Wall clock time and date at job start Tue Mar 31 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46956 * 2 1 4 4 N 1.46501 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99902 * 90.00211 * 4 3 2 6 6 C 1.53007 * 109.47062 * 90.00206 * 5 4 3 7 7 C 1.39058 * 120.00135 * 270.00499 * 4 3 2 8 8 C 1.39234 * 119.92526 * 359.72348 * 7 4 3 9 9 C 1.37589 * 120.07177 * 179.76254 * 8 7 4 10 10 C 1.39854 * 119.92673 * 0.53749 * 9 8 7 11 11 C 1.47415 * 120.07575 * 179.70147 * 10 9 8 12 12 O 1.21626 * 120.00454 * 142.46350 * 11 10 9 13 13 N 1.34782 * 119.99729 * 322.45915 * 11 10 9 14 14 C 1.36910 * 119.99810 * 186.36606 * 13 11 10 15 15 H 1.08001 * 119.99892 * 346.25336 * 14 13 11 16 16 C 1.39010 * 119.99545 * 166.26259 * 14 13 11 17 17 N 1.31383 * 120.00572 * 34.55765 * 16 14 13 18 18 Si 1.86807 * 119.99492 * 214.55669 * 16 14 13 19 19 H 1.48503 * 109.47006 * 90.00198 * 18 16 14 20 20 H 1.48501 * 109.46880 * 210.00201 * 18 16 14 21 21 H 1.48497 * 109.47085 * 329.99775 * 18 16 14 22 22 C 1.46501 * 119.99845 * 6.36554 * 13 11 10 23 23 C 1.50702 * 109.47061 * 107.01836 * 22 13 11 24 24 O 1.20828 * 119.99620 * 359.97438 * 23 22 13 25 25 O 1.34224 * 119.99785 * 179.97438 * 23 22 13 26 26 C 1.39857 * 119.85365 * 359.71462 * 10 9 8 27 27 C 1.37595 * 119.92175 * 0.02562 * 26 10 9 28 28 H 1.08997 * 109.47489 * 59.99372 * 1 2 3 29 29 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46587 * 299.99247 * 1 2 3 31 31 H 1.09005 * 109.46587 * 240.00753 * 2 1 3 32 32 H 1.08997 * 109.47489 * 120.00628 * 2 1 3 33 33 H 1.09005 * 109.46858 * 60.00919 * 3 2 1 34 34 H 1.08997 * 109.47535 * 300.00601 * 3 2 1 35 35 H 1.09002 * 109.47350 * 330.00194 * 5 4 3 36 36 H 1.08998 * 109.47542 * 210.00190 * 5 4 3 37 37 H 1.08998 * 109.46928 * 300.00359 * 6 5 4 38 38 H 1.08998 * 109.46591 * 59.99857 * 6 5 4 39 39 H 1.08998 * 109.46784 * 179.97438 * 6 5 4 40 40 H 1.08004 * 119.95962 * 359.97438 * 8 7 4 41 41 H 1.08004 * 120.03804 * 180.25072 * 9 8 7 42 42 H 0.97001 * 120.00129 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46894 * 227.01705 * 22 13 11 44 44 H 1.08994 * 109.47248 * 347.01802 * 22 13 11 45 45 H 0.96704 * 116.99631 * 180.02562 * 25 23 22 46 46 H 1.07993 * 120.04394 * 179.97438 * 26 10 9 47 47 H 1.08002 * 119.96265 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2369 1.4428 -1.2697 6 6 4.4917 2.8855 -1.7112 7 6 4.2008 1.4423 1.2033 8 6 3.5036 1.4478 2.4085 9 6 4.1890 1.4426 3.6016 10 6 5.5875 1.4432 3.6028 11 6 6.3252 1.4443 4.8791 12 8 7.3529 0.8031 4.9881 13 7 5.8608 2.1561 5.9252 14 6 6.6095 2.2636 7.0664 15 1 7.4558 1.6106 7.2205 16 6 6.2802 3.2132 8.0267 17 7 5.0209 3.5178 8.2447 18 14 7.6283 4.0561 9.0073 19 1 8.0613 5.2865 8.2974 20 1 7.1109 4.4164 10.3518 21 1 8.7844 3.1354 9.1523 22 6 4.5548 2.8146 5.8411 23 6 3.5607 2.0696 6.6942 24 8 3.9075 1.0889 7.3089 25 8 2.2901 2.4955 6.7710 26 6 6.2848 1.4430 2.3904 27 6 5.5931 1.4428 1.2009 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6475 0.9291 -2.0292 36 1 5.1894 0.9290 -1.1399 37 1 3.5392 3.3993 -1.8409 38 1 5.0811 3.3991 -0.9516 39 1 5.0367 2.8856 -2.6551 40 1 2.4236 1.4527 2.4068 41 1 3.6476 1.4428 4.5361 42 1 4.7912 4.1807 8.9146 43 1 4.6419 3.8411 6.1972 44 1 4.2151 2.8169 4.8054 45 1 1.6893 1.9853 7.3312 46 1 7.3647 1.4439 2.3877 47 1 6.1309 1.4422 0.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737019945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:55 Heat of formation + Delta-G solvation = -60.874369 kcal Electronic energy + Delta-G solvation = -29772.599252 eV Core-core repulsion = 25728.931719 eV Total energy + Delta-G solvation = -4043.667534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.09407 -39.16871 -38.11850 -36.40256 -35.20153 -34.40360 -33.97979 -32.05896 -31.37051 -30.46112 -28.92935 -27.67893 -26.16547 -24.91325 -23.50912 -22.37035 -21.69648 -21.07277 -20.46795 -19.33328 -17.50251 -17.04251 -16.96096 -16.47922 -15.95803 -15.49080 -15.15593 -14.98699 -14.66688 -14.52520 -14.20029 -14.13901 -13.83343 -13.60210 -13.32838 -13.15988 -13.01616 -12.75511 -12.57904 -12.23925 -12.09849 -11.94085 -11.85097 -11.79289 -11.63151 -11.50020 -11.34717 -11.15861 -10.89512 -10.82708 -10.45784 -10.38992 -10.28670 -10.25344 -9.53648 -9.44812 -8.81826 -8.58599 -8.49437 -8.03834 -7.09886 -6.58173 -3.75310 1.64144 1.77083 3.05511 3.17171 3.27197 3.33452 3.50140 3.67263 4.03868 4.21193 4.42376 4.64346 4.71532 4.76421 4.79371 5.02774 5.07623 5.12567 5.14602 5.16633 5.26486 5.29148 5.40381 5.52408 5.55607 5.58051 5.65325 5.72519 5.79355 5.82164 5.87831 5.96609 6.00372 6.02025 6.11060 6.35450 6.45252 6.52524 6.66372 6.71415 6.99209 7.06184 7.32733 7.51687 7.57812 7.62434 8.04300 8.39127 9.09614 9.11727 9.32307 9.89465 10.52094 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.003457 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.989792 B = 8097.749808 C = 9176.987170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.123 3.877 4 N -0.627 5.627 5 C 0.119 3.881 6 C -0.173 4.173 7 C 0.220 3.780 8 C -0.201 4.201 9 C -0.063 4.063 10 C -0.154 4.154 11 C 0.492 3.508 12 O -0.579 6.579 13 N -0.422 5.422 14 C -0.303 4.303 15 H 0.112 0.888 16 C 0.041 3.959 17 N -0.865 5.865 18 Si 0.917 3.083 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.113 3.887 23 C 0.494 3.506 24 O -0.502 6.502 25 O -0.535 6.535 26 C -0.028 4.028 27 C -0.203 4.203 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.390 0.610 46 H 0.128 0.872 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 0.553 -18.215 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.000 4.000 4 N -0.338 5.338 5 C -0.004 4.004 6 C -0.231 4.231 7 C 0.118 3.882 8 C -0.223 4.223 9 C -0.083 4.083 10 C -0.159 4.159 11 C 0.283 3.717 12 O -0.463 6.463 13 N -0.141 5.141 14 C -0.430 4.430 15 H 0.130 0.870 16 C -0.163 4.163 17 N -0.504 5.504 18 Si 0.743 3.257 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.012 4.012 23 C 0.334 3.666 24 O -0.387 6.387 25 O -0.346 6.346 26 C -0.047 4.047 27 C -0.225 4.225 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.084 0.916 43 H 0.139 0.861 44 H 0.121 0.879 45 H 0.247 0.753 46 H 0.145 0.855 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.353 0.310 -18.229 20.491 hybrid contribution -0.132 0.173 1.188 1.208 sum -9.485 0.483 -17.041 19.508 Atomic orbital electron populations 1.21708 0.95386 1.01887 1.01828 1.21995 0.95811 0.97858 1.02748 1.21458 0.79665 0.96317 1.02583 1.46405 1.04364 1.80143 1.02856 1.21354 0.97263 0.96727 0.85057 1.22236 1.01953 0.97566 1.01383 1.17840 0.91135 0.93714 0.85486 1.20527 0.99335 1.11642 0.90772 1.21377 0.93546 0.95653 0.97698 1.19975 0.93278 1.07995 0.94654 1.17706 0.86969 0.83463 0.83605 1.90615 1.27005 1.44717 1.83999 1.43471 1.13438 1.44072 1.13072 1.19651 1.09575 1.16911 0.96816 0.86997 1.25203 0.96560 0.97303 0.97251 1.69846 1.16347 1.31409 1.32816 0.86062 0.81755 0.79968 0.77880 1.20146 1.21273 1.19153 1.21679 0.82617 0.98993 0.97924 1.23547 0.80152 0.82255 0.80630 1.90617 1.77825 1.27495 1.42734 1.84524 1.22800 1.59847 1.67404 1.20888 0.99857 0.93690 0.90298 1.20542 0.91849 1.11902 0.98218 0.92833 0.92589 0.92433 0.92090 0.91326 0.90449 0.91202 0.91250 0.90567 0.92705 0.91962 0.92032 0.86003 0.85549 0.91602 0.86124 0.87932 0.75327 0.85456 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.15 -1.22 6.26 -26.73 -0.17 -1.38 16 3 C 0.12 1.07 5.15 -4.04 -0.02 1.05 16 4 N -0.63 -6.60 2.59 -171.74 -0.44 -7.04 16 5 C 0.12 1.00 5.86 -4.04 -0.02 0.98 16 6 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 7 C 0.22 3.01 6.55 -83.84 -0.55 2.46 16 8 C -0.20 -2.97 9.18 -39.45 -0.36 -3.34 16 9 C -0.06 -1.15 7.34 -39.21 -0.29 -1.44 16 10 C -0.15 -3.17 5.43 -104.95 -0.57 -3.74 16 11 C 0.49 12.61 7.31 -12.52 -0.09 12.52 16 12 O -0.58 -16.69 16.49 5.25 0.09 -16.60 16 13 N -0.42 -11.06 2.36 -117.32 -0.28 -11.34 16 14 C -0.30 -8.60 8.59 -15.00 -0.13 -8.73 16 15 H 0.11 3.39 7.41 -52.49 -0.39 3.00 16 16 C 0.04 1.08 5.06 -17.46 -0.09 0.99 16 17 N -0.87 -22.56 8.79 55.50 0.49 -22.07 16 18 Si 0.92 20.77 29.67 -169.99 -5.04 15.73 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.11 2.57 4.83 -5.19 -0.03 2.55 16 23 C 0.49 11.36 4.75 36.01 0.17 11.53 16 24 O -0.50 -13.57 16.37 -18.75 -0.31 -13.88 16 25 O -0.53 -9.89 13.42 -39.24 -0.53 -10.42 16 26 C -0.03 -0.49 9.61 -39.21 -0.38 -0.86 16 27 C -0.20 -2.93 9.18 -39.45 -0.36 -3.29 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.70 6.16 -51.93 -0.32 0.38 16 34 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.08 0.65 6.17 -51.93 -0.32 0.33 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.12 1.54 6.11 -52.48 -0.32 1.22 16 41 H 0.13 2.40 4.40 -52.48 -0.23 2.17 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.12 2.83 6.41 -51.93 -0.33 2.50 16 44 H 0.10 2.03 3.82 -51.93 -0.20 1.83 16 45 H 0.39 5.60 9.10 45.56 0.41 6.01 16 46 H 0.13 2.23 8.03 -52.49 -0.42 1.81 16 47 H 0.12 1.44 6.11 -52.49 -0.32 1.12 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -34.21 379.57 -8.23 -42.44 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.79 Total: 9.80 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.13 Total: 7.65 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.23 Total: -40.45 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.75 Total: -40.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.04 Total: 15.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.21 -8.23 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737019945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.432 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds