Wall clock time and date at job start Tue Mar 31 2020 18:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 N 1.46496 * 109.47192 * 119.99719 * 2 1 3 5 5 C 1.34775 * 119.99852 * 85.00236 * 4 2 1 6 6 O 1.21286 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00310 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47182 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47107 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47382 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99841 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99999 * 179.97438 * 10 9 8 13 13 C 1.39919 * 119.99780 * 175.48810 * 12 10 9 14 14 C 1.38969 * 120.03650 * 214.84873 * 13 12 10 15 15 C 1.38158 * 120.06368 * 179.72056 * 14 13 12 16 16 C 1.38167 * 120.13972 * 0.56070 * 15 14 13 17 17 C 1.38905 * 120.07508 * 359.71704 * 16 15 14 18 18 O 1.35747 * 120.03882 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99920 * 5.36534 * 18 17 16 20 20 H 1.08010 * 119.99664 * 354.96828 * 19 18 17 21 21 C 1.38652 * 120.00394 * 174.96131 * 19 18 17 22 22 N 1.31565 * 119.99610 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00394 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46998 * 90.00184 * 23 21 19 25 25 H 1.48494 * 109.47114 * 210.00336 * 23 21 19 26 26 H 1.48502 * 109.46993 * 330.00200 * 23 21 19 27 27 C 1.38712 * 120.03870 * 35.12981 * 13 12 10 28 28 H 1.08994 * 109.46854 * 60.00047 * 1 2 3 29 29 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46923 * 299.99625 * 1 2 3 31 31 H 1.08994 * 109.47174 * 239.99923 * 2 1 3 32 32 H 1.08994 * 109.47524 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47097 * 300.00504 * 3 2 1 34 34 H 1.09004 * 109.46849 * 59.99490 * 3 2 1 35 35 H 0.97003 * 120.00730 * 265.00385 * 4 2 1 36 36 H 1.09004 * 109.46800 * 59.99859 * 7 5 4 37 37 H 1.08997 * 109.46926 * 300.00220 * 7 5 4 38 38 H 1.08996 * 109.47186 * 60.00129 * 8 7 5 39 39 H 1.09006 * 109.46876 * 299.99433 * 8 7 5 40 40 H 1.09010 * 109.46995 * 299.99873 * 9 8 7 41 41 H 1.09002 * 109.47702 * 59.99069 * 9 8 7 42 42 H 0.96997 * 120.00090 * 355.49854 * 12 10 9 43 43 H 1.07996 * 119.96735 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.92824 * 180.25956 * 15 14 13 45 45 H 1.08009 * 119.96432 * 179.74527 * 16 15 14 46 46 H 0.96999 * 119.99613 * 179.97438 * 22 21 19 47 47 H 1.08009 * 120.06693 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8592 -2.6677 0.2023 7 6 2.6501 -2.7425 2.4247 8 6 2.7020 -4.2483 2.1587 9 6 3.2120 -4.9696 3.4079 10 6 3.2626 -6.4528 3.1461 11 8 2.9237 -6.8900 2.0668 12 7 3.6845 -7.2934 4.1114 13 6 3.6425 -8.6763 3.9023 14 6 3.3597 -9.5316 4.9605 15 6 3.3124 -10.8967 4.7534 16 6 3.5573 -11.4167 3.4969 17 6 3.8462 -10.5675 2.4363 18 8 4.0872 -11.0792 1.2023 19 6 3.9219 -12.4084 1.0478 20 1 3.6903 -13.0267 1.9026 21 6 4.0490 -12.9815 -0.2083 22 7 4.3314 -12.2284 -1.2494 23 14 3.8192 -14.8229 -0.4225 24 1 2.3911 -15.1136 -0.7075 25 1 4.6564 -15.2980 -1.5531 26 1 4.2274 -15.5208 0.8232 27 6 3.8888 -9.1954 2.6398 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 2.2491 -0.1823 1.9895 36 1 1.9778 -2.5436 3.2594 37 1 3.6493 -2.3824 2.6692 38 1 3.3745 -4.4469 1.3241 39 1 1.7028 -4.6087 1.9140 40 1 4.2111 -4.6092 3.6531 41 1 2.5393 -4.7709 4.2423 42 1 4.0171 -6.9398 4.9512 43 1 3.1727 -9.1285 5.9448 44 1 3.0883 -11.5591 5.5764 45 1 3.5237 -12.4847 3.3391 46 1 4.4207 -12.6294 -2.1281 47 1 4.1129 -8.5330 1.8166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729261014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:00 Heat of formation + Delta-G solvation = -89.008553 kcal Electronic energy + Delta-G solvation = -27212.442021 eV Core-core repulsion = 23167.554497 eV Total energy + Delta-G solvation = -4044.887524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.26520 -39.93286 -38.56886 -36.61157 -36.32111 -34.34944 -34.00497 -32.18999 -31.93652 -29.76653 -28.94407 -27.77442 -27.63802 -25.24844 -23.67811 -22.13252 -21.44510 -21.07864 -20.54404 -20.00349 -18.17918 -17.59885 -17.10712 -16.71149 -16.33019 -16.21297 -15.50764 -15.29341 -15.00739 -14.65972 -14.38693 -14.25767 -14.08500 -13.72979 -13.53998 -13.43432 -13.18164 -12.97513 -12.77367 -12.59906 -12.43307 -12.20142 -12.05826 -11.77726 -11.69076 -11.59600 -11.43222 -11.35651 -11.16334 -10.96507 -10.90171 -10.72639 -10.41597 -10.03546 -9.71486 -9.60374 -9.40671 -9.10314 -8.76129 -7.64447 -7.13215 -6.36322 -3.95671 2.06979 2.39247 2.45255 2.82870 2.93722 3.17809 3.19548 3.23698 3.33945 4.03550 4.34709 4.50856 4.59092 4.63656 4.67480 4.80795 4.83322 4.86355 5.14269 5.15808 5.18526 5.22750 5.25832 5.34533 5.36392 5.36870 5.50531 5.53628 5.66899 5.71964 5.87320 5.87586 6.00817 6.14603 6.18386 6.27487 6.34590 6.44385 6.76324 6.94250 7.08991 7.13982 7.20740 7.39590 7.53652 7.76465 7.85776 8.02154 8.08331 8.44721 9.08243 9.80089 10.81570 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.001952 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.022404 B =14343.754789 C =15981.692166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.510 3.490 6 O -0.529 6.529 7 C -0.139 4.139 8 C -0.093 4.093 9 C -0.137 4.137 10 C 0.501 3.499 11 O -0.504 6.504 12 N -0.673 5.673 13 C 0.174 3.826 14 C -0.237 4.237 15 C -0.059 4.059 16 C -0.246 4.246 17 C 0.166 3.834 18 O -0.174 6.174 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.038 3.962 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.187 4.187 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.405 0.595 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.270 0.730 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 25.434 12.386 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 C -0.217 4.217 4 N -0.386 5.386 5 C 0.296 3.704 6 O -0.404 6.404 7 C -0.179 4.179 8 C -0.131 4.131 9 C -0.177 4.177 10 C 0.288 3.712 11 O -0.377 6.377 12 N -0.318 5.318 13 C 0.081 3.919 14 C -0.258 4.258 15 C -0.078 4.078 16 C -0.266 4.266 17 C 0.111 3.889 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.495 5.495 23 Si 0.767 3.233 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.208 4.208 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.239 0.761 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.080 0.920 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.341 24.776 10.357 27.061 hybrid contribution 0.098 -0.465 0.891 1.010 sum -3.243 24.311 11.248 26.983 Atomic orbital electron populations 1.22186 0.95297 1.02800 1.01952 1.20936 0.94222 0.92775 0.89159 1.22071 1.01700 0.95083 1.02879 1.46171 1.68538 1.07200 1.16721 1.20807 0.77433 0.82038 0.90103 1.90774 1.48828 1.65720 1.35063 1.21693 1.02972 0.96975 0.96289 1.21103 1.04265 0.90831 0.96901 1.21660 1.03730 0.91682 1.00604 1.20793 0.77235 0.88800 0.84400 1.90829 1.45534 1.77961 1.23390 1.43433 1.64341 1.04909 1.19104 1.17207 0.99297 0.81377 0.94057 1.20264 1.14590 0.93456 0.97499 1.20494 0.97285 0.93983 0.96055 1.21174 1.11801 1.00541 0.93087 1.19153 0.91605 0.91853 0.86244 1.83994 1.74302 1.25208 1.24144 1.21342 1.50181 0.79937 0.95341 0.89011 1.25314 0.96660 1.00448 0.94219 1.70064 1.44102 1.35784 0.99509 0.85702 0.78582 0.80571 0.78478 1.19902 1.20306 1.19212 1.20188 1.10431 0.93007 0.97214 0.91669 0.91938 0.92597 0.89397 0.91976 0.90947 0.92140 0.76799 0.88849 0.88803 0.90049 0.90159 0.88787 0.88813 0.76071 0.87459 0.87112 0.85494 0.92038 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.13 0.95 3.18 -67.93 -0.22 0.73 16 3 C -0.16 -0.69 9.38 37.16 0.35 -0.34 16 4 N -0.73 -4.98 5.08 -53.80 -0.27 -5.26 16 5 C 0.51 5.15 7.79 -10.98 -0.09 5.06 16 6 O -0.53 -8.14 15.64 5.55 0.09 -8.05 16 7 C -0.14 -0.99 5.70 -27.88 -0.16 -1.15 16 8 C -0.09 -1.03 3.79 -26.73 -0.10 -1.14 16 9 C -0.14 -1.25 5.70 -27.89 -0.16 -1.41 16 10 C 0.50 7.62 7.67 -10.99 -0.08 7.54 16 11 O -0.50 -10.63 13.42 5.55 0.07 -10.56 16 12 N -0.67 -9.64 5.34 -9.88 -0.05 -9.70 16 13 C 0.17 3.32 6.30 -83.72 -0.53 2.80 16 14 C -0.24 -4.14 9.96 -39.34 -0.39 -4.53 16 15 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 16 C -0.25 -5.58 9.17 -39.36 -0.36 -5.94 16 17 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 18 O -0.17 -5.28 9.76 0.05 0.00 -5.28 16 19 C -0.39 -11.44 9.49 30.89 0.29 -11.14 16 20 H 0.09 2.46 5.20 -52.48 -0.27 2.18 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -26.42 13.67 55.48 0.76 -25.66 16 23 Si 0.94 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 27 C -0.19 -4.46 8.64 -39.21 -0.34 -4.80 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.40 1.42 8.60 -40.82 -0.35 1.07 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 40 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.40 3.90 8.82 -40.82 -0.36 3.54 16 43 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.13 2.85 5.63 -52.48 -0.30 2.55 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.13 3.43 6.23 -52.48 -0.33 3.10 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -39.13 396.23 -7.69 -46.81 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.04 Total: 7.05 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.18 Total: -11.58 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.43 Total: -40.61 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.16 Total: -23.89 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.13 -7.69 -46.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729261014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.196 kcal (2) G-P(sol) polarization free energy of solvation -39.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds