Wall clock time and date at job start Tue Mar 31 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47484 * 2 1 4 4 N 1.46494 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.46500 * 120.00020 * 90.00257 * 4 3 2 6 6 C 1.53006 * 109.46998 * 89.99804 * 5 4 3 7 7 C 1.39008 * 119.99895 * 269.99844 * 4 3 2 8 8 C 1.39240 * 119.92515 * 359.72815 * 7 4 3 9 9 C 1.37109 * 120.07060 * 179.76065 * 8 7 4 10 10 C 1.39857 * 119.92825 * 0.51262 * 9 8 7 11 11 C 1.47380 * 120.07518 * 179.71992 * 10 9 8 12 12 O 1.21521 * 119.99672 * 180.02562 * 11 10 9 13 13 O 1.34757 * 120.00205 * 0.02562 * 11 10 9 14 14 C 1.45195 * 117.00170 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47272 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00127 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00368 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00122 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00350 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99860 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00094 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99846 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47492 * 90.00470 * 22 20 18 24 24 H 1.48506 * 109.46911 * 210.00332 * 22 20 18 25 25 H 1.48493 * 109.47394 * 329.99680 * 22 20 18 26 26 C 1.39865 * 119.85163 * 359.74164 * 10 9 8 27 27 C 1.37111 * 119.92087 * 0.02562 * 26 10 9 28 28 H 1.09001 * 109.46857 * 299.99818 * 1 2 3 29 29 H 1.09005 * 109.46927 * 59.99656 * 1 2 3 30 30 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46857 * 240.00182 * 2 1 3 32 32 H 1.08999 * 109.47139 * 119.99975 * 2 1 3 33 33 H 1.09000 * 109.46784 * 59.99691 * 3 2 1 34 34 H 1.09002 * 109.47475 * 300.00602 * 3 2 1 35 35 H 1.09000 * 109.47175 * 329.99936 * 5 4 3 36 36 H 1.09001 * 109.47297 * 209.99443 * 5 4 3 37 37 H 1.09001 * 109.47002 * 179.97438 * 6 5 4 38 38 H 1.08993 * 109.46955 * 300.00226 * 6 5 4 39 39 H 1.09000 * 109.47050 * 60.00054 * 6 5 4 40 40 H 1.07997 * 119.96537 * 359.97438 * 8 7 4 41 41 H 1.08001 * 120.03712 * 180.22919 * 9 8 7 42 42 H 1.09001 * 109.47230 * 299.99885 * 14 13 11 43 43 H 1.08995 * 109.47180 * 59.99917 * 14 13 11 44 44 H 0.97005 * 119.99516 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00109 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.03926 * 179.97438 * 26 10 9 47 47 H 1.08000 * 119.95632 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4918 2.8853 -1.7112 7 6 4.2005 1.4422 1.2030 8 6 3.5033 1.4478 2.4082 9 6 4.1862 1.4427 3.5970 10 6 5.5848 1.4427 3.5983 11 6 6.3222 1.4435 4.8744 12 8 7.5374 1.4439 4.8738 13 8 5.6490 1.4436 6.0417 14 6 6.4402 1.4450 7.2591 15 6 5.5228 1.4443 8.4546 16 8 4.3202 1.4424 8.2962 17 7 6.0384 1.4459 9.6998 18 6 5.2037 1.4448 10.7874 19 1 4.1329 1.4431 10.6464 20 6 5.7353 1.4469 12.0712 21 7 4.9353 1.4463 13.1137 22 14 7.5874 1.4505 12.3151 23 1 8.0756 2.8515 12.3786 24 1 7.9210 0.7521 13.5825 25 1 8.2378 0.7507 11.1784 26 6 6.2821 1.4424 2.3859 27 6 5.5929 1.4427 1.2005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.6476 0.9290 -2.0292 36 1 5.1895 0.9288 -1.1398 37 1 5.0368 2.8854 -2.6551 38 1 3.5394 3.3991 -1.8410 39 1 5.0812 3.3989 -0.9517 40 1 2.4233 1.4527 2.4065 41 1 3.6448 1.4433 4.5315 42 1 7.0698 0.5555 7.2842 43 1 7.0684 2.3354 7.2831 44 1 7.0001 1.4470 9.8265 45 1 5.3064 1.4475 14.0099 46 1 7.3620 1.4429 2.3833 47 1 6.1308 1.4429 0.2640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:58 Heat of formation + Delta-G solvation = -90.283829 kcal Electronic energy + Delta-G solvation = -27648.431709 eV Core-core repulsion = 23603.488885 eV Total energy + Delta-G solvation = -4044.942824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52044 -39.71473 -38.26832 -37.12585 -35.92935 -34.26292 -34.00457 -31.92753 -31.74768 -31.12938 -29.61494 -28.38978 -26.41155 -24.67327 -24.07596 -22.94911 -22.03881 -21.47221 -20.18433 -19.57770 -18.55993 -18.23831 -17.39777 -16.59256 -16.22816 -16.19458 -15.55257 -15.41792 -14.94523 -14.90874 -14.72333 -14.25832 -14.09815 -14.05179 -13.70790 -13.41153 -13.33164 -13.04573 -12.86231 -12.72954 -12.47857 -12.29415 -12.25050 -12.17560 -12.15855 -11.94325 -11.75733 -11.53970 -11.22387 -11.15443 -10.87320 -10.61048 -10.38863 -10.33736 -10.12660 -10.00823 -9.62852 -9.17902 -8.60361 -8.24622 -7.64120 -6.35149 -3.87677 0.85478 1.33905 2.63716 2.70674 2.81103 3.02830 3.07294 3.15556 3.61728 3.81436 4.07831 4.34834 4.39765 4.51663 4.52756 4.69654 4.75918 4.81169 4.85929 4.94080 4.96599 5.03408 5.13533 5.16242 5.23987 5.27895 5.30925 5.36050 5.40074 5.45796 5.51302 5.60816 5.64333 5.68967 5.73910 5.75000 5.84148 5.93631 6.01528 6.15730 6.37919 6.56425 6.67731 6.87862 7.13157 7.49959 7.99545 8.06691 8.52940 8.88259 9.34719 9.71235 10.77228 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002039 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.553077 B =13727.121290 C =14878.565405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.118 3.882 4 N -0.619 5.619 5 C 0.115 3.885 6 C -0.174 4.174 7 C 0.251 3.749 8 C -0.214 4.214 9 C -0.005 4.005 10 C -0.187 4.187 11 C 0.510 3.490 12 O -0.524 6.524 13 O -0.323 6.323 14 C 0.059 3.941 15 C 0.450 3.550 16 O -0.557 6.557 17 N -0.581 5.581 18 C -0.307 4.307 19 H 0.122 0.878 20 C 0.044 3.956 21 N -0.876 5.876 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.268 1.268 26 C -0.004 4.004 27 C -0.216 4.216 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.373 0.627 45 H 0.275 0.725 46 H 0.135 0.865 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -0.281 -31.645 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C -0.005 4.005 4 N -0.327 5.327 5 C -0.008 4.008 6 C -0.232 4.232 7 C 0.146 3.854 8 C -0.236 4.236 9 C -0.024 4.024 10 C -0.190 4.190 11 C 0.356 3.644 12 O -0.415 6.415 13 O -0.238 6.238 14 C -0.019 4.019 15 C 0.235 3.765 16 O -0.439 6.439 17 N -0.221 5.221 18 C -0.435 4.435 19 H 0.140 0.860 20 C -0.160 4.160 21 N -0.516 5.516 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.193 1.193 26 C -0.023 4.023 27 C -0.238 4.238 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.206 0.794 45 H 0.086 0.914 46 H 0.152 0.848 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.961 -0.275 -31.658 31.720 hybrid contribution 1.640 -0.018 0.467 1.705 sum -0.321 -0.293 -31.191 31.194 Atomic orbital electron populations 1.21711 0.95049 1.02173 1.01984 1.21981 0.96167 0.97339 1.02854 1.21587 0.79013 0.96824 1.03079 1.46636 1.04949 1.78063 1.03039 1.21468 0.97374 0.97113 0.84873 1.22234 1.02196 0.97164 1.01614 1.18097 0.91294 0.90092 0.85882 1.20564 1.00115 1.12299 0.90619 1.21261 0.92824 0.89646 0.98718 1.18832 0.93563 1.16485 0.90097 1.21175 0.86023 0.72499 0.84653 1.90796 1.14856 1.47536 1.88345 1.86598 1.39997 1.83478 1.13690 1.22707 0.93471 1.03541 0.82151 1.19226 0.88909 0.85211 0.83186 1.90594 1.14766 1.53446 1.85079 1.42040 1.08167 1.66746 1.05185 1.19421 0.93194 1.48502 0.82362 0.86028 1.25037 0.98491 0.97358 0.95086 1.69615 1.34889 1.48646 0.98434 0.86678 0.84932 0.79080 0.78823 1.19429 1.20001 1.19329 1.20837 1.00234 0.91128 0.90087 1.20436 0.91887 1.13076 0.98422 0.92300 0.92732 0.92351 0.91939 0.91246 0.90135 0.90723 0.90714 0.90323 0.91669 0.92481 0.91992 0.85233 0.83888 0.89482 0.89469 0.79391 0.91450 0.84765 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.14 -0.83 6.26 -26.73 -0.17 -1.00 16 3 C 0.12 0.68 5.15 -4.04 -0.02 0.66 16 4 N -0.62 -4.38 2.59 -171.75 -0.44 -4.82 16 5 C 0.11 0.59 5.86 -4.04 -0.02 0.57 16 6 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 7 C 0.25 2.39 6.55 -83.86 -0.55 1.84 16 8 C -0.21 -2.26 9.16 -39.62 -0.36 -2.62 16 9 C -0.01 -0.07 9.58 -39.39 -0.38 -0.45 16 10 C -0.19 -2.64 5.88 -104.96 -0.62 -3.26 16 11 C 0.51 8.73 7.89 34.45 0.27 9.00 16 12 O -0.52 -9.62 16.13 -19.28 -0.31 -9.94 16 13 O -0.32 -6.17 8.99 -47.33 -0.43 -6.60 16 14 C 0.06 1.12 5.95 36.00 0.21 1.33 16 15 C 0.45 10.67 7.86 -10.99 -0.09 10.59 16 16 O -0.56 -15.50 16.08 -14.12 -0.23 -15.73 16 17 N -0.58 -14.09 5.09 -10.96 -0.06 -14.14 16 18 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 19 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 20 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 21 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 22 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 26 C 0.00 -0.05 9.56 -39.38 -0.38 -0.42 16 27 C -0.22 -2.09 9.16 -39.62 -0.36 -2.45 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.49 6.16 -51.93 -0.32 0.17 16 34 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 36 H 0.08 0.39 6.17 -51.93 -0.32 0.07 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 1.15 6.10 -52.49 -0.32 0.83 16 41 H 0.14 1.97 7.60 -52.49 -0.40 1.57 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 1.51 7.64 -52.49 -0.40 1.11 16 47 H 0.13 0.96 6.11 -52.49 -0.32 0.63 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -34.13 394.78 -8.35 -42.48 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.94 Total: 7.61 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.96 Total: 5.20 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.27 Total: -43.63 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.96 Total: -32.26 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.13 -8.35 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.800 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds