 C 0.52 6.52 7.03 -15.45 -0.11 6.41 16 11 O -0.55 -8.70 15.60 -2.98 -0.05 -8.75 16 12 C 0.49 8.19 6.62 -10.98 -0.07 8.12 16 13 O -0.55 -10.78 15.33 5.56 0.09 -10.70 16 14 N -0.58 -10.47 2.97 -172.76 -0.51 -10.98 16 15 C 0.10 1.59 5.08 -3.71 -0.02 1.57 16 16 C -0.14 -2.45 6.08 -26.61 -0.16 -2.61 16 17 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 18 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 19 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.51 -13.82 8.56 -34.44 -0.29 -14.12 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 23 N -0.89 -24.74 11.32 55.43 0.63 -24.12 16 24 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.11 2.40 5.66 -3.71 -0.02 2.38 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.71 6.28 -51.93 -0.33 0.39 16 31 H 0.08 1.00 6.33 -51.93 -0.33 0.67 16 32 H 0.39 4.85 8.72 45.56 0.40 5.25 16 33 H 0.11 1.18 7.59 -51.93 -0.39 0.79 16 34 H 0.11 1.40 7.38 -51.93 -0.38 1.02 16 35 H 0.16 0.74 7.94 -52.48 -0.42 0.33 16 36 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.41 3.65 -51.93 -0.19 1.22 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 1.78 7.00 -51.93 -0.36 1.42 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -32.33 367.82 -8.31 -40.64 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.09 Total: 7.00 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.24 Total: -1.93 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.16 Total: -40.40 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.35 Total: -26.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.33 -8.31 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.981 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds