Wall clock time and date at job start Tue Mar 31 2020 18:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46859 * 2 1 4 4 H 1.08999 * 109.47004 * 304.99964 * 3 2 1 5 5 N 1.46501 * 109.47020 * 64.99659 * 3 2 1 6 6 C 1.34776 * 120.00315 * 275.00100 * 5 3 2 7 7 C 1.50697 * 119.99934 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99783 * 359.97438 * 6 5 3 9 9 C 1.50701 * 109.47417 * 185.00058 * 3 2 1 10 10 O 1.21283 * 119.99729 * 240.00332 * 9 3 2 11 11 N 1.34775 * 119.99767 * 59.99892 * 9 3 2 12 12 C 1.39918 * 119.99727 * 184.63189 * 11 9 3 13 13 C 1.38939 * 120.04214 * 144.92872 * 12 11 9 14 14 C 1.38120 * 120.03675 * 179.97438 * 13 12 11 15 15 C 1.38209 * 120.12760 * 359.76317 * 14 13 12 16 16 C 1.38756 * 120.08340 * 0.51222 * 15 14 13 17 17 O 1.35907 * 120.02052 * 179.74319 * 16 15 14 18 18 C 1.42897 * 116.99638 * 359.72479 * 17 16 15 19 19 C 1.53006 * 109.46800 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47157 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00217 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00124 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99833 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00129 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47099 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47516 * 119.99876 * 24 22 20 27 27 H 1.48498 * 109.46646 * 240.00012 * 24 22 20 28 28 C 1.38624 * 119.96034 * 359.46731 * 16 15 14 29 29 H 1.09003 * 109.47379 * 60.00690 * 1 2 3 30 30 H 1.09007 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47655 * 299.99534 * 1 2 3 32 32 H 1.08999 * 109.47148 * 240.00327 * 2 1 3 33 33 H 1.08996 * 109.47226 * 119.99983 * 2 1 3 34 34 H 0.97003 * 119.99633 * 95.00152 * 5 3 2 35 35 H 1.09005 * 109.46883 * 89.99859 * 7 6 5 36 36 H 1.08996 * 109.47188 * 210.00031 * 7 6 5 37 37 H 1.09000 * 109.47129 * 330.00558 * 7 6 5 38 38 H 0.97003 * 120.00328 * 4.62639 * 11 9 3 39 39 H 1.07997 * 119.97720 * 359.97430 * 13 12 11 40 40 H 1.08003 * 119.93284 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.95788 * 180.27809 * 15 14 13 42 42 H 1.08998 * 109.47610 * 299.99861 * 18 17 16 43 43 H 1.09002 * 109.47104 * 60.00482 * 18 17 16 44 44 H 1.09008 * 109.47063 * 299.99805 * 19 18 17 45 45 H 1.08999 * 109.47464 * 59.99709 * 19 18 17 46 46 H 0.97000 * 119.99474 * 179.97438 * 23 22 20 47 47 H 1.08007 * 120.06384 * 180.25398 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6522 2.0975 1.2518 6 6 0.4349 2.6644 1.3669 7 6 0.0360 3.3376 2.6548 8 8 -0.3394 2.6326 0.4340 9 6 3.5418 1.4445 -0.1238 10 8 4.2215 1.9438 0.7478 11 7 4.1297 0.8914 -1.2032 12 6 5.5245 0.8061 -1.2733 13 6 6.1246 -0.2877 -1.8846 14 6 7.5015 -0.3715 -1.9543 15 6 8.2856 0.6339 -1.4209 16 6 7.6918 1.7259 -0.8042 17 8 8.4641 2.7113 -0.2755 18 6 9.8802 2.5549 -0.3852 19 6 10.5773 3.7531 0.2625 20 6 12.0708 3.5885 0.1462 21 1 12.4817 2.7163 -0.3405 22 6 12.9126 4.5514 0.6612 23 7 12.4122 5.6137 1.2534 24 14 14.7638 4.3477 0.5165 25 1 15.0684 3.0764 -0.1878 26 1 15.3287 5.4867 -0.2508 27 1 15.3660 4.3179 1.8735 28 6 6.3102 1.8138 -0.7326 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2718 2.1232 1.9978 35 1 0.3211 4.3890 2.6186 36 1 -1.0429 3.2580 2.7874 37 1 0.5415 2.8527 3.4900 38 1 3.5858 0.5523 -1.9313 39 1 5.5141 -1.0729 -2.3056 40 1 7.9663 -1.2224 -2.4303 41 1 9.3619 0.5678 -1.4809 42 1 10.1852 1.6397 0.1223 43 1 10.1589 2.4971 -1.4374 44 1 10.2725 4.6686 -0.2447 45 1 10.2985 3.8106 1.3146 46 1 13.0045 6.2909 1.6161 47 1 5.8461 2.6651 -0.2566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601004582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:14 Heat of formation + Delta-G solvation = -119.426164 kcal Electronic energy + Delta-G solvation = -27837.584653 eV Core-core repulsion = 23791.378123 eV Total energy + Delta-G solvation = -4046.206530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07281 -41.02061 -40.26946 -38.52436 -36.49202 -35.87262 -35.39030 -33.59598 -32.60918 -31.18469 -30.64518 -30.31577 -27.94036 -26.98387 -24.42706 -23.57266 -23.20743 -22.45848 -21.53365 -21.34105 -19.82766 -18.85067 -18.38291 -17.81618 -17.34463 -17.06125 -16.95068 -16.92546 -16.65272 -16.56632 -16.27929 -15.91267 -15.20132 -14.99064 -14.57548 -14.49187 -14.39925 -14.32461 -14.28332 -13.64111 -13.39962 -13.34123 -13.25689 -13.09332 -12.91392 -12.77345 -12.66245 -12.54739 -12.49549 -12.23101 -11.90263 -11.79144 -11.60441 -11.41451 -11.26329 -10.98331 -10.94768 -10.64511 -10.18275 -9.47093 -9.04675 -8.27852 -6.42003 0.19380 0.47840 1.33656 1.40260 1.41731 1.51896 1.55320 1.69705 2.22652 2.34951 2.52705 2.80363 3.06506 3.35526 3.78213 3.89135 3.91282 3.99900 4.15332 4.20441 4.24958 4.25643 4.33090 4.43496 4.46181 4.53770 4.57195 4.64109 4.69187 4.74410 4.81320 4.98587 5.05396 5.11683 5.22557 5.25605 5.30655 5.31704 5.40301 5.43876 5.44166 5.51162 5.66954 5.88210 6.05373 6.24429 6.45386 6.55081 6.73223 6.92818 7.16737 7.28331 8.85744 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.002056 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.572850 B =13613.551988 C =15082.600696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.135 3.865 4 H 0.119 0.881 5 N -0.714 5.714 6 C 0.512 3.488 7 C -0.169 4.169 8 O -0.576 6.576 9 C 0.509 3.491 10 O -0.548 6.548 11 N -0.648 5.648 12 C 0.175 3.825 13 C -0.169 4.169 14 C -0.054 4.054 15 C -0.233 4.233 16 C 0.122 3.878 17 O -0.346 6.346 18 C 0.085 3.915 19 C 0.027 3.973 20 C -0.544 4.544 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.979 3.021 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.277 1.277 28 C -0.185 4.185 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.434 0.566 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.064 0.936 44 H -0.004 1.004 45 H -0.005 1.005 46 H 0.267 0.733 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 -16.465 -4.923 30.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.026 3.974 4 H 0.136 0.864 5 N -0.368 5.368 6 C 0.301 3.699 7 C -0.228 4.228 8 O -0.456 6.456 9 C 0.296 3.704 10 O -0.425 6.425 11 N -0.296 5.296 12 C 0.081 3.919 13 C -0.189 4.189 14 C -0.072 4.072 15 C -0.252 4.252 16 C 0.076 3.924 17 O -0.260 6.260 18 C 0.011 3.989 19 C -0.011 4.011 20 C -0.581 4.581 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.802 3.198 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.203 1.203 28 C -0.206 4.206 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.274 0.726 39 H 0.189 0.811 40 H 0.183 0.817 41 H 0.150 0.850 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.015 0.985 45 H 0.013 0.987 46 H 0.075 0.925 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.237 -15.792 -4.753 30.148 hybrid contribution 1.244 0.641 0.338 1.440 sum -23.993 -15.151 -4.415 28.718 Atomic orbital electron populations 1.21734 0.94165 1.01595 1.02128 1.21934 0.97374 0.92256 1.04580 1.20882 0.88408 0.97448 0.90668 0.86355 1.45961 1.17345 1.57521 1.16015 1.21360 0.80443 0.77041 0.91070 1.21914 1.04825 1.02489 0.93543 1.90713 1.52167 1.60268 1.42472 1.21234 0.91138 0.76748 0.81249 1.90788 1.65764 1.44296 1.41631 1.43202 1.04379 1.60444 1.21559 1.17394 0.82745 0.93408 0.98356 1.21150 0.95269 0.97389 1.05090 1.21150 0.93017 0.97453 0.95591 1.21551 1.01575 0.96298 1.05767 1.19286 0.91042 0.88653 0.93460 1.86098 1.20343 1.44445 1.75122 1.22890 0.75410 1.00066 1.00551 1.18986 0.94783 0.92467 0.94823 1.21424 0.90889 1.07323 1.38487 0.90823 1.26106 1.05162 0.94484 0.94253 1.70146 1.37403 1.10896 1.38761 0.85188 0.77604 0.78820 0.78140 1.17872 1.20244 1.20276 1.20375 0.90648 1.01511 1.08060 0.92740 0.91562 0.93895 0.87797 0.90931 0.74851 0.87871 0.88141 0.88122 0.72557 0.81144 0.81655 0.85047 0.92003 0.91747 0.98539 0.98666 0.92455 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.51 71.98 0.61 -1.16 16 2 C -0.12 -1.28 5.56 30.59 0.17 -1.11 16 3 C 0.13 2.03 2.66 44.25 0.12 2.15 16 4 H 0.12 1.81 7.58 -2.39 -0.02 1.79 16 5 N -0.71 -11.51 4.90 -446.09 -2.19 -13.69 16 6 C 0.51 8.65 6.51 87.66 0.57 9.22 16 7 C -0.17 -1.65 10.30 71.24 0.73 -0.92 16 8 O -0.58 -13.33 14.24 -3.03 -0.04 -13.37 16 9 C 0.51 10.34 7.07 87.66 0.62 10.96 16 10 O -0.55 -16.40 13.27 -3.04 -0.04 -16.44 16 11 N -0.65 -10.59 5.15 -303.56 -1.56 -12.16 16 12 C 0.18 4.13 6.30 38.14 0.24 4.37 16 13 C -0.17 -2.99 9.96 22.41 0.22 -2.77 16 14 C -0.05 -1.10 10.03 22.23 0.22 -0.88 16 15 C -0.23 -6.89 9.04 22.39 0.20 -6.69 16 16 C 0.12 4.53 6.68 22.49 0.15 4.68 16 17 O -0.35 -15.78 10.13 -92.50 -0.94 -16.72 16 18 C 0.09 3.85 4.68 71.98 0.34 4.19 16 19 C 0.03 1.50 5.34 29.85 0.16 1.66 16 20 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 22 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 23 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 24 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 28 C -0.18 -6.28 8.64 22.48 0.19 -6.09 16 29 H 0.05 0.80 7.85 -2.39 -0.02 0.78 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.04 0.70 5.65 -2.39 -0.01 0.68 16 32 H 0.10 0.53 7.53 -2.39 -0.02 0.51 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.41 6.52 7.79 -92.71 -0.72 5.80 16 35 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.43 3.18 8.33 -92.71 -0.77 2.41 16 39 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.13 3.82 6.29 -2.91 -0.02 3.80 16 42 H 0.06 2.62 7.67 -2.39 -0.02 2.60 16 43 H 0.06 2.69 7.65 -2.39 -0.02 2.67 16 44 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.12 4.51 6.22 -2.91 -0.02 4.49 16 Total: -1.00 -81.27 389.41 2.30 -78.97 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.49 Total: 17.96 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 5.25 Total: -12.92 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -3.47 Total: -83.38 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -1.02 Total: -46.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -81.27 2.30 -78.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601004582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.456 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds