Wall clock time and date at job start Tue Mar 31 2020 18:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 N 1.46894 * 109.47011 * 183.87490 * 3 2 1 5 5 C 1.46907 * 110.99815 * 160.03381 * 4 3 2 6 6 C 1.50694 * 109.47082 * 288.18664 * 5 4 3 7 7 O 1.20829 * 120.00540 * 357.91128 * 6 5 4 8 8 O 1.34235 * 120.00112 * 177.90937 * 6 5 4 9 9 C 1.46904 * 111.00368 * 283.98843 * 4 3 2 10 10 C 1.50695 * 109.47308 * 170.00500 * 9 4 3 11 11 O 1.21293 * 119.99956 * 359.97438 * 10 9 4 12 12 N 1.34778 * 119.99943 * 180.02562 * 10 9 4 13 13 C 1.46502 * 119.99758 * 4.46707 * 12 10 9 14 14 C 1.50692 * 109.46944 * 269.99598 * 13 12 10 15 15 H 1.08005 * 119.99912 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99806 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00024 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47277 * 60.00155 * 18 16 14 20 20 H 1.48503 * 109.47086 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47066 * 300.00032 * 18 16 14 22 22 C 1.39923 * 119.99628 * 184.46440 * 12 10 9 23 23 C 1.38869 * 120.07196 * 67.91585 * 22 12 10 24 24 C 1.38110 * 119.92981 * 179.97438 * 23 22 12 25 25 C 1.38283 * 120.07275 * 359.97438 * 24 23 22 26 26 C 1.38284 * 120.14175 * 0.03997 * 25 24 23 27 27 C 1.38118 * 120.06677 * 359.95843 * 26 25 24 28 28 H 1.09005 * 109.46389 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46700 * 299.99581 * 1 2 3 30 30 H 1.08997 * 109.47035 * 60.00409 * 1 2 3 31 31 H 1.09002 * 109.47145 * 239.99988 * 2 1 3 32 32 H 1.08996 * 109.47757 * 120.00178 * 2 1 3 33 33 H 1.08999 * 109.46968 * 63.87414 * 3 2 1 34 34 H 1.08996 * 109.46997 * 303.87887 * 3 2 1 35 35 H 1.09000 * 109.47022 * 48.18720 * 5 4 3 36 36 H 1.08997 * 109.47113 * 168.18079 * 5 4 3 37 37 H 0.96688 * 117.00549 * 179.97438 * 8 6 5 38 38 H 1.08994 * 109.46704 * 49.99713 * 9 4 3 39 39 H 1.09003 * 109.46440 * 290.00434 * 9 4 3 40 40 H 1.08992 * 109.47072 * 30.00108 * 13 12 10 41 41 H 1.09009 * 109.46548 * 150.00001 * 13 12 10 42 42 H 0.97005 * 120.00079 * 179.97438 * 17 16 14 43 43 H 1.08005 * 120.03543 * 359.69342 * 23 22 12 44 44 H 1.08006 * 119.96507 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.93027 * 180.02562 * 25 24 23 46 46 H 1.07991 * 119.97071 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.03216 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5060 1.4436 -0.0936 5 6 4.0025 2.7433 -0.5654 6 6 3.6745 2.9057 -2.0272 7 8 3.1211 2.0134 -2.6251 8 8 3.9972 4.0417 -2.6653 9 6 4.1160 1.0826 1.1931 10 6 5.5933 0.8543 1.0022 11 8 6.0892 0.9796 -0.0976 12 7 6.3633 0.5100 2.0534 13 6 5.7500 0.2620 3.3606 14 6 5.6972 1.5489 4.1429 15 1 6.0817 2.4605 3.7095 16 6 5.1582 1.5627 5.4118 17 7 4.6905 0.4527 5.9396 18 14 5.0920 3.1581 6.3813 19 1 4.2830 4.1565 5.6370 20 1 4.4716 2.9065 7.7068 21 1 6.4695 3.6795 6.5709 22 6 7.7484 0.3893 1.8962 23 6 8.5208 1.5154 1.6436 24 6 9.8878 1.3930 1.4894 25 6 10.4876 0.1509 1.5868 26 6 9.7214 -0.9725 1.8380 27 6 8.3538 -0.8568 1.9932 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 1.7345 1.9359 0.9227 34 1 1.6210 1.9760 -0.8532 35 1 3.5278 3.5421 0.0044 36 1 5.0826 2.7913 -0.4277 37 1 3.7671 4.0994 -3.6026 38 1 3.6533 0.1711 1.5714 39 1 3.9626 1.8914 1.9075 40 1 4.7389 -0.1201 3.2209 41 1 6.3433 -0.4713 3.9070 42 1 4.3116 0.4622 6.8325 43 1 8.0524 2.4853 1.5633 44 1 10.4890 2.2684 1.2925 45 1 11.5568 0.0579 1.4663 46 1 10.1926 -1.9412 1.9131 47 1 7.7558 -1.7346 2.1889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737013250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:38 Heat of formation + Delta-G solvation = -105.867272 kcal Electronic energy + Delta-G solvation = -29690.965875 eV Core-core repulsion = 25645.347302 eV Total energy + Delta-G solvation = -4045.618573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68660 -41.10420 -39.58281 -38.19646 -36.90309 -36.70267 -34.60957 -34.18958 -31.80920 -31.53623 -30.01221 -28.95471 -28.25392 -25.25239 -24.99999 -23.52745 -23.25739 -22.38994 -21.70610 -20.28907 -19.08057 -18.70207 -18.46793 -17.88993 -17.69324 -17.05862 -16.96634 -16.61591 -16.27310 -15.96248 -15.73898 -15.53219 -15.37027 -15.03074 -14.58917 -14.34661 -14.28868 -14.10991 -13.84476 -13.68899 -13.51363 -13.32113 -13.14805 -12.98358 -12.88400 -12.63033 -12.52958 -12.48478 -12.34662 -12.16613 -12.05114 -11.97762 -11.72770 -11.59940 -11.40784 -10.80958 -10.57777 -10.10697 -9.81649 -9.45240 -9.21930 -8.21386 -6.36136 0.42124 0.52256 1.23725 1.42001 1.43877 1.50549 1.64917 1.83470 2.16293 2.40762 2.87939 2.96422 3.09518 3.70722 3.90513 4.04643 4.06143 4.12014 4.14946 4.27422 4.28645 4.33190 4.43741 4.46556 4.49920 4.56608 4.63423 4.65072 4.69597 4.74085 4.92306 4.98288 5.11504 5.14930 5.19910 5.28180 5.39928 5.48039 5.56861 5.61019 5.62186 5.68788 5.72686 5.83843 5.94158 6.01719 6.20551 6.46734 6.74996 7.05223 7.25898 7.37614 8.84092 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.004786 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.982131 B = 5848.923257 C = 7774.610335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.060 3.940 4 N -0.525 5.525 5 C 0.057 3.943 6 C 0.491 3.509 7 O -0.527 6.527 8 O -0.514 6.514 9 C 0.057 3.943 10 C 0.519 3.481 11 O -0.563 6.563 12 N -0.562 5.562 13 C 0.255 3.745 14 C -0.544 4.544 15 H 0.054 0.946 16 C 0.027 3.973 17 N -0.917 5.917 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.137 3.863 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.110 4.110 27 C -0.145 4.145 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.428 0.572 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.018 0.982 42 H 0.269 0.731 43 H 0.105 0.895 44 H 0.149 0.851 45 H 0.158 0.842 46 H 0.153 0.847 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 3.233 -9.603 10.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.067 4.067 4 N -0.250 5.250 5 C -0.072 4.072 6 C 0.333 3.667 7 O -0.416 6.416 8 O -0.327 6.327 9 C -0.073 4.073 10 C 0.308 3.692 11 O -0.443 6.443 12 N -0.290 5.290 13 C 0.136 3.864 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.174 4.174 17 N -0.556 5.556 18 Si 0.778 3.222 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.202 1.202 22 C 0.046 3.954 23 C -0.151 4.151 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.128 4.128 27 C -0.164 4.164 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.289 0.711 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.170 0.830 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.483 2.603 -10.105 10.446 hybrid contribution -0.582 1.153 0.859 1.551 sum -0.099 3.756 -9.246 9.981 Atomic orbital electron populations 1.21673 0.93866 1.02426 1.02080 1.21449 0.96705 0.95538 1.01731 1.22274 0.84649 0.98740 1.01057 1.61202 1.07590 1.28939 1.27307 1.21613 1.04025 0.92286 0.89232 1.23190 0.74076 0.78913 0.90491 1.90680 1.40292 1.42111 1.68542 1.84474 1.77099 1.39293 1.31865 1.21863 0.90882 1.03977 0.90562 1.20810 0.89574 0.75681 0.83088 1.90603 1.75810 1.52772 1.25122 1.45878 1.04642 1.67007 1.11512 1.19205 0.93267 0.96293 0.77650 1.21526 1.40904 0.95130 1.00708 0.92766 1.25583 0.94487 0.99299 0.98040 1.69993 1.40435 1.28163 1.16971 0.85682 0.78438 0.80076 0.77975 1.19131 1.20743 1.20154 1.17943 0.83472 0.94056 0.99896 1.21295 0.95178 0.97148 1.01433 1.21328 0.93168 0.99348 0.99265 1.21512 1.01368 0.91806 0.99762 1.21337 0.92175 1.00490 0.98794 1.21395 0.96705 0.95904 1.02438 0.91756 0.92126 0.92412 0.92564 0.92544 0.93199 0.90475 0.88700 0.87066 0.71066 0.86997 0.90160 0.94461 0.96400 0.92232 0.87632 0.83372 0.82391 0.82953 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.91 71.98 0.71 -2.30 16 2 C -0.12 -3.11 5.99 30.60 0.18 -2.93 16 3 C 0.06 1.66 4.51 86.31 0.39 2.05 16 4 N -0.52 -17.31 3.79 -905.38 -3.43 -20.74 16 5 C 0.06 1.73 5.12 85.55 0.44 2.17 16 6 C 0.49 14.27 7.82 71.23 0.56 14.83 16 7 O -0.53 -18.16 15.91 21.95 0.35 -17.81 16 8 O -0.51 -11.15 13.42 -51.46 -0.69 -11.84 16 9 C 0.06 2.05 3.93 85.55 0.34 2.39 16 10 C 0.52 21.55 7.09 87.66 0.62 22.17 16 11 O -0.56 -25.40 14.23 -3.07 -0.04 -25.44 16 12 N -0.56 -24.19 2.51 -635.31 -1.59 -25.78 16 13 C 0.26 12.03 4.88 85.63 0.42 12.45 16 14 C -0.54 -27.32 9.17 25.60 0.23 -27.09 16 15 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 16 C 0.03 1.36 5.46 84.66 0.46 1.83 16 17 N -0.92 -48.93 13.29 21.45 0.28 -48.64 16 18 Si 0.95 40.34 29.54 68.60 2.03 42.37 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 C 0.14 5.58 4.75 38.15 0.18 5.76 16 23 C -0.13 -4.89 9.55 22.39 0.21 -4.68 16 24 C -0.11 -3.30 10.04 22.25 0.22 -3.07 16 25 C -0.13 -3.25 10.04 22.29 0.22 -3.03 16 26 C -0.11 -3.10 10.04 22.25 0.22 -2.87 16 27 C -0.14 -5.22 9.69 22.39 0.22 -5.00 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.57 6.92 -2.39 -0.02 1.55 16 33 H 0.05 1.28 8.00 -2.39 -0.02 1.26 16 34 H 0.08 2.11 6.47 -2.39 -0.02 2.09 16 35 H 0.10 2.39 8.05 -2.39 -0.02 2.37 16 36 H 0.11 3.84 5.81 -2.39 -0.01 3.82 16 37 H 0.43 5.18 9.10 -74.06 -0.67 4.51 16 38 H 0.11 3.97 5.83 -2.39 -0.01 3.96 16 39 H 0.08 2.93 7.90 -2.39 -0.02 2.91 16 40 H 0.04 1.77 6.47 -2.39 -0.02 1.75 16 41 H 0.02 0.91 7.86 -2.38 -0.02 0.90 16 42 H 0.27 13.65 8.31 -92.70 -0.77 12.88 16 43 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 44 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 45 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.15 3.22 8.06 -2.92 -0.02 3.19 16 47 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -66.86 393.39 2.85 -64.01 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.31 Total: 31.21 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.64 Total: 12.66 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.74 Total: -95.16 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.39 Total: -55.09 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -66.86 2.85 -64.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737013250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.856 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds