Wall clock time and date at job start Tue Mar 31 2020 18:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46859 * 2 1 4 4 H 1.08999 * 109.47004 * 304.99964 * 3 2 1 5 5 N 1.46501 * 109.47020 * 64.99659 * 3 2 1 6 6 C 1.34776 * 120.00315 * 275.00100 * 5 3 2 7 7 C 1.50697 * 119.99934 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99783 * 359.97438 * 6 5 3 9 9 C 1.50701 * 109.47417 * 185.00058 * 3 2 1 10 10 O 1.21283 * 119.99729 * 240.00332 * 9 3 2 11 11 N 1.34775 * 119.99767 * 59.99892 * 9 3 2 12 12 C 1.39918 * 119.99727 * 184.63189 * 11 9 3 13 13 C 1.38939 * 120.04214 * 144.92872 * 12 11 9 14 14 C 1.38120 * 120.03675 * 179.97438 * 13 12 11 15 15 C 1.38209 * 120.12760 * 359.76317 * 14 13 12 16 16 C 1.38756 * 120.08340 * 0.51222 * 15 14 13 17 17 O 1.35907 * 120.02052 * 179.74319 * 16 15 14 18 18 C 1.42897 * 116.99638 * 359.72479 * 17 16 15 19 19 C 1.53006 * 109.46800 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47157 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00217 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00124 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99833 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00129 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47099 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47516 * 119.99876 * 24 22 20 27 27 H 1.48498 * 109.46646 * 240.00012 * 24 22 20 28 28 C 1.38624 * 119.96034 * 359.46731 * 16 15 14 29 29 H 1.09003 * 109.47379 * 60.00690 * 1 2 3 30 30 H 1.09007 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47655 * 299.99534 * 1 2 3 32 32 H 1.08999 * 109.47148 * 240.00327 * 2 1 3 33 33 H 1.08996 * 109.47226 * 119.99983 * 2 1 3 34 34 H 0.97003 * 119.99633 * 95.00152 * 5 3 2 35 35 H 1.09005 * 109.46883 * 89.99859 * 7 6 5 36 36 H 1.08996 * 109.47188 * 210.00031 * 7 6 5 37 37 H 1.09000 * 109.47129 * 330.00558 * 7 6 5 38 38 H 0.97003 * 120.00328 * 4.62639 * 11 9 3 39 39 H 1.07997 * 119.97720 * 359.97430 * 13 12 11 40 40 H 1.08003 * 119.93284 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.95788 * 180.27809 * 15 14 13 42 42 H 1.08998 * 109.47610 * 299.99861 * 18 17 16 43 43 H 1.09002 * 109.47104 * 60.00482 * 18 17 16 44 44 H 1.09008 * 109.47063 * 299.99805 * 19 18 17 45 45 H 1.08999 * 109.47464 * 59.99709 * 19 18 17 46 46 H 0.97000 * 119.99474 * 179.97438 * 23 22 20 47 47 H 1.08007 * 120.06384 * 180.25398 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6522 2.0975 1.2518 6 6 0.4349 2.6644 1.3669 7 6 0.0360 3.3376 2.6548 8 8 -0.3394 2.6326 0.4340 9 6 3.5418 1.4445 -0.1238 10 8 4.2215 1.9438 0.7478 11 7 4.1297 0.8914 -1.2032 12 6 5.5245 0.8061 -1.2733 13 6 6.1246 -0.2877 -1.8846 14 6 7.5015 -0.3715 -1.9543 15 6 8.2856 0.6339 -1.4209 16 6 7.6918 1.7259 -0.8042 17 8 8.4641 2.7113 -0.2755 18 6 9.8802 2.5549 -0.3852 19 6 10.5773 3.7531 0.2625 20 6 12.0708 3.5885 0.1462 21 1 12.4817 2.7163 -0.3405 22 6 12.9126 4.5514 0.6612 23 7 12.4122 5.6137 1.2534 24 14 14.7638 4.3477 0.5165 25 1 15.0684 3.0764 -0.1878 26 1 15.3287 5.4867 -0.2508 27 1 15.3660 4.3179 1.8735 28 6 6.3102 1.8138 -0.7326 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2718 2.1232 1.9978 35 1 0.3211 4.3890 2.6186 36 1 -1.0429 3.2580 2.7874 37 1 0.5415 2.8527 3.4900 38 1 3.5858 0.5523 -1.9313 39 1 5.5141 -1.0729 -2.3056 40 1 7.9663 -1.2224 -2.4303 41 1 9.3619 0.5678 -1.4809 42 1 10.1852 1.6397 0.1223 43 1 10.1589 2.4971 -1.4374 44 1 10.2725 4.6686 -0.2447 45 1 10.2985 3.8106 1.3146 46 1 13.0045 6.2909 1.6161 47 1 5.8461 2.6651 -0.2566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601004582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:15 Heat of formation + Delta-G solvation = -95.034606 kcal Electronic energy + Delta-G solvation = -27836.526956 eV Core-core repulsion = 23791.378123 eV Total energy + Delta-G solvation = -4045.148833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19724 -40.03437 -39.19557 -37.30303 -35.75922 -34.81314 -33.36613 -32.95474 -30.91517 -30.19913 -29.76786 -29.12884 -27.19710 -25.04946 -23.34359 -22.47790 -22.15269 -21.20510 -20.75160 -20.26149 -18.68429 -17.88921 -17.09574 -16.49894 -16.37516 -16.12768 -15.94192 -15.57845 -15.38084 -15.26296 -15.00358 -14.55132 -14.41222 -14.26209 -13.81008 -13.51617 -13.13154 -12.97768 -12.89665 -12.76116 -12.52205 -12.34785 -12.32256 -11.95108 -11.83157 -11.70867 -11.46150 -11.33633 -10.95718 -10.84712 -10.58446 -10.41052 -10.25837 -10.02269 -9.84860 -9.65603 -9.48396 -9.28405 -8.46262 -8.34991 -7.87220 -6.10271 -4.14946 1.26460 1.58671 2.19755 2.22886 2.44525 2.99200 3.26378 3.33346 3.36912 3.76178 3.91434 4.14025 4.37455 4.41152 4.48917 4.56392 4.82990 4.90277 4.95920 5.04845 5.08317 5.13579 5.26130 5.31599 5.33375 5.39503 5.46198 5.53260 5.62518 5.66101 5.79721 5.92209 5.99912 6.02069 6.03286 6.20103 6.30568 6.48215 6.56672 6.72073 6.90838 7.04813 7.10833 7.51017 7.64582 7.71561 7.80940 7.83032 8.05687 8.23769 8.90897 9.49332 11.01342 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.002056 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.572850 B =13613.551988 C =15082.600696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.129 3.871 4 H 0.118 0.882 5 N -0.713 5.713 6 C 0.515 3.485 7 C -0.173 4.173 8 O -0.543 6.543 9 C 0.507 3.493 10 O -0.505 6.505 11 N -0.665 5.665 12 C 0.172 3.828 13 C -0.193 4.193 14 C -0.062 4.062 15 C -0.223 4.223 16 C 0.163 3.837 17 O -0.312 6.312 18 C 0.065 3.935 19 C 0.024 3.976 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.162 4.162 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.412 0.588 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.891 -13.098 -3.291 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.020 3.980 4 H 0.135 0.865 5 N -0.368 5.368 6 C 0.303 3.697 7 C -0.232 4.232 8 O -0.420 6.420 9 C 0.293 3.707 10 O -0.379 6.379 11 N -0.310 5.310 12 C 0.078 3.922 13 C -0.213 4.213 14 C -0.081 4.081 15 C -0.243 4.243 16 C 0.115 3.885 17 O -0.225 6.225 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.183 4.183 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.248 0.752 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.005 -12.385 -3.089 28.075 hybrid contribution 1.356 -0.363 -0.144 1.411 sum -23.649 -12.748 -3.232 27.060 Atomic orbital electron populations 1.21803 0.93717 1.01170 1.03404 1.21937 0.98010 0.93645 1.03274 1.20832 0.90521 0.96048 0.90570 0.86465 1.45865 1.17355 1.57683 1.15915 1.20801 0.80876 0.77566 0.90436 1.21881 1.04246 1.02375 0.94702 1.90733 1.51306 1.58896 1.41103 1.20771 0.90306 0.77848 0.81729 1.90786 1.64645 1.42497 1.39929 1.43305 1.05503 1.61047 1.21182 1.17275 0.81551 0.93993 0.99337 1.20627 0.95161 0.97786 1.07749 1.20670 0.92649 0.97655 0.97097 1.21416 1.01125 0.96221 1.05500 1.18982 0.90785 0.87847 0.90887 1.86198 1.20780 1.42131 1.73355 1.23360 0.74703 1.02403 1.00455 1.19138 0.93956 0.91406 0.96777 1.21003 0.90265 1.06707 1.38392 0.92291 1.25003 0.99245 0.95061 0.94966 1.69993 1.35165 1.09799 1.37749 0.86427 0.84889 0.78167 0.77874 1.19640 1.20845 1.20842 1.20404 0.90717 1.00679 1.06481 0.91796 0.92937 0.92237 0.90480 0.90920 0.75023 0.88514 0.88731 0.89970 0.75152 0.86008 0.85615 0.84985 0.93029 0.93020 0.95376 0.95345 0.92757 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.51 37.16 0.32 -0.71 16 2 C -0.13 -0.82 5.56 -26.73 -0.15 -0.97 16 3 C 0.13 1.03 2.66 -69.08 -0.18 0.85 16 4 H 0.12 0.94 7.58 -51.93 -0.39 0.55 16 5 N -0.71 -5.79 4.90 -54.93 -0.27 -6.06 16 6 C 0.52 4.39 6.51 -10.99 -0.07 4.32 16 7 C -0.17 -0.90 10.30 36.00 0.37 -0.53 16 8 O -0.54 -6.26 14.24 5.56 0.08 -6.18 16 9 C 0.51 5.32 7.07 -10.99 -0.08 5.24 16 10 O -0.51 -7.29 13.27 5.56 0.07 -7.21 16 11 N -0.66 -6.16 5.15 -9.88 -0.05 -6.21 16 12 C 0.17 2.19 6.30 -83.72 -0.53 1.66 16 13 C -0.19 -2.14 9.96 -39.37 -0.39 -2.53 16 14 C -0.06 -0.75 10.03 -39.64 -0.40 -1.15 16 15 C -0.22 -3.43 9.04 -39.40 -0.36 -3.78 16 16 C 0.16 2.93 6.68 -39.25 -0.26 2.67 16 17 O -0.31 -6.65 10.13 -19.45 -0.20 -6.85 16 18 C 0.06 1.41 4.68 37.16 0.17 1.58 16 19 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 21 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 24 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C -0.16 -2.67 8.64 -39.25 -0.34 -3.00 16 29 H 0.06 0.51 7.85 -51.93 -0.41 0.10 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.50 5.65 -51.93 -0.29 0.21 16 32 H 0.08 0.34 7.53 -51.93 -0.39 -0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.41 3.20 7.79 -40.82 -0.32 2.88 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.41 2.28 8.33 -40.82 -0.34 1.94 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.13 1.98 6.29 -52.48 -0.33 1.65 16 42 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 43 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 44 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.14 2.57 6.22 -52.48 -0.33 2.25 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -34.74 389.41 -8.18 -42.91 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.94 Total: 2.63 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.45 Total: -9.30 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.42 Total: -38.17 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.04 Total: -20.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.74 -8.18 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601004582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.122 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds