Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47286 * 2 1 4 4 H 1.09006 * 109.47181 * 55.00178 * 3 2 1 5 5 N 1.46498 * 109.47329 * 294.99930 * 3 2 1 6 6 C 1.34779 * 119.99663 * 85.00279 * 5 3 2 7 7 C 1.50702 * 119.99654 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00183 * 359.97438 * 6 5 3 9 9 C 1.50706 * 109.47269 * 175.00012 * 3 2 1 10 10 O 1.21286 * 120.00189 * 120.00087 * 9 3 2 11 11 N 1.34773 * 119.99707 * 300.00349 * 9 3 2 12 12 C 1.39921 * 119.99939 * 185.26895 * 11 9 3 13 13 C 1.38933 * 120.04319 * 213.34575 * 12 11 9 14 14 C 1.38114 * 120.04190 * 179.97438 * 13 12 11 15 15 C 1.38216 * 120.12381 * 359.67942 * 14 13 12 16 16 C 1.38762 * 120.08215 * 0.59428 * 15 14 13 17 17 O 1.35905 * 120.01878 * 179.70358 * 16 15 14 18 18 C 1.42893 * 117.00029 * 359.72620 * 17 16 15 19 19 C 1.53000 * 109.47333 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47294 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00551 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00222 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47076 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47447 * 119.99676 * 24 22 20 27 27 H 1.48502 * 109.47542 * 240.00196 * 24 22 20 28 28 C 1.38620 * 119.96122 * 359.42805 * 16 15 14 29 29 H 1.09005 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47638 * 299.99977 * 1 2 3 31 31 H 1.09006 * 109.47152 * 60.00018 * 1 2 3 32 32 H 1.09003 * 109.46961 * 239.99954 * 2 1 3 33 33 H 1.08999 * 109.46710 * 120.00483 * 2 1 3 34 34 H 0.96996 * 120.00418 * 265.00044 * 5 3 2 35 35 H 1.08993 * 109.47372 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.47017 * 119.99748 * 7 6 5 37 37 H 1.08999 * 109.47204 * 239.99424 * 7 6 5 38 38 H 0.97006 * 120.00285 * 5.26661 * 11 9 3 39 39 H 1.08001 * 119.97956 * 359.97261 * 13 12 11 40 40 H 1.07999 * 119.93926 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.96043 * 180.32142 * 15 14 13 42 42 H 1.09009 * 109.47436 * 300.00048 * 18 17 16 43 43 H 1.08998 * 109.47501 * 60.00531 * 18 17 16 44 44 H 1.09000 * 109.46753 * 300.00290 * 19 18 17 45 45 H 1.09007 * 109.47212 * 59.99762 * 19 18 17 46 46 H 0.97003 * 119.99845 * 179.97438 * 23 22 20 47 47 H 1.07998 * 120.06626 * 180.29384 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6644 -1.3668 7 6 0.0363 3.3377 -2.6547 8 8 -0.3395 2.6320 -0.4343 9 6 3.5419 1.4442 0.1238 10 8 4.2217 1.9435 -0.7478 11 7 4.1297 0.8910 1.2031 12 6 5.5151 0.9893 1.3726 13 6 6.2164 -0.0437 1.9820 14 6 7.5840 0.0532 2.1488 15 6 8.2593 1.1743 1.7045 16 6 7.5633 2.2116 1.1003 17 8 8.2278 3.3160 0.6694 18 6 9.6414 3.3444 0.8760 19 6 10.2104 4.6558 0.3307 20 6 11.7011 4.6860 0.5492 21 1 12.1936 3.8533 1.0294 22 6 12.4365 5.7767 0.1360 23 7 11.8368 6.7909 -0.4483 24 14 14.2844 5.8139 0.4062 25 1 14.7115 4.5612 1.0797 26 1 14.9740 5.9320 -0.9037 27 1 14.6369 6.9781 1.2580 28 6 6.1906 2.1182 0.9315 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.2719 2.1231 -1.9977 35 1 0.8550 3.2664 -3.3708 36 1 -0.8474 2.8471 -3.0627 37 1 -0.1870 4.3871 -2.4622 38 1 3.5923 0.4246 1.8624 39 1 5.6918 -0.9231 2.3254 40 1 8.1274 -0.7507 2.6231 41 1 9.3295 1.2450 1.8317 42 1 9.8543 3.2721 1.9427 43 1 10.1016 2.5043 0.3560 44 1 9.9975 4.7285 -0.7358 45 1 9.7502 5.4958 0.8511 46 1 12.3541 7.5584 -0.7387 47 1 5.6478 2.9225 0.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601004581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = -95.328841 kcal Electronic energy + Delta-G solvation = -27841.648737 eV Core-core repulsion = 23796.487145 eV Total energy + Delta-G solvation = -4045.161592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19906 -40.03439 -39.19814 -37.30866 -35.76041 -34.81733 -33.36731 -32.96247 -30.91864 -30.19324 -29.76791 -29.13787 -27.19847 -25.05119 -23.36511 -22.47020 -22.17986 -21.19913 -20.75681 -20.22970 -18.68919 -17.89884 -17.12185 -16.47676 -16.40562 -16.11791 -15.93759 -15.57101 -15.38671 -15.26666 -14.94452 -14.57875 -14.41388 -14.27637 -13.82906 -13.50308 -13.15458 -12.97896 -12.88377 -12.76978 -12.53604 -12.34073 -12.31397 -11.96353 -11.83071 -11.71747 -11.45349 -11.34335 -10.96038 -10.83826 -10.58108 -10.44335 -10.25426 -10.07207 -9.85136 -9.65753 -9.48674 -9.28518 -8.46148 -8.33171 -7.87548 -6.10277 -4.14944 1.24849 1.58387 2.20775 2.25462 2.43447 2.98824 3.26420 3.33393 3.36948 3.75790 3.91501 4.13020 4.36831 4.41203 4.49822 4.56118 4.81880 4.88553 4.94981 5.05443 5.08227 5.12903 5.26116 5.31044 5.32540 5.38848 5.45975 5.52155 5.61313 5.65189 5.78337 5.92116 5.99475 6.01903 6.03206 6.19244 6.28755 6.47930 6.55797 6.71575 6.90097 7.04231 7.11222 7.50835 7.64485 7.71150 7.80761 7.83411 8.05314 8.23723 8.90893 9.49309 11.01333 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.002080 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.951202 B =13459.473689 C =14987.684147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.129 3.871 4 H 0.119 0.881 5 N -0.713 5.713 6 C 0.515 3.485 7 C -0.171 4.171 8 O -0.543 6.543 9 C 0.508 3.492 10 O -0.505 6.505 11 N -0.665 5.665 12 C 0.175 3.825 13 C -0.194 4.194 14 C -0.061 4.061 15 C -0.224 4.224 16 C 0.165 3.835 17 O -0.312 6.312 18 C 0.065 3.935 19 C 0.024 3.976 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.163 4.163 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.412 0.588 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.386 -16.105 1.256 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.020 3.980 4 H 0.137 0.863 5 N -0.368 5.368 6 C 0.303 3.697 7 C -0.230 4.230 8 O -0.421 6.421 9 C 0.294 3.706 10 O -0.378 6.378 11 N -0.311 5.311 12 C 0.082 3.918 13 C -0.214 4.214 14 C -0.079 4.079 15 C -0.243 4.243 16 C 0.117 3.883 17 O -0.225 6.225 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.209 1.209 28 C -0.184 4.184 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.248 0.752 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.535 -15.363 1.077 28.126 hybrid contribution 1.347 -0.260 0.187 1.384 sum -22.188 -15.623 1.264 27.166 Atomic orbital electron populations 1.21801 0.93686 1.01169 1.03441 1.21947 0.98108 0.93706 1.03185 1.20853 0.90518 0.96038 0.90628 0.86342 1.45905 1.17346 1.57648 1.15865 1.20802 0.80899 0.77564 0.90412 1.21846 1.03702 1.02681 0.94818 1.90733 1.51247 1.59083 1.40995 1.20764 0.90291 0.77979 0.81599 1.90799 1.64737 1.43122 1.39124 1.43353 1.06444 1.56490 1.24827 1.17256 0.82043 0.93636 0.98893 1.20611 0.94567 0.98248 1.08008 1.20673 0.93282 0.96909 0.97076 1.21411 1.01135 0.95644 1.06129 1.18946 0.91404 0.86686 0.91284 1.86195 1.24276 1.36374 1.75638 1.23363 0.74907 1.02655 0.99996 1.19137 0.95064 0.89605 0.97470 1.21002 0.91587 1.03786 1.39994 0.92286 1.25004 0.98950 0.95411 0.94916 1.69993 1.35878 1.07156 1.39682 0.86425 0.84861 0.78094 0.77964 1.19639 1.20837 1.20850 1.20242 0.92203 0.98813 1.07106 0.92933 0.91757 0.92241 0.90896 0.90552 0.75036 0.90283 0.88630 0.88442 0.75154 0.85997 0.85594 0.84960 0.93010 0.93008 0.95345 0.95381 0.92755 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.51 37.16 0.32 -0.70 16 2 C -0.13 -0.81 5.55 -26.74 -0.15 -0.96 16 3 C 0.13 1.04 2.68 -69.08 -0.18 0.85 16 4 H 0.12 0.99 7.58 -51.93 -0.39 0.59 16 5 N -0.71 -5.84 4.90 -54.93 -0.27 -6.11 16 6 C 0.52 4.44 6.51 -10.98 -0.07 4.37 16 7 C -0.17 -0.91 10.39 36.01 0.37 -0.53 16 8 O -0.54 -6.33 14.24 5.56 0.08 -6.25 16 9 C 0.51 5.36 6.96 -10.98 -0.08 5.28 16 10 O -0.50 -7.32 13.52 5.55 0.08 -7.24 16 11 N -0.67 -6.21 5.25 -9.88 -0.05 -6.26 16 12 C 0.18 2.24 6.28 -83.72 -0.53 1.72 16 13 C -0.19 -2.16 9.96 -39.37 -0.39 -2.56 16 14 C -0.06 -0.74 10.03 -39.63 -0.40 -1.14 16 15 C -0.22 -3.44 9.04 -39.40 -0.36 -3.80 16 16 C 0.16 2.97 6.68 -39.25 -0.26 2.70 16 17 O -0.31 -6.66 10.13 -19.44 -0.20 -6.86 16 18 C 0.06 1.41 4.68 37.16 0.17 1.58 16 19 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 20 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 24 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C -0.16 -2.68 8.59 -39.25 -0.34 -3.02 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.51 7.85 -51.93 -0.41 0.11 16 31 H 0.06 0.50 5.65 -51.93 -0.29 0.21 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.32 7.32 -51.93 -0.38 -0.06 16 34 H 0.41 3.20 7.63 -40.82 -0.31 2.89 16 35 H 0.08 0.30 7.91 -51.93 -0.41 -0.11 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.41 2.28 8.03 -40.82 -0.33 1.96 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.13 1.98 6.29 -52.48 -0.33 1.65 16 42 H 0.05 1.05 7.67 -51.92 -0.40 0.66 16 43 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.14 2.48 6.41 -52.49 -0.34 2.14 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -34.84 388.96 -8.14 -42.98 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.91 Total: 2.61 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.45 Total: -9.13 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.42 Total: -38.28 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.04 Total: -20.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.84 -8.14 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601004581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.349 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds