Wall clock time and date at job start Tue Mar 31 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 N 1.46894 * 109.47011 * 183.87490 * 3 2 1 5 5 C 1.46907 * 110.99815 * 160.03381 * 4 3 2 6 6 C 1.50694 * 109.47082 * 288.18664 * 5 4 3 7 7 O 1.20829 * 120.00540 * 357.91128 * 6 5 4 8 8 O 1.34235 * 120.00112 * 177.90937 * 6 5 4 9 9 C 1.46904 * 111.00368 * 283.98843 * 4 3 2 10 10 C 1.50695 * 109.47308 * 170.00500 * 9 4 3 11 11 O 1.21293 * 119.99956 * 359.97438 * 10 9 4 12 12 N 1.34778 * 119.99943 * 180.02562 * 10 9 4 13 13 C 1.46502 * 119.99758 * 4.46707 * 12 10 9 14 14 C 1.50692 * 109.46944 * 269.99598 * 13 12 10 15 15 H 1.08005 * 119.99912 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99806 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00024 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47277 * 60.00155 * 18 16 14 20 20 H 1.48503 * 109.47086 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47066 * 300.00032 * 18 16 14 22 22 C 1.39923 * 119.99628 * 184.46440 * 12 10 9 23 23 C 1.38869 * 120.07196 * 67.91585 * 22 12 10 24 24 C 1.38110 * 119.92981 * 179.97438 * 23 22 12 25 25 C 1.38283 * 120.07275 * 359.97438 * 24 23 22 26 26 C 1.38284 * 120.14175 * 0.03997 * 25 24 23 27 27 C 1.38118 * 120.06677 * 359.95843 * 26 25 24 28 28 H 1.09005 * 109.46389 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46700 * 299.99581 * 1 2 3 30 30 H 1.08997 * 109.47035 * 60.00409 * 1 2 3 31 31 H 1.09002 * 109.47145 * 239.99988 * 2 1 3 32 32 H 1.08996 * 109.47757 * 120.00178 * 2 1 3 33 33 H 1.08999 * 109.46968 * 63.87414 * 3 2 1 34 34 H 1.08996 * 109.46997 * 303.87887 * 3 2 1 35 35 H 1.09000 * 109.47022 * 48.18720 * 5 4 3 36 36 H 1.08997 * 109.47113 * 168.18079 * 5 4 3 37 37 H 0.96688 * 117.00549 * 179.97438 * 8 6 5 38 38 H 1.08994 * 109.46704 * 49.99713 * 9 4 3 39 39 H 1.09003 * 109.46440 * 290.00434 * 9 4 3 40 40 H 1.08992 * 109.47072 * 30.00108 * 13 12 10 41 41 H 1.09009 * 109.46548 * 150.00001 * 13 12 10 42 42 H 0.97005 * 120.00079 * 179.97438 * 17 16 14 43 43 H 1.08005 * 120.03543 * 359.69342 * 23 22 12 44 44 H 1.08006 * 119.96507 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.93027 * 180.02562 * 25 24 23 46 46 H 1.07991 * 119.97071 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.03216 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5060 1.4436 -0.0936 5 6 4.0025 2.7433 -0.5654 6 6 3.6745 2.9057 -2.0272 7 8 3.1211 2.0134 -2.6251 8 8 3.9972 4.0417 -2.6653 9 6 4.1160 1.0826 1.1931 10 6 5.5933 0.8543 1.0022 11 8 6.0892 0.9796 -0.0976 12 7 6.3633 0.5100 2.0534 13 6 5.7500 0.2620 3.3606 14 6 5.6972 1.5489 4.1429 15 1 6.0817 2.4605 3.7095 16 6 5.1582 1.5627 5.4118 17 7 4.6905 0.4527 5.9396 18 14 5.0920 3.1581 6.3813 19 1 4.2830 4.1565 5.6370 20 1 4.4716 2.9065 7.7068 21 1 6.4695 3.6795 6.5709 22 6 7.7484 0.3893 1.8962 23 6 8.5208 1.5154 1.6436 24 6 9.8878 1.3930 1.4894 25 6 10.4876 0.1509 1.5868 26 6 9.7214 -0.9725 1.8380 27 6 8.3538 -0.8568 1.9932 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 1.7345 1.9359 0.9227 34 1 1.6210 1.9760 -0.8532 35 1 3.5278 3.5421 0.0044 36 1 5.0826 2.7913 -0.4277 37 1 3.7671 4.0994 -3.6026 38 1 3.6533 0.1711 1.5714 39 1 3.9626 1.8914 1.9075 40 1 4.7389 -0.1201 3.2209 41 1 6.3433 -0.4713 3.9070 42 1 4.3116 0.4622 6.8325 43 1 8.0524 2.4853 1.5633 44 1 10.4890 2.2684 1.2925 45 1 11.5568 0.0579 1.4663 46 1 10.1926 -1.9412 1.9131 47 1 7.7558 -1.7346 2.1889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737013250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:39 Heat of formation + Delta-G solvation = -87.852184 kcal Electronic energy + Delta-G solvation = -29690.184682 eV Core-core repulsion = 25645.347302 eV Total energy + Delta-G solvation = -4044.837380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33922 -39.79130 -38.27571 -36.93811 -35.76415 -35.06370 -33.12971 -32.70348 -30.52835 -30.14114 -28.65675 -27.33379 -26.92783 -24.04042 -23.22034 -22.21564 -21.92841 -21.29887 -20.50888 -18.84549 -17.91969 -17.09170 -16.78136 -16.56866 -16.27599 -15.82660 -15.68147 -15.08214 -14.82236 -14.58391 -14.46847 -14.22183 -14.09741 -13.68884 -13.31154 -13.02781 -12.91037 -12.73473 -12.55323 -12.25042 -12.11649 -11.98685 -11.72725 -11.58057 -11.46827 -11.34380 -11.18537 -11.06817 -10.91531 -10.85295 -10.80018 -10.46667 -10.29355 -10.23676 -9.92300 -9.21514 -8.66862 -8.61311 -8.52379 -8.19069 -7.70463 -6.28175 -4.36360 1.73622 1.81592 2.41009 2.96906 3.16940 3.19382 3.23209 3.27133 3.59104 4.14699 4.22243 4.27061 5.01506 5.05312 5.12443 5.24725 5.27444 5.29647 5.32913 5.38405 5.45438 5.47308 5.58710 5.64223 5.72526 5.80156 5.81924 5.93038 5.93946 5.95717 6.03957 6.13706 6.31638 6.39385 6.45821 6.60029 6.62461 6.80075 6.85744 6.87665 6.99077 7.09390 7.11983 7.21354 7.59905 7.68574 7.91860 8.07795 8.11380 8.66452 8.87957 9.31620 10.78544 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.004786 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.982131 B = 5848.923257 C = 7774.610335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.057 3.943 4 N -0.511 5.511 5 C 0.061 3.939 6 C 0.483 3.517 7 O -0.498 6.498 8 O -0.523 6.523 9 C 0.045 3.955 10 C 0.522 3.478 11 O -0.543 6.543 12 N -0.562 5.562 13 C 0.239 3.761 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.178 3.822 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.136 4.136 26 C -0.114 4.114 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.406 0.594 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.267 0.733 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 2.275 -9.358 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.070 4.070 4 N -0.237 5.237 5 C -0.068 4.068 6 C 0.324 3.676 7 O -0.384 6.384 8 O -0.335 6.335 9 C -0.085 4.085 10 C 0.311 3.689 11 O -0.421 6.421 12 N -0.291 5.291 13 C 0.120 3.880 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.086 3.914 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.154 4.154 26 C -0.132 4.132 27 C -0.143 4.143 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.264 0.736 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.400 1.620 -9.832 9.973 hybrid contribution -0.436 1.448 0.861 1.740 sum -0.836 3.068 -8.971 9.518 Atomic orbital electron populations 1.21717 0.95880 1.01590 1.01459 1.21468 0.94968 0.96182 1.02961 1.22227 0.86047 0.98220 1.00508 1.61205 1.06346 1.27938 1.28186 1.21619 1.04961 0.92007 0.88227 1.23376 0.74766 0.78725 0.90723 1.90688 1.38758 1.40978 1.67994 1.84532 1.77805 1.41090 1.30083 1.22026 0.92427 1.04170 0.89858 1.20411 0.88707 0.76272 0.83559 1.90634 1.75185 1.51758 1.24539 1.45958 1.03802 1.67027 1.12276 1.19575 0.93897 0.97582 0.76912 1.21372 1.41350 0.94839 1.00366 0.92083 1.24911 0.94779 0.96635 0.97216 1.69900 1.39598 1.26494 1.16616 0.86578 0.78589 0.83297 0.79180 1.20083 1.21046 1.20030 1.17550 0.83789 0.92626 0.97397 1.21201 0.93618 0.98016 0.99860 1.20933 0.94283 0.97411 1.00615 1.21011 0.99376 0.92878 1.02140 1.20907 0.93368 0.98438 1.00508 1.21216 0.95095 0.96661 1.01372 0.92641 0.92871 0.92978 0.90850 0.91831 0.94229 0.90787 0.90995 0.85232 0.73615 0.87010 0.89715 0.94032 0.94189 0.92310 0.86403 0.86358 0.86557 0.86274 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.57 5.99 -26.73 -0.16 -1.74 16 3 C 0.06 0.81 4.51 -3.82 -0.02 0.79 16 4 N -0.51 -8.31 3.79 -237.52 -0.90 -9.21 16 5 C 0.06 0.92 5.12 -4.97 -0.03 0.89 16 6 C 0.48 7.16 7.82 36.00 0.28 7.44 16 7 O -0.50 -8.64 15.91 -18.75 -0.30 -8.93 16 8 O -0.52 -6.08 13.42 -39.27 -0.53 -6.60 16 9 C 0.04 0.78 3.93 -4.98 -0.02 0.76 16 10 C 0.52 10.41 7.09 -10.99 -0.08 10.33 16 11 O -0.54 -11.81 14.23 5.55 0.08 -11.73 16 12 N -0.56 -11.58 2.51 -114.74 -0.29 -11.87 16 13 C 0.24 5.40 4.88 -5.20 -0.03 5.38 16 14 C -0.54 -13.30 9.17 -34.44 -0.32 -13.61 16 15 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 16 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.43 13.29 55.43 0.74 -22.70 16 18 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.18 3.52 4.75 -83.69 -0.40 3.12 16 23 C -0.11 -1.98 9.55 -39.39 -0.38 -2.36 16 24 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 25 C -0.14 -1.96 10.04 -39.55 -0.40 -2.35 16 26 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 27 C -0.12 -2.21 9.69 -39.39 -0.38 -2.59 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.87 6.92 -51.93 -0.36 0.51 16 33 H 0.04 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.07 1.04 6.47 -51.93 -0.34 0.70 16 35 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.13 2.18 5.81 -51.93 -0.30 1.88 16 37 H 0.41 2.85 9.10 45.56 0.41 3.26 16 38 H 0.11 1.90 5.83 -51.93 -0.30 1.60 16 39 H 0.09 1.50 7.90 -51.93 -0.41 1.09 16 40 H 0.04 0.94 6.47 -51.93 -0.34 0.61 16 41 H 0.04 0.97 7.86 -51.92 -0.41 0.56 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 43 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 44 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 45 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -30.62 393.39 -8.95 -39.57 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.22 Total: 8.69 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.44 Total: 2.13 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.45 Total: -43.78 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.75 Total: -27.27 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.62 -8.95 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737013250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.282 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds