Wall clock time and date at job start Tue Mar 31 2020 18:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 N 1.46496 * 109.47192 * 119.99719 * 2 1 3 5 5 C 1.34775 * 119.99852 * 85.00236 * 4 2 1 6 6 O 1.21286 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00310 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47182 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47107 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47382 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99841 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99999 * 179.97438 * 10 9 8 13 13 C 1.39919 * 119.99780 * 175.48810 * 12 10 9 14 14 C 1.38969 * 120.03650 * 214.84873 * 13 12 10 15 15 C 1.38158 * 120.06368 * 179.72056 * 14 13 12 16 16 C 1.38167 * 120.13972 * 0.56070 * 15 14 13 17 17 C 1.38905 * 120.07508 * 359.71704 * 16 15 14 18 18 O 1.35747 * 120.03882 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99920 * 5.36534 * 18 17 16 20 20 H 1.08010 * 119.99664 * 354.96828 * 19 18 17 21 21 C 1.38652 * 120.00394 * 174.96131 * 19 18 17 22 22 N 1.31565 * 119.99610 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00394 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46998 * 90.00184 * 23 21 19 25 25 H 1.48494 * 109.47114 * 210.00336 * 23 21 19 26 26 H 1.48502 * 109.46993 * 330.00200 * 23 21 19 27 27 C 1.38712 * 120.03870 * 35.12981 * 13 12 10 28 28 H 1.08994 * 109.46854 * 60.00047 * 1 2 3 29 29 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46923 * 299.99625 * 1 2 3 31 31 H 1.08994 * 109.47174 * 239.99923 * 2 1 3 32 32 H 1.08994 * 109.47524 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47097 * 300.00504 * 3 2 1 34 34 H 1.09004 * 109.46849 * 59.99490 * 3 2 1 35 35 H 0.97003 * 120.00730 * 265.00385 * 4 2 1 36 36 H 1.09004 * 109.46800 * 59.99859 * 7 5 4 37 37 H 1.08997 * 109.46926 * 300.00220 * 7 5 4 38 38 H 1.08996 * 109.47186 * 60.00129 * 8 7 5 39 39 H 1.09006 * 109.46876 * 299.99433 * 8 7 5 40 40 H 1.09010 * 109.46995 * 299.99873 * 9 8 7 41 41 H 1.09002 * 109.47702 * 59.99069 * 9 8 7 42 42 H 0.96997 * 120.00090 * 355.49854 * 12 10 9 43 43 H 1.07996 * 119.96735 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.92824 * 180.25956 * 15 14 13 45 45 H 1.08009 * 119.96432 * 179.74527 * 16 15 14 46 46 H 0.96999 * 119.99613 * 179.97438 * 22 21 19 47 47 H 1.08009 * 120.06693 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8592 -2.6677 0.2023 7 6 2.6501 -2.7425 2.4247 8 6 2.7020 -4.2483 2.1587 9 6 3.2120 -4.9696 3.4079 10 6 3.2626 -6.4528 3.1461 11 8 2.9237 -6.8900 2.0668 12 7 3.6845 -7.2934 4.1114 13 6 3.6425 -8.6763 3.9023 14 6 3.3597 -9.5316 4.9605 15 6 3.3124 -10.8967 4.7534 16 6 3.5573 -11.4167 3.4969 17 6 3.8462 -10.5675 2.4363 18 8 4.0872 -11.0792 1.2023 19 6 3.9219 -12.4084 1.0478 20 1 3.6903 -13.0267 1.9026 21 6 4.0490 -12.9815 -0.2083 22 7 4.3314 -12.2284 -1.2494 23 14 3.8192 -14.8229 -0.4225 24 1 2.3911 -15.1136 -0.7075 25 1 4.6564 -15.2980 -1.5531 26 1 4.2274 -15.5208 0.8232 27 6 3.8888 -9.1954 2.6398 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 2.2491 -0.1823 1.9895 36 1 1.9778 -2.5436 3.2594 37 1 3.6493 -2.3824 2.6692 38 1 3.3745 -4.4469 1.3241 39 1 1.7028 -4.6087 1.9140 40 1 4.2111 -4.6092 3.6531 41 1 2.5393 -4.7709 4.2423 42 1 4.0171 -6.9398 4.9512 43 1 3.1727 -9.1285 5.9448 44 1 3.0883 -11.5591 5.5764 45 1 3.5237 -12.4847 3.3391 46 1 4.4207 -12.6294 -2.1281 47 1 4.1129 -8.5330 1.8166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729261014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:59 Heat of formation + Delta-G solvation = -120.071679 kcal Electronic energy + Delta-G solvation = -27213.789019 eV Core-core repulsion = 23167.554497 eV Total energy + Delta-G solvation = -4046.234522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57153 -40.85735 -40.30773 -38.26635 -37.08013 -35.52224 -35.25955 -34.27329 -32.63045 -31.29884 -30.42649 -28.89303 -28.11872 -27.33566 -24.79375 -23.52506 -22.91985 -21.97275 -21.35984 -21.19728 -19.95757 -19.16967 -18.33674 -17.75085 -17.21740 -17.10938 -16.98088 -16.74861 -16.38889 -15.97890 -15.88567 -15.55726 -15.30646 -15.18622 -14.74162 -14.58712 -14.36323 -14.21381 -13.86998 -13.61351 -13.41583 -13.21960 -13.08765 -13.00125 -12.80921 -12.79199 -12.65305 -12.44760 -12.35822 -12.31143 -12.12328 -11.93271 -11.72559 -11.43721 -11.24843 -10.90476 -10.77470 -10.67067 -10.10192 -9.34184 -8.86859 -8.47842 -6.18042 0.43605 0.70319 1.32338 1.43406 1.52015 1.67676 1.69686 2.02293 2.18058 2.34125 2.82410 3.16856 3.45104 3.69037 3.84010 3.96460 4.04235 4.07071 4.14191 4.14975 4.30778 4.36113 4.42958 4.59694 4.63389 4.67276 4.70441 4.72745 4.75057 4.75663 4.80711 4.91903 5.04360 5.08031 5.12623 5.16085 5.24550 5.30348 5.38907 5.43986 5.49981 5.59647 5.63439 5.74191 6.02116 6.22525 6.54939 6.63296 6.95371 7.29036 7.35995 7.79153 8.76265 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.001952 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.022404 B =14343.754789 C =15981.692166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 C -0.149 4.149 4 N -0.714 5.714 5 C 0.499 3.501 6 O -0.598 6.598 7 C -0.124 4.124 8 C -0.093 4.093 9 C -0.117 4.117 10 C 0.491 3.509 11 O -0.576 6.576 12 N -0.654 5.654 13 C 0.182 3.818 14 C -0.202 4.202 15 C -0.050 4.050 16 C -0.257 4.257 17 C 0.123 3.877 18 O -0.238 6.238 19 C -0.414 4.414 20 H 0.107 0.893 21 C -0.031 4.031 22 N -0.926 5.926 23 Si 1.026 2.974 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.246 1.246 27 C -0.218 4.218 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.419 0.581 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.434 0.566 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.123 0.877 46 H 0.272 0.728 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 27.432 18.531 33.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 C -0.207 4.207 4 N -0.368 5.368 5 C 0.287 3.713 6 O -0.478 6.478 7 C -0.164 4.164 8 C -0.132 4.132 9 C -0.156 4.156 10 C 0.281 3.719 11 O -0.453 6.453 12 N -0.302 5.302 13 C 0.087 3.913 14 C -0.223 4.223 15 C -0.068 4.068 16 C -0.277 4.277 17 C 0.072 3.928 18 O -0.145 6.145 19 C -0.490 4.490 20 H 0.125 0.875 21 C -0.228 4.228 22 N -0.565 5.565 23 Si 0.845 3.155 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.169 1.169 27 C -0.240 4.240 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.257 0.743 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.275 0.725 43 H 0.186 0.814 44 H 0.179 0.821 45 H 0.140 0.860 46 H 0.081 0.919 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.627 26.885 16.657 31.834 hybrid contribution 0.136 -0.790 -0.747 1.096 sum -3.491 26.095 15.910 30.762 Atomic orbital electron populations 1.22144 0.95234 1.00978 1.03418 1.20980 0.94331 0.94307 0.88144 1.22000 1.01764 0.92725 1.04213 1.46039 1.66992 1.06345 1.17382 1.21518 0.76588 0.82897 0.90284 1.90760 1.52029 1.67293 1.37751 1.21678 1.05985 0.93079 0.95620 1.21000 1.00979 0.94410 0.96838 1.21724 1.07304 0.85986 1.00586 1.22104 0.75241 0.91405 0.83122 1.90839 1.48487 1.79501 1.26510 1.43373 1.63691 1.02765 1.20349 1.17405 0.97176 0.84201 0.92550 1.20933 1.09702 0.92595 0.99050 1.21068 0.94872 0.95524 0.95333 1.21326 1.12242 1.00032 0.94062 1.19735 0.93631 0.93278 0.86192 1.83961 1.77598 1.25996 1.26966 1.21934 1.50432 0.80222 0.96397 0.87532 1.26790 0.95976 1.06600 0.93395 1.70245 1.47299 1.38652 1.00285 0.84492 0.78864 0.72920 0.79258 1.18927 1.19589 1.16917 1.20224 1.12897 0.92040 0.98789 0.90742 0.95311 0.90603 0.92851 0.91756 0.90372 0.90046 0.74323 0.84732 0.84934 0.94493 0.94163 0.84356 0.83946 0.72545 0.81410 0.82131 0.85971 0.91924 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 2 C 0.13 1.80 3.18 45.00 0.14 1.94 16 3 C -0.15 -1.00 9.38 71.98 0.68 -0.32 16 4 N -0.71 -8.76 5.08 -442.52 -2.25 -11.01 16 5 C 0.50 10.08 7.79 87.66 0.68 10.77 16 6 O -0.60 -20.30 15.64 -3.05 -0.05 -20.35 16 7 C -0.12 -1.42 5.70 29.85 0.17 -1.25 16 8 C -0.09 -2.09 3.79 30.59 0.12 -1.97 16 9 C -0.12 -1.73 5.70 29.85 0.17 -1.56 16 10 C 0.49 14.58 7.67 87.66 0.67 15.26 16 11 O -0.58 -26.20 13.42 -3.05 -0.04 -26.24 16 12 N -0.65 -16.81 5.34 -303.56 -1.62 -18.43 16 13 C 0.18 6.65 6.30 38.14 0.24 6.89 16 14 C -0.20 -6.03 9.96 22.43 0.22 -5.81 16 15 C -0.05 -1.66 10.03 22.23 0.22 -1.44 16 16 C -0.26 -11.71 9.17 22.41 0.21 -11.50 16 17 C 0.12 6.80 6.64 22.56 0.15 6.95 16 18 O -0.24 -15.92 9.76 -22.72 -0.22 -16.15 16 19 C -0.41 -25.87 9.49 67.92 0.64 -25.23 16 20 H 0.11 5.99 5.20 -2.91 -0.02 5.98 16 21 C -0.03 -1.89 5.49 84.83 0.47 -1.43 16 22 N -0.93 -61.54 13.67 21.61 0.30 -61.25 16 23 Si 1.03 45.48 29.55 68.60 2.03 47.51 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 27 C -0.22 -11.03 8.64 22.51 0.19 -10.84 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 1.13 7.58 -2.39 -0.02 1.11 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.42 1.56 8.60 -92.71 -0.80 0.76 16 36 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.04 1.13 8.06 -2.39 -0.02 1.11 16 39 H 0.04 1.20 8.06 -2.38 -0.02 1.18 16 40 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.43 5.88 8.82 -92.71 -0.82 5.06 16 43 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 44 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 45 H 0.12 5.57 5.63 -2.91 -0.02 5.56 16 46 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 47 H 0.10 5.51 6.23 -2.91 -0.02 5.49 16 Total: -1.00 -105.64 396.23 3.19 -102.45 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.61 Total: 24.57 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.66 Total: -21.12 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -3.57 Total: -90.68 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -0.31 Total: -62.74 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -105.64 3.19 -102.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729261014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.623 kcal (2) G-P(sol) polarization free energy of solvation -105.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds