Wall clock time and date at job start Tue Mar 31 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47484 * 2 1 4 4 N 1.46494 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.46500 * 120.00020 * 90.00257 * 4 3 2 6 6 C 1.53006 * 109.46998 * 89.99804 * 5 4 3 7 7 C 1.39008 * 119.99895 * 269.99844 * 4 3 2 8 8 C 1.39240 * 119.92515 * 359.72815 * 7 4 3 9 9 C 1.37109 * 120.07060 * 179.76065 * 8 7 4 10 10 C 1.39857 * 119.92825 * 0.51262 * 9 8 7 11 11 C 1.47380 * 120.07518 * 179.71992 * 10 9 8 12 12 O 1.21521 * 119.99672 * 180.02562 * 11 10 9 13 13 O 1.34757 * 120.00205 * 0.02562 * 11 10 9 14 14 C 1.45195 * 117.00170 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47272 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00127 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00368 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00122 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00350 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99860 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00094 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99846 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47492 * 90.00470 * 22 20 18 24 24 H 1.48506 * 109.46911 * 210.00332 * 22 20 18 25 25 H 1.48493 * 109.47394 * 329.99680 * 22 20 18 26 26 C 1.39865 * 119.85163 * 359.74164 * 10 9 8 27 27 C 1.37111 * 119.92087 * 0.02562 * 26 10 9 28 28 H 1.09001 * 109.46857 * 299.99818 * 1 2 3 29 29 H 1.09005 * 109.46927 * 59.99656 * 1 2 3 30 30 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46857 * 240.00182 * 2 1 3 32 32 H 1.08999 * 109.47139 * 119.99975 * 2 1 3 33 33 H 1.09000 * 109.46784 * 59.99691 * 3 2 1 34 34 H 1.09002 * 109.47475 * 300.00602 * 3 2 1 35 35 H 1.09000 * 109.47175 * 329.99936 * 5 4 3 36 36 H 1.09001 * 109.47297 * 209.99443 * 5 4 3 37 37 H 1.09001 * 109.47002 * 179.97438 * 6 5 4 38 38 H 1.08993 * 109.46955 * 300.00226 * 6 5 4 39 39 H 1.09000 * 109.47050 * 60.00054 * 6 5 4 40 40 H 1.07997 * 119.96537 * 359.97438 * 8 7 4 41 41 H 1.08001 * 120.03712 * 180.22919 * 9 8 7 42 42 H 1.09001 * 109.47230 * 299.99885 * 14 13 11 43 43 H 1.08995 * 109.47180 * 59.99917 * 14 13 11 44 44 H 0.97005 * 119.99516 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00109 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.03926 * 179.97438 * 26 10 9 47 47 H 1.08000 * 119.95632 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4918 2.8853 -1.7112 7 6 4.2005 1.4422 1.2030 8 6 3.5033 1.4478 2.4082 9 6 4.1862 1.4427 3.5970 10 6 5.5848 1.4427 3.5983 11 6 6.3222 1.4435 4.8744 12 8 7.5374 1.4439 4.8738 13 8 5.6490 1.4436 6.0417 14 6 6.4402 1.4450 7.2591 15 6 5.5228 1.4443 8.4546 16 8 4.3202 1.4424 8.2962 17 7 6.0384 1.4459 9.6998 18 6 5.2037 1.4448 10.7874 19 1 4.1329 1.4431 10.6464 20 6 5.7353 1.4469 12.0712 21 7 4.9353 1.4463 13.1137 22 14 7.5874 1.4505 12.3151 23 1 8.0756 2.8515 12.3786 24 1 7.9210 0.7521 13.5825 25 1 8.2378 0.7507 11.1784 26 6 6.2821 1.4424 2.3859 27 6 5.5929 1.4427 1.2005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.6476 0.9290 -2.0292 36 1 5.1895 0.9288 -1.1398 37 1 5.0368 2.8854 -2.6551 38 1 3.5394 3.3991 -1.8410 39 1 5.0812 3.3989 -0.9517 40 1 2.4233 1.4527 2.4065 41 1 3.6448 1.4433 4.5315 42 1 7.0698 0.5555 7.2842 43 1 7.0684 2.3354 7.2831 44 1 7.0001 1.4470 9.8265 45 1 5.3064 1.4475 14.0099 46 1 7.3620 1.4429 2.3833 47 1 6.1308 1.4429 0.2640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:57 Heat of formation + Delta-G solvation = -110.229541 kcal Electronic energy + Delta-G solvation = -27649.296620 eV Core-core repulsion = 23603.488885 eV Total energy + Delta-G solvation = -4045.807735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69776 -40.73678 -40.07927 -37.96347 -37.29836 -36.08321 -34.74900 -33.87005 -32.61226 -31.99380 -30.54570 -29.75199 -27.14240 -26.36735 -24.97989 -23.76111 -22.73822 -22.32524 -21.54605 -21.03200 -20.51784 -19.29701 -18.39598 -17.88823 -17.66382 -17.33689 -16.93423 -16.71776 -16.07274 -15.80606 -15.59374 -15.50102 -15.28325 -14.94964 -14.80489 -14.63360 -14.27661 -14.14651 -14.11529 -13.94426 -13.72404 -13.41161 -13.31803 -13.00943 -12.97864 -12.74100 -12.62651 -12.46484 -12.22776 -12.04221 -12.00584 -11.84218 -11.66571 -11.63025 -11.59255 -11.51602 -10.88666 -10.60901 -10.34522 -10.05928 -8.46432 -8.36320 -6.09401 -0.14645 0.47610 1.29588 1.33221 1.40193 1.47607 1.55734 1.75304 2.05109 2.19923 2.84442 2.87040 3.07789 3.72561 3.74991 3.85754 3.94108 4.01944 4.07466 4.10636 4.14459 4.16932 4.35793 4.37911 4.38824 4.42980 4.50539 4.60635 4.67493 4.73107 4.91236 4.94529 4.95672 5.07649 5.14591 5.19307 5.21146 5.25564 5.36689 5.39393 5.44451 5.48494 5.49087 5.70904 5.84637 6.26574 6.41337 6.46771 6.69853 6.77671 7.25039 7.76807 8.70145 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002039 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.553077 B =13727.121290 C =14878.565405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.113 3.887 4 N -0.611 5.611 5 C 0.108 3.892 6 C -0.169 4.169 7 C 0.260 3.740 8 C -0.217 4.217 9 C -0.015 4.015 10 C -0.217 4.217 11 C 0.510 3.490 12 O -0.541 6.541 13 O -0.344 6.344 14 C 0.068 3.932 15 C 0.450 3.550 16 O -0.607 6.607 17 N -0.576 5.576 18 C -0.333 4.333 19 H 0.061 0.939 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.961 3.039 23 H -0.254 1.254 24 H -0.270 1.270 25 H -0.233 1.233 26 C -0.002 4.002 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.393 0.607 45 H 0.282 0.718 46 H 0.139 0.861 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -0.275 -34.849 34.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.009 4.009 4 N -0.316 5.316 5 C -0.014 4.014 6 C -0.228 4.228 7 C 0.153 3.847 8 C -0.239 4.239 9 C -0.035 4.035 10 C -0.221 4.221 11 C 0.359 3.641 12 O -0.434 6.434 13 O -0.259 6.259 14 C -0.009 4.009 15 C 0.237 3.763 16 O -0.492 6.492 17 N -0.218 5.218 18 C -0.462 4.462 19 H 0.079 0.921 20 C -0.208 4.208 21 N -0.564 5.564 22 Si 0.781 3.219 23 H -0.179 1.179 24 H -0.195 1.195 25 H -0.156 1.156 26 C -0.021 4.021 27 C -0.232 4.232 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.160 0.840 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.229 0.771 45 H 0.092 0.908 46 H 0.157 0.843 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.318 -0.270 -34.917 34.919 hybrid contribution 0.703 -0.018 1.267 1.449 sum 1.021 -0.289 -33.649 33.666 Atomic orbital electron populations 1.21699 0.94463 1.02213 1.02419 1.21906 0.96636 0.97016 1.02171 1.21738 0.78182 0.97048 1.03943 1.46916 1.05671 1.76105 1.02948 1.21711 0.97859 0.97696 0.84119 1.22190 1.02116 0.96531 1.01919 1.18200 0.91545 0.88487 0.86479 1.20662 1.00794 1.12112 0.90337 1.21142 0.92626 0.90762 0.98948 1.18824 0.93885 1.19895 0.89462 1.21658 0.86067 0.71813 0.84605 1.90763 1.15351 1.48891 1.88392 1.86605 1.40919 1.84062 1.14358 1.22579 0.92055 1.06099 0.80212 1.20143 0.88977 0.82889 0.84315 1.90570 1.17466 1.55109 1.86035 1.41810 1.08673 1.66871 1.04428 1.19005 0.91416 1.51107 0.84625 0.92085 1.26093 1.05388 0.95593 0.93740 1.69780 1.38219 1.49071 0.99355 0.85416 0.76334 0.80203 0.79979 1.17877 1.19521 1.15627 1.20933 1.00513 0.90847 0.89856 1.20676 0.91969 1.11882 0.98698 0.92694 0.91484 0.92551 0.91361 0.93140 0.90556 0.88632 0.88753 0.89718 0.90079 0.92585 0.93435 0.83954 0.85830 0.86819 0.86710 0.77100 0.90796 0.84318 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.54 16 2 C -0.14 -1.34 6.26 30.59 0.19 -1.15 16 3 C 0.11 1.04 5.15 86.38 0.44 1.48 16 4 N -0.61 -7.00 2.59 -697.31 -1.80 -8.80 16 5 C 0.11 0.73 5.86 86.38 0.51 1.24 16 6 C -0.17 -1.12 10.24 71.98 0.74 -0.38 16 7 C 0.26 4.49 6.55 38.49 0.25 4.74 16 8 C -0.22 -4.51 9.16 22.25 0.20 -4.30 16 9 C -0.02 -0.42 9.58 22.40 0.21 -0.20 16 10 C -0.22 -6.23 5.88 -20.08 -0.12 -6.35 16 11 C 0.51 17.62 7.89 70.23 0.55 18.18 16 12 O -0.54 -19.57 16.13 19.77 0.32 -19.25 16 13 O -0.34 -13.42 8.99 -50.29 -0.45 -13.87 16 14 C 0.07 2.51 5.95 71.23 0.42 2.94 16 15 C 0.45 21.83 7.86 87.66 0.69 22.52 16 16 O -0.61 -35.67 16.08 15.71 0.25 -35.41 16 17 N -0.58 -28.09 5.09 -306.98 -1.56 -29.66 16 18 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 19 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 20 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 21 N -0.92 -55.36 13.96 21.66 0.30 -55.06 16 22 Si 0.96 38.86 27.74 68.60 1.90 40.76 16 23 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 26 C 0.00 -0.05 9.56 22.40 0.21 0.16 16 27 C -0.21 -3.62 9.16 22.25 0.20 -3.42 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.80 6.16 -2.39 -0.01 0.79 16 34 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 35 H 0.09 0.35 8.07 -2.39 -0.02 0.33 16 36 H 0.08 0.52 6.17 -2.39 -0.01 0.50 16 37 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.14 2.49 6.10 -2.91 -0.02 2.47 16 41 H 0.12 3.72 7.60 -2.91 -0.02 3.70 16 42 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 43 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.39 15.84 5.76 -92.70 -0.53 15.31 16 45 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.14 2.97 7.64 -2.91 -0.02 2.95 16 47 H 0.16 1.79 6.11 -2.91 -0.02 1.77 16 Total: -1.00 -79.46 394.78 5.90 -73.56 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.39 Total: 31.63 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.55 Total: 16.10 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -3.07 Total: -93.52 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: 0.12 Total: -68.54 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.90 Total: 40.76 kcal Total: -79.46 5.90 -73.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.671 kcal (2) G-P(sol) polarization free energy of solvation -79.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds