Wall clock time and date at job start Tue Mar 31 2020 18:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47286 * 2 1 4 4 H 1.09006 * 109.47181 * 55.00178 * 3 2 1 5 5 N 1.46498 * 109.47329 * 294.99930 * 3 2 1 6 6 C 1.34779 * 119.99663 * 85.00279 * 5 3 2 7 7 C 1.50702 * 119.99654 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00183 * 359.97438 * 6 5 3 9 9 C 1.50706 * 109.47269 * 175.00012 * 3 2 1 10 10 O 1.21286 * 120.00189 * 120.00087 * 9 3 2 11 11 N 1.34773 * 119.99707 * 300.00349 * 9 3 2 12 12 C 1.39921 * 119.99939 * 185.26895 * 11 9 3 13 13 C 1.38933 * 120.04319 * 213.34575 * 12 11 9 14 14 C 1.38114 * 120.04190 * 179.97438 * 13 12 11 15 15 C 1.38216 * 120.12381 * 359.67942 * 14 13 12 16 16 C 1.38762 * 120.08215 * 0.59428 * 15 14 13 17 17 O 1.35905 * 120.01878 * 179.70358 * 16 15 14 18 18 C 1.42893 * 117.00029 * 359.72620 * 17 16 15 19 19 C 1.53000 * 109.47333 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47294 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00551 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00222 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47076 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47447 * 119.99676 * 24 22 20 27 27 H 1.48502 * 109.47542 * 240.00196 * 24 22 20 28 28 C 1.38620 * 119.96122 * 359.42805 * 16 15 14 29 29 H 1.09005 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47638 * 299.99977 * 1 2 3 31 31 H 1.09006 * 109.47152 * 60.00018 * 1 2 3 32 32 H 1.09003 * 109.46961 * 239.99954 * 2 1 3 33 33 H 1.08999 * 109.46710 * 120.00483 * 2 1 3 34 34 H 0.96996 * 120.00418 * 265.00044 * 5 3 2 35 35 H 1.08993 * 109.47372 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.47017 * 119.99748 * 7 6 5 37 37 H 1.08999 * 109.47204 * 239.99424 * 7 6 5 38 38 H 0.97006 * 120.00285 * 5.26661 * 11 9 3 39 39 H 1.08001 * 119.97956 * 359.97261 * 13 12 11 40 40 H 1.07999 * 119.93926 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.96043 * 180.32142 * 15 14 13 42 42 H 1.09009 * 109.47436 * 300.00048 * 18 17 16 43 43 H 1.08998 * 109.47501 * 60.00531 * 18 17 16 44 44 H 1.09000 * 109.46753 * 300.00290 * 19 18 17 45 45 H 1.09007 * 109.47212 * 59.99762 * 19 18 17 46 46 H 0.97003 * 119.99845 * 179.97438 * 23 22 20 47 47 H 1.07998 * 120.06626 * 180.29384 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6644 -1.3668 7 6 0.0363 3.3377 -2.6547 8 8 -0.3395 2.6320 -0.4343 9 6 3.5419 1.4442 0.1238 10 8 4.2217 1.9435 -0.7478 11 7 4.1297 0.8910 1.2031 12 6 5.5151 0.9893 1.3726 13 6 6.2164 -0.0437 1.9820 14 6 7.5840 0.0532 2.1488 15 6 8.2593 1.1743 1.7045 16 6 7.5633 2.2116 1.1003 17 8 8.2278 3.3160 0.6694 18 6 9.6414 3.3444 0.8760 19 6 10.2104 4.6558 0.3307 20 6 11.7011 4.6860 0.5492 21 1 12.1936 3.8533 1.0294 22 6 12.4365 5.7767 0.1360 23 7 11.8368 6.7909 -0.4483 24 14 14.2844 5.8139 0.4062 25 1 14.7115 4.5612 1.0797 26 1 14.9740 5.9320 -0.9037 27 1 14.6369 6.9781 1.2580 28 6 6.1906 2.1182 0.9315 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.2719 2.1231 -1.9977 35 1 0.8550 3.2664 -3.3708 36 1 -0.8474 2.8471 -3.0627 37 1 -0.1870 4.3871 -2.4622 38 1 3.5923 0.4246 1.8624 39 1 5.6918 -0.9231 2.3254 40 1 8.1274 -0.7507 2.6231 41 1 9.3295 1.2450 1.8317 42 1 9.8543 3.2721 1.9427 43 1 10.1016 2.5043 0.3560 44 1 9.9975 4.7285 -0.7358 45 1 9.7502 5.4958 0.8511 46 1 12.3541 7.5584 -0.7387 47 1 5.6478 2.9225 0.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601004581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:12 Heat of formation + Delta-G solvation = -119.846836 kcal Electronic energy + Delta-G solvation = -27842.711917 eV Core-core repulsion = 23796.487145 eV Total energy + Delta-G solvation = -4046.224772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07982 -41.02846 -40.27554 -38.53392 -36.49784 -35.87956 -35.39379 -33.60750 -32.61473 -31.17948 -30.65748 -30.32437 -27.94543 -26.98827 -24.44048 -23.59919 -23.20091 -22.47213 -21.55181 -21.30505 -19.83977 -18.86368 -18.38804 -17.84691 -17.32774 -17.06631 -16.97291 -16.94482 -16.65954 -16.56801 -16.25367 -15.87081 -15.26261 -14.98724 -14.57550 -14.49803 -14.41006 -14.32566 -14.28436 -13.66321 -13.39973 -13.34000 -13.26511 -13.10745 -12.90525 -12.77812 -12.66890 -12.54627 -12.50456 -12.21927 -11.90081 -11.80942 -11.60388 -11.41544 -11.29816 -11.02634 -10.95878 -10.64585 -10.19041 -9.46201 -9.04662 -8.27947 -6.42083 0.17690 0.47085 1.34860 1.40261 1.41694 1.51329 1.55272 1.68876 2.22035 2.34478 2.52078 2.80479 3.06418 3.34289 3.77437 3.88935 3.90233 3.99567 4.14958 4.19094 4.23776 4.25480 4.32195 4.42523 4.44345 4.52442 4.56344 4.64416 4.67317 4.73490 4.81145 4.97981 5.04809 5.10857 5.20684 5.24252 5.30274 5.31103 5.39430 5.43695 5.44049 5.50410 5.66782 5.87457 6.05187 6.23646 6.45153 6.54224 6.73131 6.91807 7.16307 7.28227 8.85652 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.002080 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.951202 B =13459.473689 C =14987.684147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.134 3.866 4 H 0.117 0.883 5 N -0.713 5.713 6 C 0.511 3.489 7 C -0.167 4.167 8 O -0.577 6.577 9 C 0.509 3.491 10 O -0.548 6.548 11 N -0.649 5.649 12 C 0.178 3.822 13 C -0.171 4.171 14 C -0.052 4.052 15 C -0.233 4.233 16 C 0.124 3.876 17 O -0.346 6.346 18 C 0.085 3.915 19 C 0.027 3.973 20 C -0.544 4.544 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.979 3.021 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.277 1.277 28 C -0.185 4.185 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.414 0.586 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.434 0.566 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.065 0.935 43 H 0.062 0.938 44 H -0.005 1.005 45 H -0.004 1.004 46 H 0.267 0.733 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.281 -19.574 2.739 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.025 3.975 4 H 0.135 0.865 5 N -0.368 5.368 6 C 0.301 3.699 7 C -0.226 4.226 8 O -0.457 6.457 9 C 0.297 3.703 10 O -0.424 6.424 11 N -0.297 5.297 12 C 0.084 3.916 13 C -0.191 4.191 14 C -0.071 4.071 15 C -0.253 4.253 16 C 0.077 3.923 17 O -0.260 6.260 18 C 0.011 3.989 19 C -0.011 4.011 20 C -0.581 4.581 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.803 3.197 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.202 1.202 28 C -0.207 4.207 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.252 0.748 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.189 0.811 40 H 0.184 0.816 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.075 0.925 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.466 -18.879 2.587 30.228 hybrid contribution 1.150 0.752 -0.263 1.399 sum -22.316 -18.127 2.324 28.845 Atomic orbital electron populations 1.21735 0.94192 1.01627 1.02104 1.21948 0.97424 0.92187 1.04652 1.20904 0.88435 0.97542 0.90637 0.86497 1.46003 1.17329 1.57486 1.15966 1.21368 0.80476 0.77047 0.91051 1.21886 1.04810 1.02491 0.93448 1.90713 1.52130 1.60456 1.42388 1.21218 0.91109 0.76863 0.81133 1.90797 1.65853 1.44886 1.40868 1.43245 1.05363 1.56094 1.24954 1.17377 0.83449 0.92779 0.98027 1.21140 0.94290 0.98496 1.05140 1.21155 0.93931 0.96367 0.95603 1.21549 1.01296 0.96085 1.06336 1.19252 0.92024 0.86921 0.94053 1.86095 1.23703 1.38940 1.77277 1.22894 0.75798 0.99900 1.00331 1.18984 0.95438 0.91434 0.95202 1.21423 0.92202 1.04437 1.40060 0.90814 1.26107 1.04813 0.94800 0.94289 1.70146 1.38266 1.08032 1.40766 0.85187 0.77661 0.78786 0.78110 1.17870 1.20274 1.20247 1.20218 0.91901 0.99952 1.08583 0.91470 0.92841 0.93890 0.90690 0.87763 0.74825 0.88761 0.87300 0.88164 0.72544 0.81143 0.81612 0.84997 0.91721 0.91981 0.98678 0.98531 0.92453 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.51 71.98 0.61 -1.15 16 2 C -0.12 -1.26 5.55 30.59 0.17 -1.09 16 3 C 0.13 2.05 2.68 44.24 0.12 2.17 16 4 H 0.12 1.88 7.58 -2.38 -0.02 1.86 16 5 N -0.71 -11.68 4.90 -446.10 -2.19 -13.86 16 6 C 0.51 8.82 6.51 87.66 0.57 9.39 16 7 C -0.17 -1.68 10.39 71.24 0.74 -0.94 16 8 O -0.58 -13.58 14.24 -3.02 -0.04 -13.62 16 9 C 0.51 10.44 6.96 87.66 0.61 11.05 16 10 O -0.55 -16.43 13.52 -3.05 -0.04 -16.48 16 11 N -0.65 -10.70 5.25 -303.55 -1.59 -12.29 16 12 C 0.18 4.23 6.28 38.14 0.24 4.47 16 13 C -0.17 -3.05 9.96 22.41 0.22 -2.83 16 14 C -0.05 -1.07 10.03 22.24 0.22 -0.85 16 15 C -0.23 -6.92 9.04 22.39 0.20 -6.72 16 16 C 0.12 4.61 6.68 22.49 0.15 4.76 16 17 O -0.35 -15.79 10.13 -92.48 -0.94 -16.72 16 18 C 0.08 3.85 4.68 71.98 0.34 4.19 16 19 C 0.03 1.51 5.34 29.85 0.16 1.66 16 20 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 21 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 22 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 23 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 24 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 C -0.19 -6.31 8.59 22.48 0.19 -6.12 16 29 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.05 0.80 7.85 -2.39 -0.02 0.78 16 31 H 0.04 0.69 5.65 -2.38 -0.01 0.68 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.48 7.32 -2.39 -0.02 0.46 16 34 H 0.41 6.56 7.63 -92.71 -0.71 5.85 16 35 H 0.09 0.65 7.91 -2.39 -0.02 0.63 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.43 3.19 8.03 -92.70 -0.74 2.44 16 39 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.13 3.83 6.29 -2.91 -0.02 3.81 16 42 H 0.06 2.70 7.67 -2.38 -0.02 2.68 16 43 H 0.06 2.63 7.65 -2.39 -0.02 2.61 16 44 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 46 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 47 H 0.11 4.31 6.41 -2.91 -0.02 4.29 16 Total: -1.00 -81.51 388.96 2.31 -79.20 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.45 Total: 17.96 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.24 Total: -12.56 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.50 Total: -83.71 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -1.02 Total: -46.83 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -81.51 2.31 -79.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601004581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.643 kcal (2) G-P(sol) polarization free energy of solvation -81.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds