Wall clock time and date at job start Tue Mar 31 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.53001 * 109.47221 * 119.99844 * 2 1 3 5 5 N 1.46500 * 109.47183 * 305.00094 * 4 2 1 6 6 C 1.35764 * 119.62455 * 89.99927 * 5 4 2 7 7 C 1.35343 * 120.70285 * 179.97438 * 6 5 4 8 8 C 1.40204 * 119.94795 * 0.02634 * 7 6 5 9 9 C 1.36393 * 119.26205 * 359.97438 * 8 7 6 10 10 C 1.34658 * 119.62351 * 269.72581 * 5 4 2 11 11 O 1.22064 * 119.98492 * 359.97438 * 10 5 4 12 12 C 1.50706 * 109.47320 * 239.99822 * 2 1 3 13 13 O 1.21276 * 119.99962 * 258.90067 * 12 2 1 14 14 N 1.34775 * 119.99747 * 78.89563 * 12 2 1 15 15 C 1.46924 * 120.63345 * 354.30724 * 14 12 2 16 16 C 1.53194 * 108.78172 * 233.60904 * 15 14 12 17 17 C 1.53043 * 109.30910 * 305.36518 * 16 15 14 18 18 C 1.53043 * 109.53793 * 61.36057 * 17 16 15 19 19 H 1.09001 * 109.49812 * 58.61675 * 18 17 16 20 20 C 1.50696 * 109.49758 * 178.68304 * 18 17 16 21 21 H 1.07996 * 120.00170 * 119.99925 * 20 18 17 22 22 C 1.37876 * 119.99949 * 299.72506 * 20 18 17 23 23 N 1.31518 * 119.99984 * 0.27380 * 22 20 18 24 24 Si 1.86803 * 120.00267 * 180.27461 * 22 20 18 25 25 H 1.48500 * 109.46791 * 90.00082 * 24 22 20 26 26 H 1.48501 * 109.47459 * 209.99921 * 24 22 20 27 27 H 1.48498 * 109.46738 * 330.00226 * 24 22 20 28 28 C 1.46931 * 120.63006 * 174.30883 * 14 12 2 29 29 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47088 * 299.99861 * 1 2 3 31 31 H 1.09000 * 109.46943 * 60.00329 * 1 2 3 32 32 H 0.96704 * 113.99616 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46944 * 65.00335 * 4 2 1 34 34 H 1.08998 * 109.47403 * 184.99769 * 4 2 1 35 35 H 1.08006 * 119.64703 * 359.97438 * 6 5 4 36 36 H 1.07993 * 120.02901 * 179.97438 * 7 6 5 37 37 H 1.07993 * 120.36693 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.34591 * 180.02562 * 9 8 7 39 39 H 1.09006 * 109.58826 * 113.82094 * 15 14 12 40 40 H 1.09005 * 109.70387 * 353.47113 * 15 14 12 41 41 H 1.08995 * 109.50003 * 185.41539 * 16 15 14 42 42 H 1.09004 * 109.51908 * 65.32711 * 16 15 14 43 43 H 1.08999 * 109.45712 * 301.34155 * 17 16 15 44 44 H 1.08998 * 109.45904 * 181.38178 * 17 16 15 45 45 H 0.97006 * 119.99651 * 179.97438 * 23 22 20 46 46 H 1.08994 * 109.58259 * 6.60344 * 28 14 12 47 47 H 1.09003 * 109.58079 * 246.17631 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4559 -0.1036 2.4424 6 6 0.2768 -0.5681 2.9296 7 6 -0.2821 -0.0141 4.0307 8 6 0.3576 1.0514 4.6797 9 6 1.5420 1.5166 4.1887 10 6 2.0972 0.9146 3.0466 11 8 3.1593 1.3175 2.5998 12 6 2.0324 -0.7105 -1.2305 13 8 2.4252 -1.8552 -1.1518 14 7 2.0451 -0.0737 -2.4182 15 6 1.4587 1.2664 -2.5555 16 6 0.4438 1.2456 -3.7028 17 6 1.1240 0.7243 -4.9708 18 6 1.6174 -0.7053 -4.7361 19 1 0.7746 -1.3412 -4.4650 20 6 2.2582 -1.2293 -5.9953 21 1 3.2939 -1.5354 -5.9872 22 6 1.5208 -1.3233 -7.1565 23 7 0.2596 -0.9505 -7.1665 24 14 2.3130 -1.9800 -8.7156 25 1 2.1361 -3.4532 -8.7779 26 1 1.6705 -1.3539 -9.8990 27 1 3.7620 -1.6553 -8.7091 28 6 2.6455 -0.7065 -3.6005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9703 1.4236 -0.0004 33 1 1.7517 -1.7715 1.2056 34 1 3.1263 -0.6444 1.2952 35 1 -0.2203 -1.3884 2.4332 36 1 -1.2206 -0.3918 4.4086 37 1 -0.0826 1.4988 5.5585 38 1 2.0500 2.3363 4.6750 39 1 2.2450 1.9885 -2.7763 40 1 0.9569 1.5447 -1.6287 41 1 0.0721 2.2551 -3.8782 42 1 -0.3882 0.5918 -3.4412 43 1 1.9707 1.3646 -5.2181 44 1 0.4106 0.7315 -5.7948 45 1 -0.2591 -1.0163 -7.9836 46 1 2.9263 -1.7325 -3.3628 47 1 3.5285 -0.1454 -3.9065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:01 Heat of formation + Delta-G solvation = -100.849796 kcal Electronic energy + Delta-G solvation = -30271.766609 eV Core-core repulsion = 26226.365610 eV Total energy + Delta-G solvation = -4045.400998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61760 -41.41310 -38.76621 -38.07429 -37.84276 -35.57592 -35.13875 -33.06367 -32.57848 -31.74288 -30.78449 -28.43151 -27.17252 -26.62491 -24.70508 -24.34809 -23.42774 -22.92584 -21.40626 -20.24079 -19.30529 -18.42305 -18.21318 -17.90911 -17.70616 -17.10632 -17.01126 -16.66831 -16.46990 -15.85786 -15.43522 -15.32154 -15.19285 -14.98718 -14.96236 -14.56233 -14.44562 -13.81525 -13.72843 -13.54840 -13.44128 -13.34342 -13.11343 -12.99036 -12.91658 -12.84920 -12.62288 -12.59569 -12.58432 -12.11192 -11.89987 -11.77356 -11.56128 -11.26974 -11.09976 -10.90088 -10.85360 -10.49693 -10.32333 -9.55834 -8.88167 -8.12292 -6.27442 -0.01927 1.02156 1.37445 1.39753 1.40843 1.50061 1.52830 2.06038 2.41999 2.75174 2.95932 3.14300 3.24698 3.47777 3.52797 3.84387 3.93553 4.11629 4.16499 4.24571 4.27790 4.32739 4.43913 4.47439 4.52989 4.56147 4.59121 4.60423 4.66745 4.81106 4.85250 4.96676 5.00491 5.11453 5.13128 5.25708 5.26986 5.42386 5.46377 5.51714 5.59412 5.71356 5.90494 6.09728 6.16165 6.28166 6.32223 6.49422 6.81269 7.01702 7.09134 7.40700 8.91306 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029012 B = 0.002715 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.879421 B =10309.116158 C =10383.818717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.122 3.878 3 O -0.536 6.536 4 C 0.086 3.914 5 N -0.484 5.484 6 C 0.122 3.878 7 C -0.225 4.225 8 C 0.004 3.996 9 C -0.278 4.278 10 C 0.501 3.499 11 O -0.601 6.601 12 C 0.486 3.514 13 O -0.580 6.580 14 N -0.590 5.590 15 C 0.107 3.893 16 C -0.128 4.128 17 C -0.106 4.106 18 C 0.045 3.955 19 H -0.010 1.010 20 C -0.539 4.539 21 H 0.052 0.948 22 C 0.018 3.982 23 N -0.912 5.912 24 Si 0.954 3.046 25 H -0.278 1.278 26 H -0.280 1.280 27 H -0.269 1.269 28 C 0.126 3.874 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.388 0.612 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.191 0.809 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.262 0.738 46 H 0.058 0.942 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 4.610 23.680 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.077 3.923 3 O -0.343 6.343 4 C -0.037 4.037 5 N -0.193 5.193 6 C -0.003 4.003 7 C -0.248 4.248 8 C -0.018 4.018 9 C -0.300 4.300 10 C 0.306 3.694 11 O -0.488 6.488 12 C 0.273 3.727 13 O -0.461 6.461 14 N -0.320 5.320 15 C -0.014 4.014 16 C -0.166 4.166 17 C -0.144 4.144 18 C 0.026 3.974 19 H 0.008 0.992 20 C -0.577 4.577 21 H 0.070 0.930 22 C -0.182 4.182 23 N -0.551 5.551 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.206 1.206 27 H -0.193 1.193 28 C 0.004 3.996 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.238 0.762 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.208 0.792 36 H 0.199 0.801 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.585 4.423 23.280 24.346 hybrid contribution 1.244 -0.617 -1.502 2.045 sum -4.341 3.805 21.778 22.530 Atomic orbital electron populations 1.22045 0.88662 1.04640 1.04934 1.21530 0.98063 0.83035 0.89694 1.86529 1.28336 1.23284 1.96169 1.22263 1.00386 0.98601 0.82491 1.45330 1.20158 1.29603 1.24178 1.22682 0.84575 0.98037 0.95049 1.21150 1.04675 1.01007 0.97931 1.21857 0.91189 0.91619 0.97122 1.22122 1.01375 1.06824 0.99643 1.17572 0.85454 0.80375 0.86024 1.90884 1.24761 1.64557 1.68556 1.21686 0.78565 0.86611 0.85881 1.90665 1.50184 1.18962 1.86312 1.48301 1.56361 1.18862 1.08495 1.22211 0.96653 0.81794 1.00754 1.21949 0.97821 1.01389 0.95468 1.21436 0.99376 0.96137 0.97455 1.18832 0.92905 0.93968 0.91736 0.99165 1.21429 0.97556 1.43080 0.95635 0.93003 1.25675 0.95328 0.95404 1.01749 1.70005 1.08437 1.48097 1.28564 0.85617 0.78839 0.78402 0.79164 1.20415 1.20574 1.19334 1.21643 0.96241 0.97034 0.84698 0.88855 0.88935 0.90826 0.76183 0.85760 0.89550 0.79223 0.80116 0.81621 0.83903 0.91142 0.85938 0.89762 0.93314 0.94782 0.91834 0.92897 0.92356 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.69 71.98 0.55 -2.28 16 2 C 0.12 2.98 0.73 -11.54 -0.01 2.97 16 3 O -0.54 -13.50 8.96 -141.48 -1.27 -14.76 16 4 C 0.09 1.92 4.24 86.38 0.37 2.29 16 5 N -0.48 -9.22 2.26 -650.98 -1.47 -10.69 16 6 C 0.12 1.34 8.04 83.42 0.67 2.01 16 7 C -0.23 -1.71 10.01 22.08 0.22 -1.49 16 8 C 0.00 0.04 10.10 22.32 0.23 0.26 16 9 C -0.28 -5.12 9.99 22.40 0.22 -4.90 16 10 C 0.50 12.41 7.03 84.82 0.60 13.01 16 11 O -0.60 -19.81 15.60 1.98 0.03 -19.78 16 12 C 0.49 16.28 6.62 87.66 0.58 16.86 16 13 O -0.58 -23.17 15.33 -3.02 -0.05 -23.21 16 14 N -0.59 -21.19 2.97 -818.89 -2.43 -23.63 16 15 C 0.11 3.28 5.08 86.36 0.44 3.72 16 16 C -0.13 -4.48 6.08 30.67 0.19 -4.29 16 17 C -0.11 -4.81 4.96 30.62 0.15 -4.66 16 18 C 0.04 2.25 2.25 -11.46 -0.03 2.22 16 19 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 20 C -0.54 -29.80 8.56 25.60 0.22 -29.58 16 21 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 22 C 0.02 0.98 5.31 84.65 0.45 1.43 16 23 N -0.91 -51.94 11.32 21.45 0.24 -51.70 16 24 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 C 0.13 5.52 5.66 86.36 0.49 6.01 16 29 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.09 1.47 6.28 -2.39 -0.02 1.45 16 31 H 0.07 1.59 6.33 -2.39 -0.02 1.58 16 32 H 0.39 9.78 8.72 -74.05 -0.65 9.13 16 33 H 0.12 2.46 7.59 -2.39 -0.02 2.44 16 34 H 0.09 2.33 7.38 -2.39 -0.02 2.31 16 35 H 0.19 0.88 7.94 -2.91 -0.02 0.86 16 36 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.12 3.23 3.65 -2.38 -0.01 3.22 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 3.30 6.05 -2.39 -0.01 3.29 16 45 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 46 H 0.06 2.76 7.00 -2.39 -0.02 2.74 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -74.54 367.82 2.77 -71.77 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.35 Total: 22.82 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.34 Total: 3.57 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -3.66 Total: -86.02 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -1.28 Total: -57.76 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.54 2.77 -71.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.081 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds